Wall clock time and date at job start Mon Mar 30 2020 01:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47173 * 2 1 4 4 C 1.50698 * 109.46863 * 239.99872 * 2 1 3 5 5 H 1.08007 * 119.99689 * 239.99849 * 4 2 1 6 6 C 1.37871 * 120.00346 * 60.00150 * 4 2 1 7 7 N 1.31518 * 119.99606 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00389 * 179.97438 * 6 4 2 9 9 H 1.48511 * 109.46711 * 90.00141 * 8 6 4 10 10 H 1.48496 * 109.47660 * 209.99987 * 8 6 4 11 11 H 1.48497 * 109.46977 * 330.00527 * 8 6 4 12 12 N 1.46896 * 109.46753 * 119.99888 * 2 1 3 13 13 C 1.46901 * 111.00292 * 274.99621 * 12 2 1 14 14 C 1.50699 * 109.47255 * 180.02562 * 13 12 2 15 15 C 1.38132 * 119.96807 * 115.00206 * 14 13 12 16 16 C 1.39971 * 118.91943 * 179.97438 * 15 14 13 17 17 O 1.22088 * 120.51557 * 179.97438 * 16 15 14 18 18 N 1.35014 * 118.96119 * 0.02562 * 16 15 14 19 19 C 1.36185 * 119.65375 * 180.02562 * 18 16 15 20 20 C 1.35196 * 120.73974 * 180.27721 * 19 18 16 21 21 C 1.40192 * 120.15510 * 359.47662 * 20 19 18 22 22 C 1.36276 * 119.56490 * 0.46384 * 21 20 19 23 23 C 1.36712 * 119.87844 * 359.97438 * 18 16 15 24 24 N 1.32382 * 119.97257 * 295.02266 * 14 13 12 25 25 H 1.08998 * 109.47173 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47239 * 300.00110 * 1 2 3 27 27 H 1.09000 * 109.47024 * 60.00236 * 1 2 3 28 28 H 0.97003 * 119.99560 * 179.97438 * 7 6 4 29 29 H 1.00902 * 111.00143 * 151.04158 * 12 2 1 30 30 H 1.09007 * 109.46618 * 60.00260 * 13 12 2 31 31 H 1.08996 * 109.47058 * 300.00798 * 13 12 2 32 32 H 1.07995 * 120.53665 * 359.97438 * 15 14 13 33 33 H 1.08002 * 119.62523 * 359.97438 * 19 18 16 34 34 H 1.07997 * 119.91871 * 179.69669 * 20 19 18 35 35 H 1.08001 * 120.22012 * 180.27889 * 21 20 19 36 36 H 1.07998 * 120.27735 * 179.82219 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 1.3445 -2.1617 -4.4123 10 1 2.4872 -0.1405 -5.1120 11 1 3.6307 -1.7568 -3.7119 12 7 2.0196 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5884 -0.5215 3.5557 15 6 3.8015 -0.1776 4.1199 16 6 4.2501 -0.8829 5.2426 17 8 5.3180 -0.6036 5.7643 18 7 3.4838 -1.8776 5.7389 19 6 3.9064 -2.5727 6.8311 20 6 3.1593 -3.5766 7.3429 21 6 1.9290 -3.9077 6.7580 22 6 1.4965 -3.2175 5.6655 23 6 2.2905 -2.1796 5.1441 24 7 1.8702 -1.5045 4.0758 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7096 1.1617 -3.4844 29 1 2.9172 -1.1206 1.0288 30 1 1.0870 0.6164 2.5525 31 1 2.7588 1.0462 2.1182 32 1 4.3940 0.6225 3.7016 33 1 4.8512 -2.3224 7.2905 34 1 3.5095 -4.1223 8.2066 35 1 1.3293 -4.7064 7.1688 36 1 0.5520 -3.4648 5.2040 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593183078.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:19 Heat of formation + Delta-G solvation = 24.067033 kcal Electronic energy + Delta-G solvation = -20075.318569 eV Core-core repulsion = 16945.659560 eV Total energy + Delta-G solvation = -3129.659009 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.69142 -39.43197 -39.08380 -37.37536 -35.09925 -34.57781 -32.86881 -30.81272 -30.49870 -27.60508 -26.85810 -26.02957 -24.47237 -23.46660 -21.76587 -20.04755 -19.71166 -18.79927 -18.15882 -17.69390 -16.95122 -16.62223 -16.36900 -15.92716 -15.60794 -15.48852 -15.20120 -14.83719 -14.59284 -14.19565 -13.91095 -13.37227 -13.22037 -12.95895 -12.87799 -12.78404 -12.64928 -12.26736 -12.18529 -12.02012 -11.64957 -11.50792 -10.98063 -10.90289 -10.57424 -10.47760 -9.12661 -8.82670 -8.13309 -6.27307 -0.87605 -0.50899 0.86126 1.08711 1.43099 1.43643 1.54006 1.70675 2.41809 2.68417 2.85391 3.15460 3.16975 3.45537 3.55562 3.82086 3.90066 4.07553 4.23984 4.35461 4.48092 4.58821 4.62354 4.85127 4.91327 4.96188 5.04200 5.10931 5.11536 5.21219 5.38572 5.46328 5.55132 5.65482 5.84788 6.21680 6.39554 6.50864 6.65414 6.77429 6.94015 7.42604 8.92512 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028241 B = 0.003799 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.219113 B = 7368.999762 C = 7594.684944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.215 3.785 3 H -0.024 1.024 4 C -0.539 4.539 5 H 0.057 0.943 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.963 3.037 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.270 1.270 12 N -0.670 5.670 13 C 0.108 3.892 14 C 0.235 3.765 15 C -0.364 4.364 16 C 0.503 3.497 17 O -0.578 6.578 18 N -0.430 5.430 19 C 0.061 3.939 20 C -0.133 4.133 21 C -0.005 4.005 22 C -0.146 4.146 23 C 0.371 3.629 24 N -0.543 5.543 25 H 0.028 0.972 26 H 0.023 0.977 27 H 0.059 0.941 28 H 0.263 0.737 29 H 0.330 0.670 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.150 0.850 33 H 0.182 0.818 34 H 0.206 0.794 35 H 0.204 0.796 36 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.893 -11.376 22.253 25.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 H -0.006 1.006 4 C -0.577 4.577 5 H 0.075 0.925 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.788 3.212 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.195 1.195 12 N -0.301 5.301 13 C -0.022 4.022 14 C 0.102 3.898 15 C -0.390 4.390 16 C 0.312 3.688 17 O -0.462 6.462 18 N -0.131 5.131 19 C -0.062 4.062 20 C -0.153 4.153 21 C -0.029 4.029 22 C -0.166 4.166 23 C 0.131 3.869 24 N -0.268 5.268 25 H 0.047 0.953 26 H 0.042 0.958 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.146 0.854 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.168 0.832 33 H 0.199 0.801 34 H 0.223 0.777 35 H 0.221 0.779 36 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 0.162 -11.330 22.085 24.822 hybrid contribution 1.904 1.086 -1.193 2.496 sum 2.066 -10.244 20.891 23.359 Atomic orbital electron populations 1.21519 0.97293 0.98980 0.99131 1.18983 0.93048 0.91001 0.86224 1.00602 1.21534 1.31852 1.12724 0.91578 0.92501 1.25701 0.95127 0.95651 1.01926 1.70020 1.37364 1.23886 1.24244 0.85483 0.78781 0.78240 0.78657 1.19976 1.20776 1.19455 1.60603 1.32027 1.32652 1.04768 1.20852 1.01062 0.92853 0.87402 1.21406 0.88390 0.87985 0.92028 1.22581 1.01946 1.11109 1.03372 1.17090 0.84838 0.80661 0.86236 1.90912 1.23004 1.68699 1.63632 1.44354 1.17714 1.27206 1.23848 1.22818 1.02291 0.93741 0.87304 1.21695 0.94563 0.96214 1.02852 1.22192 0.94233 0.96150 0.90310 1.21387 1.01828 0.94137 0.99276 1.21402 0.82326 0.94607 0.88599 1.68830 1.33978 1.12506 1.11440 0.95319 0.95788 0.92264 0.92743 0.85357 0.89435 0.93554 0.83237 0.80134 0.77733 0.77907 0.80366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.64 9.19 71.98 0.66 -4.98 16 2 C 0.22 11.26 2.60 44.17 0.11 11.38 16 3 H -0.02 -1.34 7.80 -2.39 -0.02 -1.35 16 4 C -0.54 -30.20 8.59 25.60 0.22 -29.98 16 5 H 0.06 3.15 7.62 -2.91 -0.02 3.13 16 6 C 0.02 0.86 5.30 84.65 0.45 1.31 16 7 N -0.92 -53.11 11.32 21.45 0.24 -52.86 16 8 Si 0.96 44.00 29.54 68.60 2.03 46.02 16 9 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 N -0.67 -30.08 6.29 -499.47 -3.14 -33.22 16 13 C 0.11 4.19 5.88 85.56 0.50 4.69 16 14 C 0.23 8.35 6.32 42.45 0.27 8.62 16 15 C -0.36 -12.79 9.69 22.66 0.22 -12.57 16 16 C 0.50 17.04 7.36 84.62 0.62 17.66 16 17 O -0.58 -21.95 16.69 -5.60 -0.09 -22.04 16 18 N -0.43 -11.16 2.76 -478.63 -1.32 -12.48 16 19 C 0.06 0.99 10.08 83.32 0.84 1.83 16 20 C -0.13 -0.84 9.99 22.04 0.22 -0.62 16 21 C -0.01 -0.03 10.07 22.29 0.22 0.19 16 22 C -0.15 -2.20 9.96 22.41 0.22 -1.97 16 23 C 0.37 9.55 7.33 133.98 0.98 10.53 16 24 N -0.54 -18.01 10.25 -180.99 -1.86 -19.87 16 25 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.02 1.08 7.45 -2.39 -0.02 1.06 16 27 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 28 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 29 H 0.33 14.86 8.22 -89.69 -0.74 14.13 16 30 H 0.09 3.38 7.44 -2.38 -0.02 3.36 16 31 H 0.05 1.76 7.81 -2.39 -0.02 1.74 16 32 H 0.15 5.18 7.97 -2.91 -0.02 5.15 16 33 H 0.18 2.78 7.34 -2.91 -0.02 2.75 16 34 H 0.21 -0.59 8.06 -2.91 -0.02 -0.61 16 35 H 0.20 -0.78 8.06 -2.91 -0.02 -0.81 16 36 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -75.69 308.87 1.77 -73.92 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.37 Total: 14.45 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 5.55 Total: 6.08 kcal Atomic # 7 Polarization: -112.36 SS G_CDS: -6.08 Total: -118.43 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.09 Total: -22.04 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -75.69 1.77 -73.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593183078.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.986 kcal (2) G-P(sol) polarization free energy of solvation -75.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds