Wall clock time and date at job start Mon Mar 30 2020 01:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47426 * 2 1 4 4 C 1.37097 * 120.00178 * 264.75193 * 3 2 1 5 5 H 1.07994 * 119.99766 * 146.15934 * 4 3 2 6 6 C 1.38944 * 119.99956 * 326.15945 * 4 3 2 7 7 N 1.31415 * 120.00069 * 337.69533 * 6 4 3 8 8 Si 1.86797 * 120.00246 * 157.69220 * 6 4 3 9 9 H 1.48501 * 109.47113 * 59.99635 * 8 6 4 10 10 H 1.48496 * 109.47756 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47236 * 300.00262 * 8 6 4 12 12 C 1.34780 * 119.99395 * 84.74565 * 3 2 1 13 13 O 1.21297 * 119.99266 * 179.97438 * 12 3 2 14 14 C 1.50692 * 120.00366 * 0.02562 * 12 3 2 15 15 C 1.50700 * 109.47374 * 179.97438 * 14 12 3 16 16 C 1.38549 * 126.21380 * 264.99959 * 15 14 12 17 17 N 1.31482 * 109.00694 * 179.97438 * 16 15 14 18 18 N 1.40039 * 108.91376 * 0.02562 * 17 16 15 19 19 C 1.36537 * 132.42808 * 180.02562 * 18 17 16 20 20 C 1.34941 * 120.65894 * 179.97438 * 19 18 17 21 21 C 1.40471 * 120.43064 * 0.02562 * 20 19 18 22 22 C 1.36072 * 119.59004 * 0.02562 * 21 20 19 23 23 C 1.37132 * 107.44732 * 359.97438 * 18 17 16 24 24 H 1.08999 * 109.47075 * 59.99561 * 1 2 3 25 25 H 1.08995 * 109.47130 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46763 * 299.99582 * 1 2 3 27 27 H 1.09001 * 109.47214 * 240.00319 * 2 1 3 28 28 H 1.08999 * 109.47075 * 120.00439 * 2 1 3 29 29 H 0.96998 * 120.00011 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47631 * 59.99699 * 14 12 3 31 31 H 1.08999 * 109.47183 * 299.99527 * 14 12 3 32 32 H 1.08000 * 125.49424 * 359.97299 * 16 15 14 33 33 H 1.07996 * 119.67397 * 359.97438 * 19 18 17 34 34 H 1.07998 * 119.78501 * 179.74362 * 20 19 18 35 35 H 1.07997 * 120.20943 * 179.97438 * 21 20 19 36 36 H 1.07996 * 120.38739 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3494 1.9913 -1.1823 5 1 2.1815 3.0506 -1.3088 6 6 2.9007 1.2468 -2.2178 7 7 3.5051 0.1088 -1.9594 8 14 2.7828 1.8632 -3.9771 9 1 3.4562 3.1823 -4.0857 10 1 3.4446 0.8938 -4.8868 11 1 1.3543 2.0040 -4.3577 12 6 2.1423 2.0521 1.1624 13 8 2.5471 3.1955 1.1624 14 6 1.7790 1.3813 2.4620 15 6 2.0070 2.3393 3.6027 16 6 3.1462 2.4220 4.3869 17 7 2.9832 3.3731 5.2800 18 7 1.7179 3.9474 5.1057 19 6 1.0657 4.9545 5.7574 20 6 -0.1768 5.3248 5.3833 21 6 -0.8207 4.6782 4.3154 22 6 -0.1838 3.6720 3.6568 23 6 1.1132 3.3000 4.0590 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8903 -0.4108 -2.6822 30 1 2.4009 0.4970 2.6008 31 1 0.7296 1.0874 2.4382 32 1 4.0262 1.8049 4.2815 33 1 1.5491 5.4598 6.5804 34 1 -0.6813 6.1204 5.9114 35 1 -1.8153 4.9772 4.0192 36 1 -0.6667 3.1664 2.8337 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592586851.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:12 Heat of formation + Delta-G solvation = 77.630972 kcal Electronic energy + Delta-G solvation = -20739.886937 eV Core-core repulsion = 17612.550635 eV Total energy + Delta-G solvation = -3127.336302 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.72659 -38.43709 -36.99013 -34.90820 -33.17499 -31.99244 -30.48386 -30.15942 -29.37936 -26.57216 -24.48857 -23.58218 -22.43497 -22.09534 -20.64214 -18.67077 -16.90714 -16.72030 -16.48917 -15.92740 -15.72121 -15.18031 -14.82505 -14.54339 -14.13222 -13.86105 -13.17685 -12.96913 -12.78395 -12.51090 -12.20260 -11.79899 -11.71313 -11.58030 -11.46711 -11.08195 -11.01788 -10.93289 -10.41895 -10.35047 -10.20973 -10.09953 -10.02333 -9.08340 -8.87694 -8.30168 -7.41470 -7.17702 -6.27021 -3.87339 0.94972 1.31837 2.51637 3.01694 3.22392 3.28156 3.32121 3.58433 4.02166 4.22366 4.42418 4.81173 4.87094 4.99691 5.04057 5.12707 5.22012 5.56304 5.61199 5.72361 5.80742 5.88032 5.97898 6.07151 6.19952 6.22737 6.29460 6.38065 6.52511 6.57137 6.61140 6.86506 6.95694 7.12984 7.32563 7.65236 7.83965 8.32137 8.60184 9.28082 9.50710 10.12813 10.76600 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.027046 B = 0.004823 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.017934 B = 5804.315945 C = 5900.875871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.095 3.905 3 N -0.445 5.445 4 C -0.304 4.304 5 H 0.089 0.911 6 C 0.034 3.966 7 N -0.871 5.871 8 Si 0.915 3.085 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.459 3.541 13 O -0.575 6.575 14 C -0.056 4.056 15 C -0.201 4.201 16 C 0.088 3.912 17 N -0.327 5.327 18 N -0.278 5.278 19 C 0.107 3.893 20 C -0.169 4.169 21 C -0.100 4.100 22 C -0.093 4.093 23 C 0.108 3.892 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.041 0.959 27 H 0.113 0.887 28 H 0.048 0.952 29 H 0.267 0.733 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.189 0.811 33 H 0.162 0.838 34 H 0.149 0.851 35 H 0.136 0.864 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.957 1.850 11.564 14.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.029 4.029 3 N -0.165 5.165 4 C -0.432 4.432 5 H 0.107 0.893 6 C -0.169 4.169 7 N -0.510 5.510 8 Si 0.742 3.258 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.200 1.200 12 C 0.247 3.753 13 O -0.458 6.458 14 C -0.097 4.097 15 C -0.212 4.212 16 C -0.088 4.088 17 N -0.151 5.151 18 N -0.045 5.045 19 C -0.018 4.018 20 C -0.191 4.191 21 C -0.123 4.123 22 C -0.113 4.113 23 C -0.010 4.010 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.130 0.870 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.205 0.795 33 H 0.179 0.821 34 H 0.166 0.834 35 H 0.154 0.846 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.956 2.829 12.445 15.039 hybrid contribution -0.306 -0.262 -1.620 1.669 sum -8.261 2.568 10.826 13.858 Atomic orbital electron populations 1.22214 0.98424 1.00255 1.01363 1.21584 0.91585 0.85663 1.04110 1.43531 1.56252 1.11825 1.04862 1.19388 1.39534 0.95342 0.88950 0.89291 1.25287 0.94676 0.96573 1.00358 1.69914 1.32878 1.15361 1.32836 0.86175 0.78544 0.78718 0.82343 1.19871 1.21032 1.20004 1.20331 0.82390 0.87985 0.84573 1.90525 1.49746 1.18802 1.86746 1.19955 1.02306 0.96628 0.90849 1.19496 0.94656 1.03930 1.03165 1.23618 0.98261 0.94931 0.92019 1.77765 0.94772 1.15529 1.27017 1.46065 1.12396 1.23667 1.22417 1.21353 0.93055 0.89569 0.97843 1.20721 0.94402 1.03421 1.00601 1.21039 1.00439 0.95495 0.95340 1.20632 0.91860 0.98418 1.00403 1.19234 0.94738 0.95630 0.91419 0.92535 0.93163 0.93990 0.86961 0.93394 0.92303 0.89283 0.90035 0.79456 0.82069 0.83365 0.84596 0.83952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 10.15 37.16 0.38 -2.51 16 2 C 0.09 2.02 5.43 -4.04 -0.02 2.00 16 3 N -0.44 -11.21 2.56 -114.81 -0.29 -11.50 16 4 C -0.30 -8.48 8.98 -14.94 -0.13 -8.61 16 5 H 0.09 2.62 7.70 -52.49 -0.40 2.22 16 6 C 0.03 0.91 4.92 -17.47 -0.09 0.83 16 7 N -0.87 -23.43 11.33 55.50 0.63 -22.80 16 8 Si 0.92 20.72 29.61 -169.99 -5.03 15.68 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 11 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 12 C 0.46 11.27 7.59 -10.99 -0.08 11.19 16 13 O -0.58 -16.50 15.86 5.54 0.09 -16.41 16 14 C -0.06 -1.06 4.79 -29.04 -0.14 -1.20 16 15 C -0.20 -3.80 4.68 -104.25 -0.49 -4.29 16 16 C 0.09 1.58 11.87 -17.59 -0.21 1.37 16 17 N -0.33 -5.98 12.66 30.46 0.39 -5.59 16 18 N -0.28 -4.73 3.90 -10.71 -0.04 -4.77 16 19 C 0.11 1.36 11.19 -16.63 -0.19 1.17 16 20 C -0.17 -1.77 9.98 -39.91 -0.40 -2.17 16 21 C -0.10 -1.16 10.07 -39.52 -0.40 -1.56 16 22 C -0.09 -1.39 10.09 -39.39 -0.40 -1.79 16 23 C 0.11 1.92 6.76 -84.27 -0.57 1.35 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.67 6.59 -51.93 -0.34 0.33 16 27 H 0.11 2.67 5.34 -51.93 -0.28 2.39 16 28 H 0.05 0.92 6.66 -51.93 -0.35 0.58 16 29 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 30 H 0.09 1.53 7.41 -51.93 -0.38 1.14 16 31 H 0.08 1.35 6.54 -51.93 -0.34 1.01 16 32 H 0.19 2.83 8.06 -52.49 -0.42 2.40 16 33 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 35 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.14 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 308.86 15.07 4.65 4.65 Total: -1.00 -34.45 308.86 -6.53 -40.99 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -4.19 Total: 3.96 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -2.73 Total: -4.21 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.68 Total: -44.67 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: 0.09 Total: -16.41 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.45 -6.53 -40.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592586851.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.617 kcal (2) G-P(sol) polarization free energy of solvation -34.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds