Wall clock time and date at job start Mon Mar 30 2020 01:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47066 * 2 1 4 4 C 1.50695 * 109.47279 * 119.99841 * 2 1 3 5 5 H 1.07999 * 120.00376 * 119.99739 * 4 2 1 6 6 C 1.37876 * 120.00418 * 300.00150 * 4 2 1 7 7 N 1.31518 * 119.99687 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00415 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47329 * 60.00060 * 8 6 4 10 10 H 1.48503 * 109.47107 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46951 * 299.99678 * 8 6 4 12 12 N 1.46496 * 109.47084 * 239.99963 * 2 1 3 13 13 C 1.34777 * 120.00271 * 84.99619 * 12 2 1 14 14 O 1.21278 * 119.99854 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00161 * 180.02562 * 13 12 2 16 16 C 1.50701 * 109.47064 * 180.02562 * 15 13 12 17 17 C 1.38544 * 126.21800 * 265.02595 * 16 15 13 18 18 N 1.31486 * 109.00759 * 179.97438 * 17 16 15 19 19 N 1.40040 * 108.91292 * 359.97438 * 18 17 16 20 20 C 1.36540 * 132.42945 * 180.02562 * 19 18 17 21 21 C 1.34932 * 120.65729 * 179.27943 * 20 19 18 22 22 C 1.40478 * 120.43303 * 0.59126 * 21 20 19 23 23 C 1.36068 * 119.58613 * 359.63051 * 22 21 20 24 24 C 1.37129 * 107.44878 * 359.76887 * 19 18 17 25 25 H 1.09002 * 109.47281 * 59.99892 * 1 2 3 26 26 H 1.08999 * 109.47646 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47057 * 300.00097 * 1 2 3 28 28 H 0.97003 * 120.00117 * 179.97438 * 7 6 4 29 29 H 0.97005 * 120.00266 * 265.00202 * 12 2 1 30 30 H 1.09002 * 109.47152 * 60.00245 * 15 13 12 31 31 H 1.09001 * 109.46980 * 300.00345 * 15 13 12 32 32 H 1.08005 * 125.49495 * 359.97438 * 17 16 15 33 33 H 1.08000 * 119.66778 * 359.94753 * 20 19 18 34 34 H 1.08006 * 119.78606 * 180.22191 * 21 20 19 35 35 H 1.08000 * 120.20791 * 179.64646 * 22 21 20 36 36 H 1.07999 * 120.38488 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.8064 -1.1208 4.0082 10 1 1.8270 -0.4198 5.2204 11 1 1.8258 -2.5201 4.0077 12 7 2.0183 -0.6906 -1.1961 13 6 2.1469 -0.0183 -2.3572 14 8 1.8589 1.1585 -2.4115 15 6 2.6487 -0.7289 -3.5878 16 6 2.7000 0.2396 -4.7412 17 6 1.7149 0.4270 -5.6972 18 7 2.1100 1.3524 -6.5435 19 7 3.3797 1.8039 -6.1623 20 6 4.2217 2.7397 -6.6910 21 6 5.4112 3.0014 -6.1102 22 6 5.8084 2.3049 -4.9567 23 6 4.9819 1.3663 -4.4207 24 6 3.7410 1.1115 -5.0352 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7089 1.1614 3.4844 29 1 2.2490 -1.6318 -1.1526 30 1 1.9758 -1.5507 -3.8326 31 1 3.6478 -1.1215 -3.3986 32 1 0.7741 -0.1018 -5.7402 33 1 3.9281 3.2835 -7.5768 34 1 6.0648 3.7471 -6.5383 35 1 6.7637 2.5133 -4.4981 36 1 5.2744 0.8229 -3.5345 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592755542.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:25 Heat of formation + Delta-G solvation = 62.651514 kcal Electronic energy + Delta-G solvation = -20185.695384 eV Core-core repulsion = 17057.709525 eV Total energy + Delta-G solvation = -3127.985860 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.92836 -38.69719 -37.16186 -34.75185 -33.36422 -32.31448 -30.78796 -30.54813 -28.74357 -26.24610 -25.20630 -23.75398 -22.58728 -21.55351 -20.29321 -19.25472 -17.20119 -17.02672 -16.63675 -15.96909 -15.72319 -15.25631 -15.08556 -14.80412 -14.26745 -14.11693 -13.36097 -13.05831 -12.85928 -12.41937 -12.26890 -11.81226 -11.73132 -11.70551 -11.43596 -11.05379 -10.91581 -10.69992 -10.51738 -10.35562 -10.28445 -10.19943 -9.26941 -9.01400 -8.91131 -8.51097 -7.81807 -7.39795 -6.09215 -4.18611 0.78772 1.14580 2.32828 2.79290 3.26697 3.32014 3.33012 3.40387 3.53920 4.22861 4.28557 4.51355 4.65893 4.70760 4.86997 5.04289 5.22630 5.28797 5.37893 5.48984 5.58309 5.77018 5.83634 5.92318 6.08021 6.28071 6.39178 6.65401 6.87904 6.93803 7.02224 7.20849 7.53920 7.62677 7.64214 7.74733 7.96928 8.19636 8.75526 8.84133 9.25241 9.49768 10.96632 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029347 B = 0.004000 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.875701 B = 6998.543610 C = 7447.535384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.046 0.954 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.713 5.713 13 C 0.498 3.502 14 O -0.548 6.548 15 C -0.060 4.060 16 C -0.217 4.217 17 C 0.090 3.910 18 N -0.326 5.326 19 N -0.276 5.276 20 C 0.107 3.893 21 C -0.166 4.166 22 C -0.094 4.094 23 C -0.099 4.099 24 C 0.114 3.886 25 H 0.014 0.986 26 H 0.026 0.974 27 H 0.088 0.912 28 H 0.264 0.736 29 H 0.388 0.612 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.189 0.811 33 H 0.164 0.836 34 H 0.151 0.849 35 H 0.139 0.861 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.530 -1.162 -16.087 18.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.064 0.936 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.362 5.362 13 C 0.282 3.718 14 O -0.426 6.426 15 C -0.102 4.102 16 C -0.229 4.229 17 C -0.086 4.086 18 N -0.149 5.149 19 N -0.043 5.043 20 C -0.018 4.018 21 C -0.188 4.188 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.004 4.004 25 H 0.033 0.967 26 H 0.045 0.955 27 H 0.107 0.893 28 H 0.074 0.926 29 H 0.220 0.780 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.206 0.794 33 H 0.181 0.819 34 H 0.169 0.831 35 H 0.157 0.843 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.763 0.449 -17.056 18.745 hybrid contribution 0.515 -1.264 1.683 2.167 sum 8.278 -0.815 -15.372 17.479 Atomic orbital electron populations 1.22066 0.98629 0.99006 1.00793 1.18684 0.90931 0.93921 0.80160 0.93584 1.21201 1.32401 1.13163 0.90405 0.92149 1.24894 0.94853 0.94954 0.99037 1.69903 1.35889 1.22458 1.23907 0.86520 0.79132 0.79604 0.81889 1.20210 1.21169 1.20162 1.46525 1.65592 1.13470 1.10584 1.20524 0.78903 0.87712 0.84617 1.90656 1.50708 1.16204 1.85074 1.19930 1.02980 0.96607 0.90647 1.19317 0.95144 1.06225 1.02177 1.23607 0.98934 0.94284 0.91798 1.77806 0.92323 1.19155 1.25618 1.46083 1.13340 1.25838 1.19015 1.21399 0.89608 0.91243 0.99556 1.20781 0.96299 1.03440 0.98321 1.21105 1.00075 0.95093 0.95381 1.20657 0.91232 0.99601 1.00397 1.19264 0.96292 0.95260 0.89599 0.96716 0.95527 0.89312 0.92575 0.78035 0.88556 0.89089 0.79414 0.81874 0.83146 0.84350 0.83735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.26 37.16 0.34 -3.36 16 2 C 0.26 6.81 2.56 -69.09 -0.18 6.64 16 3 H 0.05 1.38 7.58 -51.93 -0.39 0.98 16 4 C -0.53 -14.15 8.73 -34.44 -0.30 -14.46 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.14 11.32 55.43 0.63 -24.52 16 8 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.71 -14.75 5.07 -54.94 -0.28 -15.03 16 13 C 0.50 9.93 7.79 -10.98 -0.09 9.85 16 14 O -0.55 -13.54 15.70 5.56 0.09 -13.46 16 15 C -0.06 -0.87 6.19 -29.03 -0.18 -1.05 16 16 C -0.22 -3.42 4.68 -104.25 -0.49 -3.91 16 17 C 0.09 1.36 11.87 -17.59 -0.21 1.16 16 18 N -0.33 -5.26 12.66 30.46 0.39 -4.88 16 19 N -0.28 -4.16 3.90 -10.71 -0.04 -4.20 16 20 C 0.11 1.20 11.19 -16.63 -0.19 1.01 16 21 C -0.17 -1.52 9.98 -39.91 -0.40 -1.92 16 22 C -0.09 -0.96 10.07 -39.52 -0.40 -1.36 16 23 C -0.10 -1.30 10.09 -39.40 -0.40 -1.69 16 24 C 0.11 1.78 6.76 -84.27 -0.57 1.21 16 25 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 29 H 0.39 6.79 8.54 -40.82 -0.35 6.44 16 30 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.19 2.24 8.06 -52.48 -0.42 1.81 16 33 H 0.16 1.33 8.06 -52.49 -0.42 0.90 16 34 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16 35 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 315.06 15.07 4.75 4.75 Total: -1.00 -34.71 315.06 -7.04 -41.75 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -4.40 Total: 6.19 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -3.14 Total: -6.20 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.69 Total: -48.63 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.09 Total: -13.46 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.71 -7.04 -41.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592755542.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.398 kcal (2) G-P(sol) polarization free energy of solvation -34.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds