Wall clock time and date at job start Mon Mar 30 2020 00:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47189 * 2 1 4 4 N 1.46498 * 109.47157 * 120.00345 * 2 1 3 5 5 C 1.46496 * 119.99920 * 304.75687 * 4 2 1 6 6 C 1.50698 * 109.47358 * 262.74984 * 5 4 2 7 7 H 1.08003 * 120.00008 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00322 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99679 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00233 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47096 * 90.00326 * 10 8 6 12 12 H 1.48499 * 109.47157 * 210.00438 * 10 8 6 13 13 H 1.48501 * 109.47029 * 330.00572 * 10 8 6 14 14 C 1.34777 * 120.00169 * 124.75933 * 4 2 1 15 15 O 1.21520 * 119.99694 * 3.34217 * 14 4 2 16 16 C 1.48208 * 120.00248 * 183.34461 * 14 4 2 17 17 C 1.39532 * 119.64945 * 173.30193 * 16 14 4 18 18 C 1.38622 * 119.27582 * 180.02562 * 17 16 14 19 19 C 1.38483 * 118.57715 * 359.72246 * 18 17 16 20 20 C 1.39743 * 119.23617 * 0.52279 * 19 18 17 21 21 C 1.43196 * 119.66804 * 179.74488 * 20 19 18 22 22 N 7.18137 * 98.78041 * 104.35177 * 2 1 3 23 23 N 1.32421 * 119.64829 * 353.28048 * 16 14 4 24 24 H 1.08996 * 109.46980 * 299.99791 * 1 2 3 25 25 H 1.08997 * 109.46892 * 59.99321 * 1 2 3 26 26 H 1.09002 * 109.46823 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47068 * 240.00066 * 2 1 3 28 28 H 1.09003 * 109.47668 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47758 * 300.00148 * 3 2 1 30 30 H 1.09006 * 109.47061 * 60.00062 * 3 2 1 31 31 H 1.09005 * 109.47205 * 22.75587 * 5 4 2 32 32 H 1.09008 * 109.46804 * 142.75180 * 5 4 2 33 33 H 0.96999 * 119.99724 * 179.97438 * 9 8 6 34 34 H 1.07999 * 120.36503 * 359.97438 * 17 16 14 35 35 H 1.08003 * 120.71042 * 180.02562 * 18 17 16 36 36 H 1.07996 * 120.38149 * 180.26389 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.5806 -0.2539 2.5242 6 6 2.6222 0.6563 3.1223 7 1 3.5202 0.8867 2.5684 8 6 2.4282 1.1957 4.3763 9 7 1.3343 0.9155 5.0506 10 14 3.7189 2.3244 5.1174 11 1 3.4234 3.7298 4.7394 12 1 3.6991 2.1951 6.5966 13 1 5.0604 1.9458 4.6053 14 6 2.8704 -1.7279 1.0747 15 8 3.2811 -2.0516 -0.0222 16 6 3.3064 -2.4736 2.2790 17 6 4.0745 -3.6295 2.1346 18 6 4.4777 -4.3213 3.2663 19 6 4.1060 -3.8339 4.5081 20 6 3.3314 -2.6731 4.5818 21 6 2.9373 -2.1641 5.8609 22 7 2.6263 -1.7592 6.8757 23 7 2.9632 -2.0356 3.4807 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.6359 0.2828 2.4371 32 1 1.4462 -1.1241 3.1668 33 1 1.1980 1.2947 5.9329 34 1 4.3513 -3.9819 1.1520 35 1 5.0731 -5.2184 3.1814 36 1 4.4077 -4.3473 5.4090 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589616131.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:10 Heat of formation + Delta-G solvation = 54.146126 kcal Electronic energy + Delta-G solvation = -21363.057469 eV Core-core repulsion = 18234.702788 eV Total energy + Delta-G solvation = -3128.354681 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.40258 -38.66375 -35.99943 -35.71055 -33.16078 -32.35764 -31.57802 -30.62282 -27.10566 -26.65476 -24.59694 -24.34120 -22.87046 -21.35650 -19.19451 -17.99121 -17.01953 -16.38826 -16.01770 -15.46469 -15.38408 -14.65475 -14.38171 -13.83408 -13.66753 -13.37934 -13.06554 -12.74354 -12.59008 -12.25343 -12.18096 -12.07654 -11.92556 -11.65176 -11.51956 -11.35902 -10.93185 -10.79106 -10.71196 -10.37467 -9.90506 -9.75115 -9.59526 -9.46704 -8.89656 -8.65201 -8.16694 -7.64252 -5.98431 -3.96287 0.75915 1.29124 2.96476 3.11769 3.29611 3.39351 3.39557 3.71010 3.76515 4.06444 4.41381 4.47279 4.79249 5.00985 5.15394 5.15737 5.38088 5.45051 5.59235 5.63970 5.67884 5.83300 6.08097 6.10758 6.16627 6.18772 6.36734 6.42662 6.59405 6.73611 6.88377 7.01709 7.54399 7.72964 7.92692 7.97415 8.13256 8.31140 8.32768 8.85419 9.04678 9.62576 11.08790 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.012191 B = 0.010944 C = 0.006733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.243315 B = 2557.862170 C = 4157.634298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.133 3.867 3 C -0.153 4.153 4 N -0.566 5.566 5 C 0.227 3.773 6 C -0.497 4.497 7 H 0.051 0.949 8 C 0.072 3.928 9 N -0.880 5.880 10 Si 0.873 3.127 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.276 1.276 14 C 0.565 3.435 15 O -0.571 6.571 16 C 0.090 3.910 17 C -0.099 4.099 18 C -0.095 4.095 19 C -0.113 4.113 20 C 0.182 3.818 21 C 0.271 3.729 22 N -0.385 5.385 23 N -0.347 5.347 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.086 0.914 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.030 0.970 32 H 0.079 0.921 33 H 0.260 0.740 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.761 -8.854 -5.321 10.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.029 3.971 3 C -0.211 4.211 4 N -0.294 5.294 5 C 0.108 3.892 6 C -0.536 4.536 7 H 0.070 0.930 8 C -0.131 4.131 9 N -0.518 5.518 10 Si 0.702 3.298 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.352 3.648 15 O -0.453 6.453 16 C -0.051 4.051 17 C -0.120 4.120 18 C -0.121 4.121 19 C -0.136 4.136 20 C 0.042 3.958 21 C -0.047 4.047 22 N -0.062 5.062 23 N -0.060 5.060 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.105 0.895 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.166 0.834 35 H 0.163 0.837 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.849 -7.553 -4.092 8.787 hybrid contribution 1.369 0.072 0.228 1.389 sum 3.218 -7.481 -3.864 9.013 Atomic orbital electron populations 1.22128 0.95386 1.01777 1.02360 1.20949 0.93699 0.93599 0.88805 1.22067 1.01345 0.95694 1.02006 1.48374 1.42494 1.28690 1.09886 1.20113 0.95218 0.97502 0.76398 1.21203 1.04779 1.26621 1.01033 0.93035 1.24710 0.95148 0.96507 0.96687 1.69878 1.25272 1.43957 1.12709 0.86882 0.82624 0.81601 0.78739 1.20732 1.21237 1.20154 1.17777 0.79677 0.80739 0.86607 1.90676 1.58354 1.69780 1.26484 1.21278 0.97653 0.94233 0.91915 1.22285 0.94990 0.94139 1.00606 1.21402 0.99284 1.00084 0.91282 1.22148 0.96712 0.95343 0.99379 1.16622 0.98249 0.92893 0.88062 1.24761 0.94238 0.93652 0.92019 1.81118 1.06332 1.05727 1.13012 1.68831 1.14785 1.25709 0.96682 0.91321 0.92230 0.92936 0.89543 0.92849 0.93123 0.90599 0.95235 0.90390 0.92979 0.83405 0.83747 0.84124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.10 37.16 0.34 -2.15 16 2 C 0.13 2.40 3.24 -67.93 -0.22 2.18 16 3 C -0.15 -2.68 8.94 37.16 0.33 -2.35 16 4 N -0.57 -11.76 2.38 -168.44 -0.40 -12.16 16 5 C 0.23 5.29 4.10 -5.20 -0.02 5.27 16 6 C -0.50 -12.68 7.09 -34.44 -0.24 -12.92 16 7 H 0.05 1.38 7.81 -52.48 -0.41 0.97 16 8 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 9 N -0.88 -24.26 13.29 55.43 0.74 -23.53 16 10 Si 0.87 21.50 29.54 -169.99 -5.02 16.48 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.57 11.62 7.59 -12.16 -0.09 11.52 16 15 O -0.57 -12.15 15.68 5.35 0.08 -12.06 16 16 C 0.09 1.67 6.63 -83.03 -0.55 1.12 16 17 C -0.10 -1.40 9.63 -38.96 -0.38 -1.78 16 18 C -0.09 -1.06 10.16 -39.35 -0.40 -1.46 16 19 C -0.11 -1.43 9.80 -38.93 -0.38 -1.81 16 20 C 0.18 3.21 6.58 -85.11 -0.56 2.65 16 21 C 0.27 5.40 15.53 -22.47 -0.35 5.05 16 22 N -0.39 -8.37 18.54 41.84 0.78 -7.59 16 23 N -0.35 -7.01 4.90 -7.74 -0.04 -7.05 16 24 H 0.07 1.17 6.50 -51.93 -0.34 0.84 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.09 1.56 6.93 -51.93 -0.36 1.20 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 1.48 7.32 -51.93 -0.38 1.10 16 31 H 0.03 0.73 6.20 -51.93 -0.32 0.41 16 32 H 0.08 1.93 5.23 -52.38 -0.27 1.66 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.15 1.89 7.65 -52.49 -0.40 1.49 16 35 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 36 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 314.11 15.07 4.73 4.73 Total: -1.00 -30.22 314.11 -5.91 -36.13 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -4.16 Total: -2.10 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: -2.62 Total: 7.14 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: 1.07 Total: -50.32 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.08 Total: -12.06 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.22 -5.91 -36.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589616131.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.276 kcal (2) G-P(sol) polarization free energy of solvation -30.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds