Wall clock time and date at job start Mon Mar 30 2020 02:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99889 * 2 1 4 4 H 1.48495 * 109.47494 * 270.00300 * 3 2 1 5 5 H 1.48492 * 109.47125 * 30.00976 * 3 2 1 6 6 H 1.48506 * 109.46783 * 150.00459 * 3 2 1 7 7 C 1.37879 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00047 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99745 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.49685 * 59.93256 * 9 7 2 11 11 C 1.53110 * 109.50616 * 299.81226 * 9 7 2 12 12 C 1.53126 * 109.15945 * 182.40763 * 11 9 7 13 13 C 1.53040 * 109.28021 * 57.64986 * 12 11 9 14 14 N 1.46845 * 109.52077 * 300.82472 * 13 12 11 15 15 C 1.38417 * 110.99593 * 185.84195 * 14 13 12 16 16 C 1.36484 * 120.23266 * 235.78965 * 15 14 13 17 17 N 1.32996 * 120.99846 * 180.25771 * 16 15 14 18 18 C 1.31347 * 121.38111 * 359.44320 * 17 16 15 19 19 C 1.40554 * 119.83783 * 0.53097 * 18 17 16 20 20 N 1.32650 * 133.77077 * 179.75751 * 19 18 17 21 21 C 1.32550 * 109.70810 * 179.97438 * 20 19 18 22 22 N 1.31351 * 109.66751 * 0.02562 * 21 20 19 23 23 N 1.36334 * 120.23722 * 55.76483 * 15 14 13 24 24 C 1.46839 * 111.20157 * 61.74251 * 14 13 12 25 25 H 0.97001 * 119.99602 * 359.97438 * 1 2 3 26 26 H 1.09008 * 109.52006 * 302.30538 * 11 9 7 27 27 H 1.08998 * 109.52855 * 62.49762 * 11 9 7 28 28 H 1.09000 * 109.50220 * 177.59250 * 12 11 9 29 29 H 1.08996 * 109.49900 * 297.66689 * 12 11 9 30 30 H 1.08997 * 109.46185 * 180.80421 * 13 12 11 31 31 H 1.08997 * 109.45736 * 60.83781 * 13 12 11 32 32 H 1.08002 * 119.49829 * 359.97213 * 16 15 14 33 33 H 1.07998 * 120.08039 * 180.28646 * 18 17 16 34 34 H 1.07994 * 125.16942 * 180.02562 * 21 20 19 35 35 H 1.09000 * 109.46626 * 58.27203 * 24 14 13 36 36 H 1.09003 * 109.46331 * 178.23769 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6230 -2.5566 -0.8896 11 6 0.3745 -2.5834 1.2520 12 6 -0.3411 -3.9370 1.2745 13 6 0.6989 -5.0591 1.2370 14 7 1.5112 -4.9347 0.0201 15 6 2.3753 -6.0081 -0.1113 16 6 3.7179 -5.7980 -0.2376 17 7 4.5613 -6.8179 -0.3698 18 6 4.1365 -8.0607 -0.3729 19 6 2.7630 -8.3307 -0.2455 20 7 2.0457 -9.4461 -0.2187 21 6 0.7618 -9.1486 -0.0767 22 7 0.6149 -7.8451 -0.0089 23 7 1.8913 -7.2826 -0.1149 24 6 2.2449 -3.6629 -0.0011 25 1 -0.4849 0.8401 0.0004 26 1 0.9986 -2.4865 2.1405 27 1 -0.3635 -1.7814 1.2349 28 1 -0.9336 -4.0202 2.1856 29 1 -0.9953 -4.0171 0.4064 30 1 0.1922 -6.0241 1.2385 31 1 1.3435 -4.9861 2.1130 32 1 4.1008 -4.7882 -0.2347 33 1 4.8405 -8.8731 -0.4770 34 1 -0.0415 -9.8686 -0.0246 35 1 2.8823 -3.5966 0.8806 36 1 2.8611 -3.6140 -0.8989 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596328027.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:54 Heat of formation + Delta-G solvation = 145.320557 kcal Electronic energy + Delta-G solvation = -21041.141805 eV Core-core repulsion = 17949.033495 eV Total energy + Delta-G solvation = -3092.108310 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.98846 -39.83701 -38.06100 -34.87557 -33.12220 -32.16946 -31.45030 -30.25224 -29.00875 -25.45818 -25.13317 -24.13950 -23.22176 -21.70055 -21.37611 -19.21627 -18.27544 -17.77232 -17.08876 -16.48229 -15.97212 -15.65631 -14.76578 -14.62482 -14.40201 -14.26866 -13.44698 -13.22924 -12.93484 -12.80170 -12.69307 -12.27057 -11.87592 -11.62960 -11.10242 -10.96997 -10.85115 -10.49712 -10.39091 -10.19807 -10.05056 -10.00545 -9.78073 -9.48987 -9.25273 -8.91798 -8.46952 -7.75594 -6.14575 -4.22519 0.49648 0.81969 1.75235 2.60018 3.22490 3.29859 3.30963 3.35021 3.56958 3.78436 4.13302 4.31562 4.41818 4.64487 4.90539 5.16179 5.29505 5.34393 5.40417 5.65611 5.77966 5.79545 5.91566 6.04388 6.09205 6.21197 6.26915 6.37354 6.42679 6.55449 6.80147 6.94318 7.10052 7.24541 7.56187 7.58959 7.78203 7.80445 7.92420 8.21168 8.80178 9.43476 10.91689 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.032052 B = 0.004890 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.373371 B = 5724.680342 C = 6437.192335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.066 3.934 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.056 3.944 10 H 0.039 0.961 11 C -0.115 4.115 12 C -0.117 4.117 13 C 0.059 3.941 14 N -0.472 5.472 15 C 0.330 3.670 16 C -0.048 4.048 17 N -0.391 5.391 18 C 0.096 3.904 19 C 0.253 3.747 20 N -0.536 5.536 21 C 0.232 3.768 22 N -0.325 5.325 23 N -0.282 5.282 24 C 0.059 3.941 25 H 0.262 0.738 26 H 0.036 0.964 27 H 0.098 0.902 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.195 0.805 33 H 0.189 0.811 34 H 0.227 0.773 35 H 0.051 0.949 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.258 -13.017 1.850 13.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.077 0.923 9 C 0.037 3.963 10 H 0.057 0.943 11 C -0.153 4.153 12 C -0.155 4.155 13 C -0.065 4.065 14 N -0.185 5.185 15 C 0.116 3.884 16 C -0.199 4.199 17 N -0.103 5.103 18 C -0.086 4.086 19 C -0.004 4.004 20 N -0.268 5.268 21 C -0.069 4.069 22 N -0.155 5.155 23 N -0.064 5.064 24 C -0.066 4.066 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.116 0.884 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.211 0.789 33 H 0.206 0.794 34 H 0.243 0.757 35 H 0.070 0.930 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.830 -12.540 1.478 12.940 hybrid contribution -0.075 0.765 0.456 0.894 sum 2.756 -11.774 1.934 12.246 Atomic orbital electron populations 1.69878 1.05945 1.26749 1.49813 1.24925 0.94857 0.99169 0.94671 0.86554 0.79826 0.83185 0.78228 1.20570 1.21187 1.19819 1.21013 0.92945 0.90046 1.51934 0.92346 1.18732 0.92373 0.89767 0.95409 0.94320 1.21753 1.00326 0.94744 0.98510 1.21729 0.96852 0.95613 1.01316 1.22392 0.95613 1.01893 0.86626 1.58264 1.21851 1.01579 1.36792 1.20126 0.91358 0.81145 0.95806 1.22653 0.85209 1.00605 1.11456 1.67850 1.37665 0.98715 1.06042 1.22490 0.88165 0.94916 1.02988 1.23076 0.94787 0.83525 0.98984 1.70791 1.03020 1.24705 1.28292 1.26324 0.94299 0.91903 0.94364 1.78564 0.95678 1.09873 1.31407 1.47863 1.07233 1.06227 1.45031 1.22877 0.97371 0.85267 1.01081 0.92781 0.94484 0.88385 0.92294 0.91545 0.89636 0.93881 0.78860 0.79444 0.75657 0.93036 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.83 11.36 55.43 0.63 -23.20 16 2 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 20.07 29.54 -169.99 -5.02 15.04 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.52 -13.04 8.56 -34.44 -0.29 -13.34 16 8 H 0.06 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.06 1.27 2.26 -91.69 -0.21 1.07 16 10 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 11 C -0.12 -2.49 5.03 -26.61 -0.13 -2.62 16 12 C -0.12 -2.14 6.09 -26.65 -0.16 -2.30 16 13 C 0.06 1.01 5.33 -3.83 -0.02 0.99 16 14 N -0.47 -8.40 4.72 -173.11 -0.82 -9.21 16 15 C 0.33 5.42 6.46 -153.08 -0.99 4.43 16 16 C -0.05 -0.71 9.91 -17.68 -0.18 -0.88 16 17 N -0.39 -5.44 10.41 -12.94 -0.13 -5.58 16 18 C 0.10 1.21 11.32 -16.89 -0.19 1.02 16 19 C 0.25 3.74 7.92 -156.24 -1.24 2.50 16 20 N -0.54 -7.66 11.24 -13.96 -0.16 -7.82 16 21 C 0.23 3.01 12.98 -91.88 -1.19 1.82 16 22 N -0.32 -5.14 10.91 29.27 0.32 -4.82 16 23 N -0.28 -4.60 3.77 -11.60 -0.04 -4.64 16 24 C 0.06 1.09 3.36 -3.84 -0.01 1.07 16 25 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 26 H 0.04 0.79 8.14 -51.92 -0.42 0.36 16 27 H 0.10 2.40 6.16 -51.93 -0.32 2.08 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.09 1.45 6.03 -51.93 -0.31 1.14 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.19 2.65 5.67 -52.49 -0.30 2.36 16 33 H 0.19 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.23 1.83 8.06 -52.49 -0.42 1.40 16 35 H 0.05 0.91 7.71 -51.93 -0.40 0.51 16 36 H 0.08 1.42 6.96 -51.93 -0.36 1.06 16 LS Contribution 293.21 15.07 4.42 4.42 Total: -1.00 -28.40 293.21 -9.71 -38.11 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -4.19 Total: 2.32 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -4.71 Total: -4.63 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.20 Total: -55.27 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.40 -9.71 -38.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596328027.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.432 kcal (2) G-P(sol) polarization free energy of solvation -28.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds