Wall clock time and date at job start Mon Mar 30 2020 02:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99889 * 2 1 4 4 H 1.48495 * 109.47494 * 270.00300 * 3 2 1 5 5 H 1.48492 * 109.47125 * 30.00976 * 3 2 1 6 6 H 1.48506 * 109.46783 * 150.00459 * 3 2 1 7 7 C 1.37879 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00047 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99745 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.49685 * 59.93256 * 9 7 2 11 11 C 1.53110 * 109.50616 * 299.81226 * 9 7 2 12 12 C 1.53126 * 109.15945 * 182.40763 * 11 9 7 13 13 C 1.53040 * 109.28021 * 57.64986 * 12 11 9 14 14 N 1.46845 * 109.52077 * 300.82472 * 13 12 11 15 15 C 1.38417 * 110.99593 * 185.84195 * 14 13 12 16 16 C 1.36484 * 120.23266 * 235.78965 * 15 14 13 17 17 N 1.32996 * 120.99846 * 180.25771 * 16 15 14 18 18 C 1.31347 * 121.38111 * 359.44320 * 17 16 15 19 19 C 1.40554 * 119.83783 * 0.53097 * 18 17 16 20 20 N 1.32650 * 133.77077 * 179.75751 * 19 18 17 21 21 C 1.32550 * 109.70810 * 179.97438 * 20 19 18 22 22 N 1.31351 * 109.66751 * 0.02562 * 21 20 19 23 23 N 1.36334 * 120.23722 * 55.76483 * 15 14 13 24 24 C 1.46839 * 111.20157 * 61.74251 * 14 13 12 25 25 H 0.97001 * 119.99602 * 359.97438 * 1 2 3 26 26 H 1.09008 * 109.52006 * 302.30538 * 11 9 7 27 27 H 1.08998 * 109.52855 * 62.49762 * 11 9 7 28 28 H 1.09000 * 109.50220 * 177.59250 * 12 11 9 29 29 H 1.08996 * 109.49900 * 297.66689 * 12 11 9 30 30 H 1.08997 * 109.46185 * 180.80421 * 13 12 11 31 31 H 1.08997 * 109.45736 * 60.83781 * 13 12 11 32 32 H 1.08002 * 119.49829 * 359.97213 * 16 15 14 33 33 H 1.07998 * 120.08039 * 180.28646 * 18 17 16 34 34 H 1.07994 * 125.16942 * 180.02562 * 21 20 19 35 35 H 1.09000 * 109.46626 * 58.27203 * 24 14 13 36 36 H 1.09003 * 109.46331 * 178.23769 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6230 -2.5566 -0.8896 11 6 0.3745 -2.5834 1.2520 12 6 -0.3411 -3.9370 1.2745 13 6 0.6989 -5.0591 1.2370 14 7 1.5112 -4.9347 0.0201 15 6 2.3753 -6.0081 -0.1113 16 6 3.7179 -5.7980 -0.2376 17 7 4.5613 -6.8179 -0.3698 18 6 4.1365 -8.0607 -0.3729 19 6 2.7630 -8.3307 -0.2455 20 7 2.0457 -9.4461 -0.2187 21 6 0.7618 -9.1486 -0.0767 22 7 0.6149 -7.8451 -0.0089 23 7 1.8913 -7.2826 -0.1149 24 6 2.2449 -3.6629 -0.0011 25 1 -0.4849 0.8401 0.0004 26 1 0.9986 -2.4865 2.1405 27 1 -0.3635 -1.7814 1.2349 28 1 -0.9336 -4.0202 2.1856 29 1 -0.9953 -4.0171 0.4064 30 1 0.1922 -6.0241 1.2385 31 1 1.3435 -4.9861 2.1130 32 1 4.1008 -4.7882 -0.2347 33 1 4.8405 -8.8731 -0.4770 34 1 -0.0415 -9.8686 -0.0246 35 1 2.8823 -3.5966 0.8806 36 1 2.8611 -3.6140 -0.8989 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596328027.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:54 Heat of formation + Delta-G solvation = 129.527243 kcal Electronic energy + Delta-G solvation = -21041.826655 eV Core-core repulsion = 17949.033495 eV Total energy + Delta-G solvation = -3092.793160 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.09988 -41.11244 -39.30379 -36.35796 -34.63916 -33.60736 -32.56913 -31.93336 -30.21727 -27.19150 -26.40803 -25.41420 -24.48177 -23.22355 -22.59915 -20.76736 -19.50998 -18.91981 -18.64489 -17.64582 -17.55116 -16.76084 -16.51402 -15.92509 -15.67018 -15.53210 -14.99544 -14.55824 -14.37192 -14.27545 -14.08044 -13.67096 -13.14638 -12.90326 -12.82337 -12.67533 -12.58129 -12.03635 -11.88718 -11.65357 -11.47987 -11.30115 -11.13988 -11.05375 -10.84141 -10.49496 -10.37173 -8.95064 -8.10529 -6.24490 -0.60903 -0.29616 0.63751 1.44343 1.46353 1.54576 1.55179 2.16643 2.37230 2.47854 2.75975 3.03054 3.18930 3.36742 3.60127 3.75285 3.92254 4.00262 4.22742 4.32164 4.33942 4.39184 4.64316 4.71704 4.78041 4.84630 4.96052 4.99887 5.06686 5.25637 5.28517 5.38139 5.61230 5.65291 5.74447 5.93210 6.07261 6.31154 6.48653 6.72072 6.86495 7.44567 8.94792 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.032052 B = 0.004890 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.373371 B = 5724.680342 C = 6437.192335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.017 3.983 3 Si 0.954 3.046 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.532 4.532 8 H 0.064 0.936 9 C 0.054 3.946 10 H -0.002 1.002 11 C -0.107 4.107 12 C -0.107 4.107 13 C 0.068 3.932 14 N -0.487 5.487 15 C 0.304 3.696 16 C -0.039 4.039 17 N -0.401 5.401 18 C 0.122 3.878 19 C 0.238 3.762 20 N -0.539 5.539 21 C 0.239 3.761 22 N -0.356 5.356 23 N -0.291 5.291 24 C 0.074 3.926 25 H 0.260 0.740 26 H 0.036 0.964 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.201 0.799 33 H 0.228 0.772 34 H 0.269 0.731 35 H 0.062 0.938 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.809 -14.776 2.204 15.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.182 4.182 3 Si 0.780 3.220 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.571 4.571 8 H 0.082 0.918 9 C 0.035 3.965 10 H 0.017 0.983 11 C -0.145 4.145 12 C -0.145 4.145 13 C -0.057 4.057 14 N -0.200 5.200 15 C 0.091 3.909 16 C -0.188 4.188 17 N -0.113 5.113 18 C -0.060 4.060 19 C -0.019 4.019 20 N -0.271 5.271 21 C -0.061 4.061 22 N -0.187 5.187 23 N -0.073 5.073 24 C -0.051 4.051 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.218 0.782 33 H 0.244 0.756 34 H 0.285 0.715 35 H 0.080 0.920 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.403 -14.306 1.830 15.080 hybrid contribution -0.522 1.133 0.318 1.287 sum 3.881 -13.173 2.148 13.900 Atomic orbital electron populations 1.70029 1.07296 1.27192 1.51001 1.25686 0.95548 1.02351 0.94663 0.85608 0.78880 0.79398 0.78084 1.20473 1.21380 1.18793 1.21425 0.93444 0.91190 1.51029 0.91753 1.18615 0.92796 0.91004 0.94104 0.98345 1.21543 0.99495 0.95617 0.97886 1.21591 0.96960 0.94279 1.01672 1.22273 0.95267 1.01133 0.87002 1.58179 1.22594 1.01623 1.37654 1.20075 0.91590 0.80952 0.98252 1.22799 0.84770 1.01334 1.09945 1.67969 1.37158 0.98990 1.07172 1.23255 0.87982 0.95432 0.99367 1.23582 0.95500 0.83473 0.99318 1.70837 1.03549 1.24445 1.28283 1.27184 0.94857 0.91686 0.92379 1.78528 0.96198 1.11284 1.32733 1.47934 1.07692 1.06338 1.45303 1.22537 0.96148 0.84550 1.01861 0.93062 0.94473 0.91697 0.90141 0.93126 0.89258 0.93250 0.78225 0.75566 0.71547 0.92024 0.89538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.88 11.36 21.45 0.24 -50.64 16 2 C 0.02 0.88 5.30 84.65 0.45 1.33 16 3 Si 0.95 41.45 29.54 68.60 2.03 43.47 16 4 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.53 -27.02 8.56 25.60 0.22 -26.81 16 8 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 9 C 0.05 2.51 2.26 -11.49 -0.03 2.48 16 10 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 11 C -0.11 -4.75 5.03 30.67 0.15 -4.60 16 12 C -0.11 -3.95 6.09 30.65 0.19 -3.76 16 13 C 0.07 2.28 5.33 86.33 0.46 2.74 16 14 N -0.49 -17.20 4.72 -701.60 -3.31 -20.51 16 15 C 0.30 9.66 6.46 131.42 0.85 10.51 16 16 C -0.04 -1.08 9.91 84.11 0.83 -0.25 16 17 N -0.40 -10.13 10.41 -194.86 -2.03 -12.16 16 18 C 0.12 2.69 11.32 85.33 0.97 3.65 16 19 C 0.24 6.44 7.92 134.03 1.06 7.50 16 20 N -0.54 -13.92 11.24 -198.08 -2.23 -16.14 16 21 C 0.24 5.59 12.98 180.79 2.35 7.94 16 22 N -0.36 -10.75 10.91 -61.30 -0.67 -11.42 16 23 N -0.29 -9.05 3.77 -190.61 -0.72 -9.77 16 24 C 0.07 2.75 3.36 86.33 0.29 3.04 16 25 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 26 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.06 3.31 6.16 -2.39 -0.01 3.30 16 28 H 0.08 2.57 8.14 -2.39 -0.02 2.56 16 29 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.09 2.97 6.03 -2.39 -0.01 2.96 16 31 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.20 5.19 5.67 -2.91 -0.02 5.17 16 33 H 0.23 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.27 3.40 8.06 -2.91 -0.02 3.38 16 35 H 0.06 2.13 7.71 -2.39 -0.02 2.11 16 36 H 0.09 3.05 6.96 -2.39 -0.02 3.03 16 Total: -1.00 -62.15 293.21 2.21 -59.93 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 1.10 Total: 13.45 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 7.79 Total: 3.78 kcal Atomic # 7 Polarization: -111.93 SS G_CDS: -8.71 Total: -120.64 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.47 kcal Total: -62.15 2.21 -59.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596328027.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.460 kcal (2) G-P(sol) polarization free energy of solvation -62.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds