Wall clock time and date at job start Mon Mar 30 2020 01:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47426 * 2 1 4 4 C 1.37097 * 120.00178 * 264.75193 * 3 2 1 5 5 H 1.07994 * 119.99766 * 146.15934 * 4 3 2 6 6 C 1.38944 * 119.99956 * 326.15945 * 4 3 2 7 7 N 1.31415 * 120.00069 * 337.69533 * 6 4 3 8 8 Si 1.86797 * 120.00246 * 157.69220 * 6 4 3 9 9 H 1.48501 * 109.47113 * 59.99635 * 8 6 4 10 10 H 1.48496 * 109.47756 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47236 * 300.00262 * 8 6 4 12 12 C 1.34780 * 119.99395 * 84.74565 * 3 2 1 13 13 O 1.21297 * 119.99266 * 179.97438 * 12 3 2 14 14 C 1.50692 * 120.00366 * 0.02562 * 12 3 2 15 15 C 1.50700 * 109.47374 * 179.97438 * 14 12 3 16 16 C 1.38549 * 126.21380 * 264.99959 * 15 14 12 17 17 N 1.31482 * 109.00694 * 179.97438 * 16 15 14 18 18 N 1.40039 * 108.91376 * 0.02562 * 17 16 15 19 19 C 1.36537 * 132.42808 * 180.02562 * 18 17 16 20 20 C 1.34941 * 120.65894 * 179.97438 * 19 18 17 21 21 C 1.40471 * 120.43064 * 0.02562 * 20 19 18 22 22 C 1.36072 * 119.59004 * 0.02562 * 21 20 19 23 23 C 1.37132 * 107.44732 * 359.97438 * 18 17 16 24 24 H 1.08999 * 109.47075 * 59.99561 * 1 2 3 25 25 H 1.08995 * 109.47130 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46763 * 299.99582 * 1 2 3 27 27 H 1.09001 * 109.47214 * 240.00319 * 2 1 3 28 28 H 1.08999 * 109.47075 * 120.00439 * 2 1 3 29 29 H 0.96998 * 120.00011 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47631 * 59.99699 * 14 12 3 31 31 H 1.08999 * 109.47183 * 299.99527 * 14 12 3 32 32 H 1.08000 * 125.49424 * 359.97299 * 16 15 14 33 33 H 1.07996 * 119.67397 * 359.97438 * 19 18 17 34 34 H 1.07998 * 119.78501 * 179.74362 * 20 19 18 35 35 H 1.07997 * 120.20943 * 179.97438 * 21 20 19 36 36 H 1.07996 * 120.38739 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3494 1.9913 -1.1823 5 1 2.1815 3.0506 -1.3088 6 6 2.9007 1.2468 -2.2178 7 7 3.5051 0.1088 -1.9594 8 14 2.7828 1.8632 -3.9771 9 1 3.4562 3.1823 -4.0857 10 1 3.4446 0.8938 -4.8868 11 1 1.3543 2.0040 -4.3577 12 6 2.1423 2.0521 1.1624 13 8 2.5471 3.1955 1.1624 14 6 1.7790 1.3813 2.4620 15 6 2.0070 2.3393 3.6027 16 6 3.1462 2.4220 4.3869 17 7 2.9832 3.3731 5.2800 18 7 1.7179 3.9474 5.1057 19 6 1.0657 4.9545 5.7574 20 6 -0.1768 5.3248 5.3833 21 6 -0.8207 4.6782 4.3154 22 6 -0.1838 3.6720 3.6568 23 6 1.1132 3.3000 4.0590 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8903 -0.4108 -2.6822 30 1 2.4009 0.4970 2.6008 31 1 0.7296 1.0874 2.4382 32 1 4.0262 1.8049 4.2815 33 1 1.5491 5.4598 6.5804 34 1 -0.6813 6.1204 5.9114 35 1 -1.8153 4.9772 4.0192 36 1 -0.6667 3.1664 2.8337 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592586851.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:11 Heat of formation + Delta-G solvation = 55.851443 kcal Electronic energy + Delta-G solvation = -20740.831368 eV Core-core repulsion = 17612.550635 eV Total energy + Delta-G solvation = -3128.280733 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.91835 -40.28038 -38.09872 -36.81707 -34.50679 -33.86652 -31.71766 -31.41267 -31.06421 -28.05594 -26.30028 -24.64309 -23.91463 -23.45196 -22.03259 -20.36563 -18.66597 -18.09426 -17.69325 -17.57572 -16.86916 -16.67128 -16.36807 -15.88873 -15.81471 -15.43341 -14.55715 -14.46874 -14.36946 -13.94826 -13.56254 -13.53600 -13.14429 -12.86130 -12.70493 -12.64989 -12.57848 -12.51010 -12.16977 -12.09235 -11.76082 -11.58195 -11.32503 -10.83648 -10.25866 -10.22273 -9.39557 -8.41812 -8.27000 -5.97844 -0.08722 0.20250 1.40075 1.41416 1.42411 1.52141 1.71942 2.15261 2.33564 2.51477 3.06680 3.25355 3.35926 3.76428 3.94386 4.02209 4.19365 4.24077 4.30750 4.39580 4.51611 4.59861 4.70717 4.74561 4.78084 4.92148 5.04089 5.13597 5.17830 5.36983 5.38278 5.49467 5.55402 5.62144 5.65647 6.00804 6.26393 6.60067 6.62872 7.26761 7.57642 8.19451 8.72353 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.027046 B = 0.004823 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.017934 B = 5804.315945 C = 5900.875871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.092 3.908 3 N -0.456 5.456 4 C -0.339 4.339 5 H 0.058 0.942 6 C 0.003 3.997 7 N -0.888 5.888 8 Si 0.977 3.023 9 H -0.281 1.281 10 H -0.271 1.271 11 H -0.264 1.264 12 C 0.449 3.551 13 O -0.628 6.628 14 C -0.035 4.035 15 C -0.246 4.246 16 C 0.075 3.925 17 N -0.357 5.357 18 N -0.284 5.284 19 C 0.081 3.919 20 C -0.149 4.149 21 C -0.074 4.074 22 C -0.135 4.135 23 C 0.099 3.901 24 H 0.038 0.962 25 H 0.084 0.916 26 H 0.056 0.944 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.273 0.727 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.202 0.798 33 H 0.191 0.809 34 H 0.200 0.800 35 H 0.177 0.823 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.298 2.323 12.386 16.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.031 4.031 3 N -0.175 5.175 4 C -0.468 4.468 5 H 0.076 0.924 6 C -0.199 4.199 7 N -0.526 5.526 8 Si 0.801 3.199 9 H -0.207 1.207 10 H -0.196 1.196 11 H -0.189 1.189 12 C 0.239 3.761 13 O -0.515 6.515 14 C -0.076 4.076 15 C -0.258 4.258 16 C -0.100 4.100 17 N -0.181 5.181 18 N -0.051 5.051 19 C -0.043 4.043 20 C -0.170 4.170 21 C -0.096 4.096 22 C -0.155 4.155 23 C -0.020 4.020 24 H 0.058 0.942 25 H 0.103 0.897 26 H 0.075 0.925 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.218 0.782 33 H 0.208 0.792 34 H 0.217 0.783 35 H 0.195 0.805 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.306 3.258 13.280 17.123 hybrid contribution 0.314 -0.260 -1.785 1.831 sum -9.992 2.998 11.495 15.523 Atomic orbital electron populations 1.22099 0.95336 1.02440 1.01252 1.21710 0.94125 0.83491 1.03801 1.43814 1.56182 1.13088 1.04460 1.19302 1.41693 0.94614 0.91153 0.92376 1.25992 0.93684 0.96659 1.03554 1.69984 1.32591 1.15949 1.34088 0.85253 0.78981 0.77891 0.77760 1.20704 1.19558 1.18862 1.21289 0.81198 0.87473 0.86130 1.90469 1.52041 1.21242 1.87742 1.19764 1.03693 0.96498 0.87669 1.19579 0.95943 1.05915 1.04338 1.23895 0.98719 0.95249 0.92130 1.77647 0.96122 1.16407 1.27948 1.46374 1.12050 1.24206 1.22517 1.22242 0.94206 0.89063 0.98819 1.21413 0.93157 1.03081 0.99338 1.21651 1.01525 0.92788 0.93675 1.20862 0.91515 1.00908 1.02173 1.19635 0.95696 0.95298 0.91420 0.94242 0.89738 0.92492 0.89370 0.91448 0.91758 0.87894 0.87788 0.78174 0.79236 0.78275 0.80549 0.83877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.16 10.15 71.98 0.73 -4.43 16 2 C 0.09 3.91 5.43 86.38 0.47 4.38 16 3 N -0.46 -23.63 2.56 -635.54 -1.63 -25.25 16 4 C -0.34 -19.65 8.98 84.04 0.75 -18.89 16 5 H 0.06 3.64 7.70 -2.91 -0.02 3.62 16 6 C 0.00 0.18 4.92 84.92 0.42 0.59 16 7 N -0.89 -48.21 11.33 21.66 0.25 -47.97 16 8 Si 0.98 42.93 29.61 68.60 2.03 44.96 16 9 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 10 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 11 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 12 C 0.45 22.81 7.59 87.65 0.66 23.48 16 13 O -0.63 -37.90 15.86 -3.08 -0.05 -37.95 16 14 C -0.04 -1.35 4.79 29.10 0.14 -1.21 16 15 C -0.25 -9.56 4.68 -19.63 -0.09 -9.65 16 16 C 0.07 2.80 11.87 84.82 1.01 3.81 16 17 N -0.36 -13.36 12.66 -57.54 -0.73 -14.08 16 18 N -0.28 -9.57 3.90 -187.79 -0.73 -10.31 16 19 C 0.08 1.85 11.19 83.20 0.93 2.78 16 20 C -0.15 -2.45 9.98 22.06 0.22 -2.23 16 21 C -0.07 -1.43 10.07 22.31 0.22 -1.20 16 22 C -0.13 -3.86 10.09 22.39 0.23 -3.63 16 23 C 0.10 3.54 6.76 39.10 0.26 3.80 16 24 H 0.04 1.44 8.14 -2.39 -0.02 1.43 16 25 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.06 1.73 6.59 -2.39 -0.02 1.72 16 27 H 0.09 4.22 5.34 -2.39 -0.01 4.21 16 28 H 0.07 2.55 6.66 -2.39 -0.02 2.53 16 29 H 0.27 13.84 8.31 -92.71 -0.77 13.06 16 30 H 0.10 3.55 7.41 -2.39 -0.02 3.53 16 31 H 0.10 3.39 6.54 -2.39 -0.02 3.38 16 32 H 0.20 6.41 8.06 -2.91 -0.02 6.38 16 33 H 0.19 3.06 8.06 -2.91 -0.02 3.04 16 34 H 0.20 1.27 8.06 -2.91 -0.02 1.25 16 35 H 0.18 1.99 8.06 -2.91 -0.02 1.96 16 36 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -79.79 308.86 6.19 -73.60 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 1.09 Total: 19.41 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 5.96 Total: -2.40 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -2.84 Total: -97.61 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -0.05 Total: -37.95 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -79.79 6.19 -73.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592586851.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.447 kcal (2) G-P(sol) polarization free energy of solvation -79.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds