Wall clock time and date at job start Mon Mar 30 2020 01:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47066 * 2 1 4 4 C 1.50695 * 109.47279 * 119.99841 * 2 1 3 5 5 H 1.07999 * 120.00376 * 119.99739 * 4 2 1 6 6 C 1.37876 * 120.00418 * 300.00150 * 4 2 1 7 7 N 1.31518 * 119.99687 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00415 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47329 * 60.00060 * 8 6 4 10 10 H 1.48503 * 109.47107 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46951 * 299.99678 * 8 6 4 12 12 N 1.46496 * 109.47084 * 239.99963 * 2 1 3 13 13 C 1.34777 * 120.00271 * 84.99619 * 12 2 1 14 14 O 1.21278 * 119.99854 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00161 * 180.02562 * 13 12 2 16 16 C 1.50701 * 109.47064 * 180.02562 * 15 13 12 17 17 C 1.38544 * 126.21800 * 265.02595 * 16 15 13 18 18 N 1.31486 * 109.00759 * 179.97438 * 17 16 15 19 19 N 1.40040 * 108.91292 * 359.97438 * 18 17 16 20 20 C 1.36540 * 132.42945 * 180.02562 * 19 18 17 21 21 C 1.34932 * 120.65729 * 179.27943 * 20 19 18 22 22 C 1.40478 * 120.43303 * 0.59126 * 21 20 19 23 23 C 1.36068 * 119.58613 * 359.63051 * 22 21 20 24 24 C 1.37129 * 107.44878 * 359.76887 * 19 18 17 25 25 H 1.09002 * 109.47281 * 59.99892 * 1 2 3 26 26 H 1.08999 * 109.47646 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47057 * 300.00097 * 1 2 3 28 28 H 0.97003 * 120.00117 * 179.97438 * 7 6 4 29 29 H 0.97005 * 120.00266 * 265.00202 * 12 2 1 30 30 H 1.09002 * 109.47152 * 60.00245 * 15 13 12 31 31 H 1.09001 * 109.46980 * 300.00345 * 15 13 12 32 32 H 1.08005 * 125.49495 * 359.97438 * 17 16 15 33 33 H 1.08000 * 119.66778 * 359.94753 * 20 19 18 34 34 H 1.08006 * 119.78606 * 180.22191 * 21 20 19 35 35 H 1.08000 * 120.20791 * 179.64646 * 22 21 20 36 36 H 1.07999 * 120.38488 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.8064 -1.1208 4.0082 10 1 1.8270 -0.4198 5.2204 11 1 1.8258 -2.5201 4.0077 12 7 2.0183 -0.6906 -1.1961 13 6 2.1469 -0.0183 -2.3572 14 8 1.8589 1.1585 -2.4115 15 6 2.6487 -0.7289 -3.5878 16 6 2.7000 0.2396 -4.7412 17 6 1.7149 0.4270 -5.6972 18 7 2.1100 1.3524 -6.5435 19 7 3.3797 1.8039 -6.1623 20 6 4.2217 2.7397 -6.6910 21 6 5.4112 3.0014 -6.1102 22 6 5.8084 2.3049 -4.9567 23 6 4.9819 1.3663 -4.4207 24 6 3.7410 1.1115 -5.0352 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7089 1.1614 3.4844 29 1 2.2490 -1.6318 -1.1526 30 1 1.9758 -1.5507 -3.8326 31 1 3.6478 -1.1215 -3.3986 32 1 0.7741 -0.1018 -5.7402 33 1 3.9281 3.2835 -7.5768 34 1 6.0648 3.7471 -6.5383 35 1 6.7637 2.5133 -4.4981 36 1 5.2744 0.8229 -3.5345 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592755542.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:25 Heat of formation + Delta-G solvation = 39.027977 kcal Electronic energy + Delta-G solvation = -20186.719778 eV Core-core repulsion = 17057.709525 eV Total energy + Delta-G solvation = -3129.010253 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.93927 -40.34765 -38.11192 -36.65214 -34.47035 -34.22469 -32.01771 -31.55152 -30.45816 -27.47918 -27.25336 -24.66433 -23.67645 -23.15466 -21.66113 -20.90781 -18.84981 -18.11454 -17.62174 -17.42480 -17.09179 -16.69351 -16.41721 -15.97765 -15.85105 -15.45564 -14.65923 -14.52466 -14.34181 -13.97834 -13.66775 -13.30495 -12.99746 -12.85018 -12.73477 -12.69643 -12.61571 -12.45389 -12.23328 -12.12710 -11.63139 -11.37855 -11.08482 -10.64802 -10.50289 -10.25609 -9.65691 -8.42878 -8.14426 -6.32619 -0.10947 0.18986 1.39457 1.46583 1.48924 1.56659 1.69247 1.97529 2.39180 2.48039 2.89997 3.15570 3.32999 3.74587 3.92515 3.99944 4.14208 4.22026 4.33171 4.50325 4.60257 4.72322 4.78076 4.80516 4.94656 5.01361 5.13447 5.16085 5.34621 5.46678 5.53218 5.61362 5.67588 5.74172 5.96938 5.98257 6.13655 6.59331 6.76485 7.10163 7.36152 7.70667 8.91387 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029347 B = 0.004000 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.875701 B = 6998.543610 C = 7447.535384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.271 3.729 3 H -0.007 1.007 4 C -0.545 4.545 5 H 0.076 0.924 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.973 3.027 9 H -0.269 1.269 10 H -0.288 1.288 11 H -0.263 1.263 12 N -0.708 5.708 13 C 0.497 3.503 14 O -0.601 6.601 15 C -0.042 4.042 16 C -0.252 4.252 17 C 0.080 3.920 18 N -0.359 5.359 19 N -0.285 5.285 20 C 0.082 3.918 21 C -0.150 4.150 22 C -0.076 4.076 23 C -0.136 4.136 24 C 0.098 3.902 25 H 0.008 0.992 26 H 0.042 0.958 27 H 0.063 0.937 28 H 0.264 0.736 29 H 0.406 0.594 30 H 0.129 0.871 31 H 0.118 0.882 32 H 0.209 0.791 33 H 0.189 0.811 34 H 0.197 0.803 35 H 0.174 0.826 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.716 -2.176 -16.605 19.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.167 3.833 3 H 0.010 0.990 4 C -0.583 4.583 5 H 0.094 0.906 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.798 3.202 9 H -0.194 1.194 10 H -0.214 1.214 11 H -0.188 1.188 12 N -0.357 5.357 13 C 0.284 3.716 14 O -0.482 6.482 15 C -0.082 4.082 16 C -0.264 4.264 17 C -0.095 4.095 18 N -0.183 5.183 19 N -0.052 5.052 20 C -0.043 4.043 21 C -0.171 4.171 22 C -0.099 4.099 23 C -0.156 4.156 24 C -0.021 4.021 25 H 0.027 0.973 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.241 0.759 30 H 0.147 0.853 31 H 0.136 0.864 32 H 0.226 0.774 33 H 0.206 0.794 34 H 0.214 0.786 35 H 0.191 0.809 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 9.962 -0.612 -17.608 20.241 hybrid contribution -0.038 -0.787 1.762 1.930 sum 9.924 -1.400 -15.846 18.750 Atomic orbital electron populations 1.21887 0.98639 0.99393 0.99228 1.18266 0.90897 0.91759 0.82355 0.98954 1.21549 1.32497 1.13544 0.90753 0.90601 1.25837 0.94889 0.95568 1.02443 1.70070 1.37163 1.24090 1.24567 0.85381 0.78702 0.78696 0.77449 1.19413 1.21397 1.18772 1.46273 1.65598 1.14243 1.09616 1.21527 0.77333 0.87165 0.85563 1.90629 1.52826 1.18855 1.85932 1.19869 1.04797 0.96450 0.87118 1.19538 0.95931 1.07814 1.03121 1.24010 0.99665 0.94200 0.91649 1.77692 0.93543 1.20292 1.26819 1.46379 1.13350 1.26361 1.19130 1.22198 0.90079 0.91078 1.00902 1.21398 0.95680 1.02935 0.97126 1.21659 1.00542 0.92856 0.94821 1.20896 0.91408 1.01781 1.01473 1.19722 0.97173 0.95277 0.89928 0.97308 0.93939 0.91793 0.92665 0.75859 0.85303 0.86437 0.77421 0.79360 0.78595 0.80861 0.83478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.90 9.26 71.98 0.67 -6.23 16 2 C 0.27 14.28 2.56 44.24 0.11 14.39 16 3 H -0.01 -0.47 7.58 -2.39 -0.02 -0.49 16 4 C -0.55 -28.89 8.73 25.60 0.22 -28.66 16 5 H 0.08 3.69 7.74 -2.91 -0.02 3.67 16 6 C 0.01 0.67 5.30 84.65 0.45 1.11 16 7 N -0.92 -53.55 11.32 21.45 0.24 -53.30 16 8 Si 0.97 41.87 29.54 68.60 2.03 43.89 16 9 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 10 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 12 N -0.71 -29.18 5.07 -446.12 -2.26 -31.44 16 13 C 0.50 19.95 7.79 87.66 0.68 20.63 16 14 O -0.60 -30.83 15.70 -3.02 -0.05 -30.88 16 15 C -0.04 -1.16 6.19 29.10 0.18 -0.98 16 16 C -0.25 -7.96 4.68 -19.62 -0.09 -8.05 16 17 C 0.08 2.46 11.87 84.82 1.01 3.47 16 18 N -0.36 -11.81 12.66 -57.54 -0.73 -12.54 16 19 N -0.29 -8.55 3.90 -187.79 -0.73 -9.28 16 20 C 0.08 1.68 11.19 83.20 0.93 2.61 16 21 C -0.15 -2.24 9.98 22.06 0.22 -2.02 16 22 C -0.08 -1.33 10.07 22.31 0.22 -1.11 16 23 C -0.14 -3.42 10.09 22.39 0.23 -3.20 16 24 C 0.10 3.05 6.76 39.11 0.26 3.32 16 25 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.06 3.64 6.07 -2.39 -0.01 3.63 16 28 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 29 H 0.41 13.63 8.54 -92.70 -0.79 12.84 16 30 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.21 5.00 8.06 -2.91 -0.02 4.97 16 33 H 0.19 2.68 8.06 -2.91 -0.02 2.66 16 34 H 0.20 1.08 8.06 -2.91 -0.02 1.06 16 35 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 36 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -79.34 315.06 3.90 -75.44 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.31 Total: 22.82 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 5.10 Total: -4.71 kcal Atomic # 7 Polarization: -103.08 SS G_CDS: -3.48 Total: -106.56 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -0.05 Total: -30.88 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -79.34 3.90 -75.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592755542.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.469 kcal (2) G-P(sol) polarization free energy of solvation -79.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds