Wall clock time and date at job start Mon Mar 30 2020 02:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86801 * 119.99606 * 2 1 4 4 H 1.48499 * 109.47111 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47149 * 300.00451 * 3 2 1 6 6 H 1.48504 * 109.46823 * 60.00335 * 3 2 1 7 7 C 1.37876 * 120.00306 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99832 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99762 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.53293 * 59.90711 * 9 7 2 11 11 C 1.53116 * 109.50467 * 299.80733 * 9 7 2 12 12 C 1.53120 * 109.15796 * 182.40622 * 11 9 7 13 13 C 1.53041 * 109.27937 * 57.65636 * 12 11 9 14 14 N 1.46845 * 109.51785 * 300.81844 * 13 12 11 15 15 C 1.39097 * 110.99642 * 185.84194 * 14 13 12 16 16 C 1.40872 * 119.59179 * 55.81144 * 15 14 13 17 17 C 1.35908 * 120.09768 * 179.97438 * 16 15 14 18 18 C 1.40794 * 119.13475 * 0.02562 * 17 16 15 19 19 N 1.32369 * 133.77383 * 180.02562 * 18 17 16 20 20 N 1.28751 * 109.23286 * 179.97438 * 19 18 17 21 21 C 1.31036 * 110.16357 * 0.02562 * 20 19 18 22 22 N 1.34984 * 107.68689 * 359.97438 * 21 20 19 23 23 N 1.31244 * 119.58812 * 235.78942 * 15 14 13 24 24 C 1.46846 * 111.20057 * 61.74757 * 14 13 12 25 25 H 0.96995 * 120.00334 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.51944 * 302.30718 * 11 9 7 27 27 H 1.08996 * 109.52499 * 62.50255 * 11 9 7 28 28 H 1.09001 * 109.50061 * 177.59111 * 12 11 9 29 29 H 1.09000 * 109.50588 * 297.67217 * 12 11 9 30 30 H 1.08997 * 109.45794 * 180.80506 * 13 12 11 31 31 H 1.09003 * 109.46406 * 60.83332 * 13 12 11 32 32 H 1.08002 * 119.94763 * 359.97438 * 16 15 14 33 33 H 1.08002 * 120.43116 * 180.02562 * 17 16 15 34 34 H 1.08007 * 126.15499 * 179.97438 * 21 20 19 35 35 H 1.09000 * 109.46649 * 58.26780 * 24 14 13 36 36 H 1.09001 * 109.46140 * 178.25095 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6225 -2.5570 -0.8891 11 6 0.3747 -2.5835 1.2521 12 6 -0.3408 -3.9370 1.2746 13 6 0.6993 -5.0591 1.2372 14 7 1.5115 -4.9347 0.0201 15 6 2.3798 -6.0133 -0.1119 16 6 1.8650 -7.3246 -0.1148 17 6 2.7041 -8.3859 -0.2438 18 6 4.0869 -8.1548 -0.3729 19 7 5.1386 -8.9464 -0.5122 20 7 6.2036 -8.2271 -0.5892 21 6 5.8973 -6.9559 -0.5042 22 7 4.5576 -6.8653 -0.3656 23 7 3.6686 -5.7966 -0.2327 24 6 2.2451 -3.6628 -0.0011 25 1 -0.4850 0.8400 0.0004 26 1 0.9988 -2.4866 2.1405 27 1 -0.3633 -1.7816 1.2350 28 1 -0.9332 -4.0203 2.1858 29 1 -0.9950 -4.0173 0.4065 30 1 0.1925 -6.0241 1.2386 31 1 1.3440 -4.9861 2.1131 32 1 0.8019 -7.4866 -0.0145 33 1 2.3152 -9.3935 -0.2471 34 1 6.5917 -6.1294 -0.5389 35 1 2.8825 -3.5964 0.8806 36 1 2.8610 -3.6138 -0.8991 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596322215.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:19 Heat of formation + Delta-G solvation = 133.263308 kcal Electronic energy + Delta-G solvation = -20707.572057 eV Core-core repulsion = 17614.940906 eV Total energy + Delta-G solvation = -3092.631152 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.38627 -41.23762 -38.73262 -35.80082 -34.91185 -33.93590 -32.02590 -31.41889 -31.01374 -27.22935 -26.34491 -25.18232 -23.70964 -23.30931 -23.11269 -20.63049 -19.79731 -19.02921 -18.29413 -17.75764 -17.63635 -16.67169 -16.23941 -15.75948 -15.53176 -15.09435 -14.82274 -14.72349 -14.35030 -14.18479 -13.90600 -13.44763 -13.34103 -12.89701 -12.74838 -12.57475 -12.46353 -12.06355 -11.89317 -11.82468 -11.66901 -11.40388 -11.33183 -11.05364 -10.71574 -10.40852 -9.80867 -9.71175 -8.11967 -6.24682 -0.68577 0.06441 0.65137 1.38771 1.42304 1.47937 1.52036 1.98546 2.32778 2.47550 2.93783 3.06638 3.16572 3.53252 3.68950 3.98027 4.02366 4.13861 4.29598 4.34254 4.50259 4.53081 4.64135 4.67221 4.76993 4.80006 4.89967 4.96605 5.03902 5.10884 5.27091 5.44769 5.62182 5.64720 5.86506 5.99142 6.12339 6.34238 6.48620 6.85387 7.25060 7.43423 8.92847 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.026137 B = 0.004710 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.029677 B = 5943.164496 C = 6874.129287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 0.948 3.052 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.537 4.537 8 H 0.047 0.953 9 C 0.052 3.948 10 H 0.005 0.995 11 C -0.111 4.111 12 C -0.111 4.111 13 C 0.064 3.936 14 N -0.455 5.455 15 C 0.341 3.659 16 C -0.139 4.139 17 C 0.001 3.999 18 C 0.119 3.881 19 N -0.287 5.287 20 N -0.294 5.294 21 C 0.177 3.823 22 N -0.293 5.293 23 N -0.342 5.342 24 C 0.088 3.912 25 H 0.262 0.738 26 H 0.027 0.973 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.127 0.873 31 H 0.048 0.952 32 H 0.206 0.794 33 H 0.211 0.789 34 H 0.255 0.745 35 H 0.035 0.965 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.596 -14.081 2.851 14.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.178 4.178 3 Si 0.774 3.226 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.576 4.576 8 H 0.065 0.935 9 C 0.033 3.967 10 H 0.023 0.977 11 C -0.150 4.150 12 C -0.148 4.148 13 C -0.060 4.060 14 N -0.174 5.174 15 C 0.076 3.924 16 C -0.166 4.166 17 C -0.026 4.026 18 C -0.137 4.137 19 N -0.136 5.136 20 N -0.137 5.137 21 C -0.109 4.109 22 N -0.069 5.069 23 N -0.166 5.166 24 C -0.039 4.039 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.083 0.917 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.145 0.855 31 H 0.066 0.934 32 H 0.223 0.777 33 H 0.228 0.772 34 H 0.271 0.729 35 H 0.053 0.947 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.478 -14.413 2.294 14.602 hybrid contribution 0.054 2.084 0.318 2.109 sum 0.533 -12.329 2.612 12.614 Atomic orbital electron populations 1.69993 1.06847 1.27120 1.50934 1.25583 0.95631 1.01898 0.94686 0.85655 0.79015 0.80192 0.77689 1.19647 1.20702 1.20419 1.21444 0.92869 0.92095 1.51151 0.93472 1.18656 0.92759 0.90598 0.94700 0.97682 1.21548 0.99290 0.97095 0.97024 1.21651 0.97050 0.93307 1.02830 1.22494 0.94786 1.02361 0.86404 1.59290 1.19493 1.00969 1.37678 1.21556 0.87582 0.93946 0.89282 1.21803 1.04590 0.87962 1.02250 1.20938 0.85038 1.03487 0.93137 1.23262 0.98927 0.82671 1.08810 1.74842 0.94029 1.24938 1.19741 1.74472 1.20480 1.00223 1.18510 1.26779 0.80967 0.98925 1.04228 1.47582 1.07796 1.05242 1.46239 1.76024 1.02139 1.08808 1.29612 1.21999 0.95351 0.86427 1.00086 0.92909 0.95431 0.91744 0.89117 0.91619 0.85467 0.93397 0.77726 0.77187 0.72939 0.94663 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.97 11.36 21.45 0.24 -49.73 16 2 C 0.02 1.15 5.30 84.65 0.45 1.60 16 3 Si 0.95 42.46 29.54 68.60 2.03 44.49 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.54 -28.56 8.56 25.60 0.22 -28.34 16 8 H 0.05 2.52 7.74 -2.91 -0.02 2.50 16 9 C 0.05 2.42 2.26 -11.49 -0.03 2.40 16 10 H 0.01 0.26 8.14 -2.39 -0.02 0.25 16 11 C -0.11 -4.68 5.03 30.67 0.15 -4.52 16 12 C -0.11 -3.26 6.09 30.65 0.19 -3.07 16 13 C 0.06 1.56 5.25 86.33 0.45 2.01 16 14 N -0.46 -13.85 4.68 -701.09 -3.28 -17.13 16 15 C 0.34 9.32 6.51 133.80 0.87 10.20 16 16 C -0.14 -2.46 9.11 22.37 0.20 -2.26 16 17 C 0.00 0.02 10.11 22.35 0.23 0.25 16 18 C 0.12 3.27 7.99 134.06 1.07 4.34 16 19 N -0.29 -8.96 12.33 -55.42 -0.68 -9.64 16 20 N -0.29 -9.18 12.21 -60.02 -0.73 -9.91 16 21 C 0.18 4.92 13.16 180.12 2.37 7.29 16 22 N -0.29 -8.85 4.02 -196.31 -0.79 -9.64 16 23 N -0.34 -10.97 10.23 -54.82 -0.56 -11.53 16 24 C 0.09 3.48 3.87 86.33 0.33 3.81 16 25 H 0.26 13.69 8.31 -92.71 -0.77 12.92 16 26 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.06 3.14 6.17 -2.39 -0.01 3.12 16 28 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.13 1.86 6.66 -2.39 -0.02 1.85 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.21 1.81 7.14 -2.91 -0.02 1.78 16 33 H 0.21 1.84 8.06 -2.91 -0.02 1.81 16 34 H 0.25 5.03 8.06 -2.91 -0.02 5.01 16 35 H 0.04 1.44 8.11 -2.39 -0.02 1.42 16 36 H 0.06 2.46 7.70 -2.39 -0.02 2.44 16 Total: -1.00 -68.16 297.61 3.83 -64.34 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: 1.09 Total: 5.06 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 6.51 Total: -6.30 kcal Atomic # 7 Polarization: -101.78 SS G_CDS: -5.81 Total: -107.58 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -68.16 3.83 -64.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596322215.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.599 kcal (2) G-P(sol) polarization free energy of solvation -68.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds