Wall clock time and date at job start Mon Mar 30 2020 00:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47189 * 2 1 4 4 N 1.46498 * 109.47157 * 120.00345 * 2 1 3 5 5 C 1.46496 * 119.99920 * 304.75687 * 4 2 1 6 6 C 1.50698 * 109.47358 * 262.74984 * 5 4 2 7 7 H 1.08003 * 120.00008 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00322 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99679 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00233 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47096 * 90.00326 * 10 8 6 12 12 H 1.48499 * 109.47157 * 210.00438 * 10 8 6 13 13 H 1.48501 * 109.47029 * 330.00572 * 10 8 6 14 14 C 1.34777 * 120.00169 * 124.75933 * 4 2 1 15 15 O 1.21520 * 119.99694 * 3.34217 * 14 4 2 16 16 C 1.48208 * 120.00248 * 183.34461 * 14 4 2 17 17 C 1.39532 * 119.64945 * 173.30193 * 16 14 4 18 18 C 1.38622 * 119.27582 * 180.02562 * 17 16 14 19 19 C 1.38483 * 118.57715 * 359.72246 * 18 17 16 20 20 C 1.39743 * 119.23617 * 0.52279 * 19 18 17 21 21 C 1.43196 * 119.66804 * 179.74488 * 20 19 18 22 22 N 7.18137 * 98.78041 * 104.35177 * 2 1 3 23 23 N 1.32421 * 119.64829 * 353.28048 * 16 14 4 24 24 H 1.08996 * 109.46980 * 299.99791 * 1 2 3 25 25 H 1.08997 * 109.46892 * 59.99321 * 1 2 3 26 26 H 1.09002 * 109.46823 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47068 * 240.00066 * 2 1 3 28 28 H 1.09003 * 109.47668 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47758 * 300.00148 * 3 2 1 30 30 H 1.09006 * 109.47061 * 60.00062 * 3 2 1 31 31 H 1.09005 * 109.47205 * 22.75587 * 5 4 2 32 32 H 1.09008 * 109.46804 * 142.75180 * 5 4 2 33 33 H 0.96999 * 119.99724 * 179.97438 * 9 8 6 34 34 H 1.07999 * 120.36503 * 359.97438 * 17 16 14 35 35 H 1.08003 * 120.71042 * 180.02562 * 18 17 16 36 36 H 1.07996 * 120.38149 * 180.26389 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.5806 -0.2539 2.5242 6 6 2.6222 0.6563 3.1223 7 1 3.5202 0.8867 2.5684 8 6 2.4282 1.1957 4.3763 9 7 1.3343 0.9155 5.0506 10 14 3.7189 2.3244 5.1174 11 1 3.4234 3.7298 4.7394 12 1 3.6991 2.1951 6.5966 13 1 5.0604 1.9458 4.6053 14 6 2.8704 -1.7279 1.0747 15 8 3.2811 -2.0516 -0.0222 16 6 3.3064 -2.4736 2.2790 17 6 4.0745 -3.6295 2.1346 18 6 4.4777 -4.3213 3.2663 19 6 4.1060 -3.8339 4.5081 20 6 3.3314 -2.6731 4.5818 21 6 2.9373 -2.1641 5.8609 22 7 2.6263 -1.7592 6.8757 23 7 2.9632 -2.0356 3.4807 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.6359 0.2828 2.4371 32 1 1.4462 -1.1241 3.1668 33 1 1.1980 1.2947 5.9329 34 1 4.3513 -3.9819 1.1520 35 1 5.0731 -5.2184 3.1814 36 1 4.4077 -4.3473 5.4090 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589616131.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:10 Heat of formation + Delta-G solvation = 36.403904 kcal Electronic energy + Delta-G solvation = -21363.826830 eV Core-core repulsion = 18234.702788 eV Total energy + Delta-G solvation = -3129.124042 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.75043 -40.12030 -37.55488 -37.28922 -34.84867 -33.87032 -32.95580 -32.02275 -29.00234 -28.02517 -25.95673 -25.56957 -24.77789 -22.67315 -20.56564 -19.51575 -18.62541 -18.23629 -17.22333 -16.90757 -16.70763 -16.34363 -16.15089 -15.30012 -15.07653 -14.70518 -14.50401 -14.28031 -14.11399 -14.00283 -13.72759 -13.52136 -13.25803 -13.14411 -13.02147 -12.89158 -12.76955 -12.56332 -12.24169 -12.15577 -11.60150 -11.41772 -11.13835 -10.87552 -10.49724 -10.15904 -9.78641 -9.31363 -8.04023 -6.05070 -0.44457 0.11989 1.29463 1.34894 1.39318 1.60845 1.63242 2.18558 2.28986 2.45710 2.73366 3.07659 3.31513 3.45318 3.92352 3.99629 4.08712 4.13202 4.29139 4.38573 4.46048 4.58125 4.74091 4.83439 4.97299 5.00936 5.06523 5.11062 5.24466 5.34949 5.49336 5.54602 5.63467 5.92784 5.98834 6.31501 6.49467 6.60200 6.80646 7.01575 7.32124 7.57012 9.00787 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.012191 B = 0.010944 C = 0.006733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.243315 B = 2557.862170 C = 4157.634298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.124 3.876 3 C -0.144 4.144 4 N -0.576 5.576 5 C 0.247 3.753 6 C -0.483 4.483 7 H 0.035 0.965 8 C 0.039 3.961 9 N -0.902 5.902 10 Si 0.911 3.089 11 H -0.275 1.275 12 H -0.296 1.296 13 H -0.276 1.276 14 C 0.558 3.442 15 O -0.584 6.584 16 C 0.056 3.944 17 C -0.085 4.085 18 C -0.066 4.066 19 C -0.082 4.082 20 C 0.148 3.852 21 C 0.284 3.716 22 N -0.432 5.432 23 N -0.392 5.392 24 H 0.048 0.952 25 H 0.091 0.909 26 H 0.053 0.947 27 H 0.090 0.910 28 H 0.036 0.964 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.011 0.989 32 H 0.070 0.930 33 H 0.253 0.747 34 H 0.165 0.835 35 H 0.205 0.795 36 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.299 -11.111 -6.370 13.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.022 3.978 3 C -0.202 4.202 4 N -0.304 5.304 5 C 0.127 3.873 6 C -0.523 4.523 7 H 0.053 0.947 8 C -0.160 4.160 9 N -0.542 5.542 10 Si 0.739 3.261 11 H -0.201 1.201 12 H -0.223 1.223 13 H -0.201 1.201 14 C 0.346 3.654 15 O -0.467 6.467 16 C -0.084 4.084 17 C -0.106 4.106 18 C -0.091 4.091 19 C -0.104 4.104 20 C 0.009 3.991 21 C -0.033 4.033 22 N -0.110 5.110 23 N -0.105 5.105 24 H 0.067 0.933 25 H 0.110 0.890 26 H 0.072 0.928 27 H 0.108 0.892 28 H 0.056 0.944 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.183 0.817 35 H 0.221 0.779 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 3.394 -9.797 -5.162 11.582 hybrid contribution 0.976 0.632 0.464 1.252 sum 4.370 -9.165 -4.698 11.187 Atomic orbital electron populations 1.22049 0.93618 1.02075 1.02939 1.21187 0.95187 0.93505 0.87956 1.21983 1.00198 0.95622 1.02415 1.48396 1.43030 1.29381 1.09597 1.19662 0.93604 0.96451 0.77603 1.21190 1.04223 1.26338 1.00518 0.94672 1.25097 0.96130 0.97613 0.97198 1.69969 1.26454 1.45237 1.12540 0.86283 0.81371 0.80940 0.77489 1.20108 1.22293 1.20097 1.18226 0.79112 0.80556 0.87474 1.90642 1.58758 1.70153 1.27147 1.21165 1.00368 0.96284 0.90617 1.22583 0.92991 0.92312 1.02759 1.22036 0.97432 1.00575 0.89030 1.22599 0.93332 0.92610 1.01898 1.16817 1.00827 0.95174 0.86322 1.25349 0.93002 0.92598 0.92367 1.81106 1.08073 1.07101 1.14680 1.68405 1.16476 1.27816 0.97806 0.93251 0.89015 0.92783 0.89185 0.94448 0.89624 0.93172 0.97135 0.91292 0.93805 0.81705 0.77854 0.79940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.60 9.10 71.98 0.65 -3.95 16 2 C 0.12 4.47 3.24 44.99 0.15 4.62 16 3 C -0.14 -5.04 8.94 71.98 0.64 -4.40 16 4 N -0.58 -24.32 2.38 -805.10 -1.91 -26.23 16 5 C 0.25 11.93 4.10 85.63 0.35 12.28 16 6 C -0.48 -25.38 7.09 25.60 0.18 -25.20 16 7 H 0.03 1.93 7.81 -2.91 -0.02 1.91 16 8 C 0.04 2.15 5.46 84.65 0.46 2.61 16 9 N -0.90 -51.41 13.29 21.45 0.28 -51.13 16 10 Si 0.91 44.97 29.54 68.60 2.03 46.99 16 11 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 13 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 14 C 0.56 22.90 7.59 86.89 0.66 23.56 16 15 O -0.58 -24.41 15.68 -3.78 -0.06 -24.47 16 16 C 0.06 2.03 6.63 42.02 0.28 2.31 16 17 C -0.09 -2.11 9.63 22.67 0.22 -1.90 16 18 C -0.07 -1.08 10.16 22.42 0.23 -0.85 16 19 C -0.08 -1.71 9.80 22.69 0.22 -1.49 16 20 C 0.15 5.06 6.58 40.66 0.27 5.33 16 21 C 0.28 11.34 15.53 88.33 1.37 12.71 16 22 N -0.43 -19.14 18.54 19.00 0.35 -18.79 16 23 N -0.39 -15.79 4.90 -178.40 -0.87 -16.66 16 24 H 0.05 1.71 6.50 -2.39 -0.02 1.70 16 25 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.09 3.18 6.93 -2.38 -0.02 3.17 16 28 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.05 2.00 7.32 -2.38 -0.02 1.98 16 31 H 0.01 0.55 6.20 -2.38 -0.01 0.54 16 32 H 0.07 3.55 5.23 -3.28 -0.02 3.53 16 33 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 34 H 0.17 3.54 7.65 -2.91 -0.02 3.52 16 35 H 0.20 1.13 8.06 -2.91 -0.02 1.11 16 36 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -69.98 314.11 6.60 -63.38 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: 1.10 Total: 1.29 kcal Atomic # 6 Polarization: 19.94 SS G_CDS: 5.68 Total: 25.62 kcal Atomic # 7 Polarization: -110.66 SS G_CDS: -2.15 Total: -112.81 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.06 Total: -24.47 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -69.98 6.60 -63.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589616131.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.785 kcal (2) G-P(sol) polarization free energy of solvation -69.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds