Wall clock time and date at job start Mon Mar 30 2020 01:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.47309 * 2 1 4 4 C 1.50698 * 109.47348 * 239.99787 * 2 1 3 5 5 H 1.07999 * 119.99948 * 239.99941 * 4 2 1 6 6 C 1.37875 * 119.99871 * 59.99744 * 4 2 1 7 7 N 1.31517 * 120.00203 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99826 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46774 * 90.00231 * 8 6 4 10 10 H 1.48497 * 109.46827 * 210.00026 * 8 6 4 11 11 H 1.48498 * 109.47227 * 330.00219 * 8 6 4 12 12 N 1.46898 * 109.47049 * 119.99582 * 2 1 3 13 13 C 1.46906 * 111.00113 * 274.99962 * 12 2 1 14 14 C 1.50701 * 109.47227 * 180.02562 * 13 12 2 15 15 O 1.21283 * 120.00004 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00366 * 180.02562 * 14 13 12 17 17 C 1.39539 * 120.00393 * 174.72923 * 16 14 13 18 18 C 1.39108 * 119.91860 * 326.31136 * 17 16 14 19 19 C 1.37697 * 120.08036 * 179.72507 * 18 17 16 20 20 C 1.39771 * 119.91809 * 0.57524 * 19 18 17 21 21 C 1.43196 * 120.07970 * 179.68374 * 20 19 18 22 22 N 9.74313 * 137.65529 * 159.86894 * 12 1 2 23 23 C 1.39775 * 119.84240 * 359.70254 * 20 19 18 24 24 C 1.37695 * 119.91636 * 359.97438 * 23 20 19 25 25 H 1.08993 * 109.47160 * 300.00047 * 1 2 3 26 26 H 1.08999 * 109.46760 * 60.00292 * 1 2 3 27 27 H 1.09000 * 109.46484 * 180.02562 * 1 2 3 28 28 H 0.96993 * 119.99828 * 179.97438 * 7 6 4 29 29 H 1.00903 * 111.00179 * 151.05062 * 12 2 1 30 30 H 1.09000 * 109.47159 * 300.00364 * 13 12 2 31 31 H 1.08999 * 109.46707 * 60.00413 * 13 12 2 32 32 H 0.97002 * 119.99353 * 354.72324 * 16 14 13 33 33 H 1.08001 * 119.95580 * 0.02562 * 18 17 16 34 34 H 1.07999 * 120.03672 * 180.27873 * 19 18 17 35 35 H 1.07998 * 120.04049 * 179.97438 * 23 20 19 36 36 H 1.08003 * 119.96307 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3227 -1.1197 -4.0079 9 1 1.3450 -2.1617 -4.4122 10 1 2.4874 -0.1404 -5.1119 11 1 3.6310 -1.7567 -3.7118 12 7 2.0197 -0.6924 1.1995 13 6 2.0825 0.2228 2.3469 14 6 2.5885 -0.5212 3.5558 15 8 2.8697 -1.6979 3.4699 16 7 2.7287 0.1208 4.7325 17 6 3.0913 -0.5906 5.8767 18 6 2.6562 -1.9010 6.0460 19 6 3.0168 -2.6081 7.1712 20 6 3.8110 -2.0036 8.1496 21 6 4.1823 -2.7335 9.3243 22 7 4.4738 -3.3128 10.2570 23 6 4.2415 -0.6848 7.9790 24 6 3.8826 0.0139 6.8481 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 0.7096 1.1616 -3.4844 29 1 2.9174 -1.1204 1.0289 30 1 2.7588 1.0464 2.1182 31 1 1.0871 0.6164 2.5525 32 1 2.5775 1.0776 4.7838 33 1 2.0389 -2.3660 5.2915 34 1 2.6823 -3.6269 7.2997 35 1 4.8549 -0.2145 8.7332 36 1 4.2152 1.0328 6.7152 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602870057.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:12 Heat of formation + Delta-G solvation = 24.533455 kcal Electronic energy + Delta-G solvation = -19287.361229 eV Core-core repulsion = 16157.722446 eV Total energy + Delta-G solvation = -3129.638783 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.70466 -38.90489 -36.72617 -35.74123 -34.79208 -32.61471 -31.41018 -30.59289 -29.03038 -26.01437 -25.06507 -23.44501 -23.21208 -20.55175 -19.86122 -19.19142 -18.06103 -17.24685 -16.27812 -15.81982 -15.26017 -14.86945 -14.62468 -14.45759 -14.24490 -13.90748 -13.77673 -13.45854 -13.36507 -12.99668 -12.70343 -12.54355 -12.43001 -11.92608 -11.53454 -11.35188 -10.98874 -10.79280 -10.53289 -10.43989 -10.22818 -10.13941 -9.72943 -9.31924 -8.92284 -8.54177 -8.38399 -7.43920 -6.09649 -4.15892 0.46533 1.06008 2.43378 2.45097 2.83556 2.90809 3.27558 3.34026 3.37752 3.63999 3.68178 4.35810 4.49221 4.56425 4.79943 4.94224 5.16167 5.20765 5.25466 5.27131 5.63821 5.68211 5.72325 5.74267 5.98856 6.04994 6.16177 6.64435 6.73832 7.01357 7.07447 7.19383 7.26329 7.37216 7.71714 7.78157 8.10907 8.17659 8.24662 8.53656 8.93251 9.50504 10.96801 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.044320 B = 0.002853 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.618670 B = 9812.639559 C =10074.369678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.213 3.787 3 H 0.003 0.997 4 C -0.519 4.519 5 H 0.062 0.938 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.673 5.673 13 C 0.044 3.956 14 C 0.513 3.487 15 O -0.497 6.497 16 N -0.683 5.683 17 C 0.192 3.808 18 C -0.127 4.127 19 C -0.045 4.045 20 C -0.061 4.061 21 C 0.262 3.738 22 N -0.430 5.430 23 C -0.047 4.047 24 C -0.155 4.155 25 H 0.003 0.997 26 H 0.082 0.918 27 H 0.034 0.966 28 H 0.262 0.738 29 H 0.342 0.658 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.414 0.586 33 H 0.148 0.852 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.257 2.729 17.469 17.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.106 3.894 3 H 0.021 0.979 4 C -0.558 4.558 5 H 0.080 0.920 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.306 5.306 13 C -0.089 4.089 14 C 0.301 3.699 15 O -0.368 6.368 16 N -0.329 5.329 17 C 0.095 3.905 18 C -0.148 4.148 19 C -0.067 4.067 20 C -0.066 4.066 21 C -0.053 4.053 22 N -0.105 5.105 23 C -0.068 4.068 24 C -0.176 4.176 25 H 0.023 0.977 26 H 0.101 0.899 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.161 0.839 30 H 0.072 0.928 31 H 0.117 0.883 32 H 0.250 0.750 33 H 0.166 0.834 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.168 0.857 18.744 19.029 hybrid contribution 0.841 0.905 -1.431 1.890 sum 4.009 1.762 17.313 17.858 Atomic orbital electron populations 1.21747 0.97671 0.99635 0.99411 1.19169 0.92760 0.92313 0.85189 0.97911 1.21233 1.31632 1.12663 0.90240 0.92002 1.24909 0.94982 0.94971 0.99097 1.69884 1.36613 1.22816 1.23605 0.86486 0.79310 0.79316 0.82243 1.20542 1.21270 1.19869 1.60556 1.33499 1.31592 1.04967 1.21844 1.01539 0.95050 0.90423 1.21433 0.76396 0.88170 0.83868 1.90714 1.46039 1.15919 1.84125 1.43803 1.69411 1.12516 1.07168 1.18047 0.93148 0.92609 0.86674 1.21195 1.01456 0.93969 0.98142 1.21059 0.94367 0.99727 0.91498 1.15984 1.05473 0.93873 0.91223 1.25724 0.93355 0.93360 0.92880 1.81252 1.09297 1.08773 1.11211 1.20896 0.97129 0.91891 0.96932 1.20823 1.00178 1.01572 0.95033 0.97747 0.89892 0.94722 0.92849 0.83933 0.92832 0.88272 0.74988 0.83439 0.84700 0.84772 0.84579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 9.19 37.16 0.34 -2.63 16 2 C 0.21 5.09 2.60 -68.86 -0.18 4.91 16 3 H 0.00 0.08 7.80 -51.93 -0.40 -0.32 16 4 C -0.52 -13.83 8.59 -34.44 -0.30 -14.13 16 5 H 0.06 1.65 7.62 -52.49 -0.40 1.25 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.53 11.32 55.43 0.63 -23.90 16 8 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.67 -13.72 5.93 -109.21 -0.65 -14.36 16 13 C 0.04 0.67 5.97 -4.97 -0.03 0.64 16 14 C 0.51 7.08 7.59 -10.99 -0.08 7.00 16 15 O -0.50 -8.62 13.89 5.56 0.08 -8.55 16 16 N -0.68 -6.53 5.32 -9.85 -0.05 -6.58 16 17 C 0.19 1.85 6.27 -83.71 -0.53 1.33 16 18 C -0.13 -1.35 8.63 -39.46 -0.34 -1.69 16 19 C -0.05 -0.41 9.75 -39.21 -0.38 -0.79 16 20 C -0.06 -0.53 5.74 -106.83 -0.61 -1.14 16 21 C 0.26 2.70 15.33 -22.47 -0.34 2.35 16 22 N -0.43 -5.40 18.54 41.84 0.78 -4.62 16 23 C -0.05 -0.34 9.75 -39.21 -0.38 -0.72 16 24 C -0.16 -1.12 9.94 -39.46 -0.39 -1.51 16 25 H 0.00 0.07 7.45 -51.93 -0.39 -0.31 16 26 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 27 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.34 7.19 7.92 -39.29 -0.31 6.87 16 30 H 0.05 0.74 8.05 -51.93 -0.42 0.33 16 31 H 0.10 1.39 7.44 -51.93 -0.39 1.01 16 32 H 0.41 2.54 8.82 -40.82 -0.36 2.18 16 33 H 0.15 1.84 6.42 -52.49 -0.34 1.50 16 34 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 36 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 LS Contribution 318.72 15.07 4.80 4.80 Total: -1.00 -31.13 318.72 -6.90 -38.04 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -4.15 Total: 4.17 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -3.32 Total: -4.81 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: 0.70 Total: -49.47 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.08 Total: -8.55 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.13 -6.90 -38.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870057.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.572 kcal (2) G-P(sol) polarization free energy of solvation -31.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds