Wall clock time and date at job start Mon Mar 30 2020 01:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.47309 * 2 1 4 4 C 1.50698 * 109.47348 * 239.99787 * 2 1 3 5 5 H 1.07999 * 119.99948 * 239.99941 * 4 2 1 6 6 C 1.37875 * 119.99871 * 59.99744 * 4 2 1 7 7 N 1.31517 * 120.00203 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99826 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46774 * 90.00231 * 8 6 4 10 10 H 1.48497 * 109.46827 * 210.00026 * 8 6 4 11 11 H 1.48498 * 109.47227 * 330.00219 * 8 6 4 12 12 N 1.46898 * 109.47049 * 119.99582 * 2 1 3 13 13 C 1.46906 * 111.00113 * 274.99962 * 12 2 1 14 14 C 1.50701 * 109.47227 * 180.02562 * 13 12 2 15 15 O 1.21283 * 120.00004 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00366 * 180.02562 * 14 13 12 17 17 C 1.39539 * 120.00393 * 174.72923 * 16 14 13 18 18 C 1.39108 * 119.91860 * 326.31136 * 17 16 14 19 19 C 1.37697 * 120.08036 * 179.72507 * 18 17 16 20 20 C 1.39771 * 119.91809 * 0.57524 * 19 18 17 21 21 C 1.43196 * 120.07970 * 179.68374 * 20 19 18 22 22 N 9.74313 * 137.65529 * 159.86894 * 12 1 2 23 23 C 1.39775 * 119.84240 * 359.70254 * 20 19 18 24 24 C 1.37695 * 119.91636 * 359.97438 * 23 20 19 25 25 H 1.08993 * 109.47160 * 300.00047 * 1 2 3 26 26 H 1.08999 * 109.46760 * 60.00292 * 1 2 3 27 27 H 1.09000 * 109.46484 * 180.02562 * 1 2 3 28 28 H 0.96993 * 119.99828 * 179.97438 * 7 6 4 29 29 H 1.00903 * 111.00179 * 151.05062 * 12 2 1 30 30 H 1.09000 * 109.47159 * 300.00364 * 13 12 2 31 31 H 1.08999 * 109.46707 * 60.00413 * 13 12 2 32 32 H 0.97002 * 119.99353 * 354.72324 * 16 14 13 33 33 H 1.08001 * 119.95580 * 0.02562 * 18 17 16 34 34 H 1.07999 * 120.03672 * 180.27873 * 19 18 17 35 35 H 1.07998 * 120.04049 * 179.97438 * 23 20 19 36 36 H 1.08003 * 119.96307 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3227 -1.1197 -4.0079 9 1 1.3450 -2.1617 -4.4122 10 1 2.4874 -0.1404 -5.1119 11 1 3.6310 -1.7567 -3.7118 12 7 2.0197 -0.6924 1.1995 13 6 2.0825 0.2228 2.3469 14 6 2.5885 -0.5212 3.5558 15 8 2.8697 -1.6979 3.4699 16 7 2.7287 0.1208 4.7325 17 6 3.0913 -0.5906 5.8767 18 6 2.6562 -1.9010 6.0460 19 6 3.0168 -2.6081 7.1712 20 6 3.8110 -2.0036 8.1496 21 6 4.1823 -2.7335 9.3243 22 7 4.4738 -3.3128 10.2570 23 6 4.2415 -0.6848 7.9790 24 6 3.8826 0.0139 6.8481 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 0.7096 1.1616 -3.4844 29 1 2.9174 -1.1204 1.0289 30 1 2.7588 1.0464 2.1182 31 1 1.0871 0.6164 2.5525 32 1 2.5775 1.0776 4.7838 33 1 2.0389 -2.3660 5.2915 34 1 2.6823 -3.6269 7.2997 35 1 4.8549 -0.2145 8.7332 36 1 4.2152 1.0328 6.7152 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602870057.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:11 Heat of formation + Delta-G solvation = 3.567493 kcal Electronic energy + Delta-G solvation = -19288.270381 eV Core-core repulsion = 16157.722446 eV Total energy + Delta-G solvation = -3130.547935 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.60700 -39.80168 -37.72828 -37.29805 -35.73261 -34.46277 -32.07686 -31.66887 -30.51093 -27.58849 -26.81649 -24.36662 -23.93928 -21.83658 -21.39375 -19.92379 -19.12823 -18.48132 -17.81921 -16.92054 -16.68133 -16.11831 -15.71617 -15.57418 -15.14730 -15.06846 -14.74941 -14.64341 -14.43778 -14.29191 -13.89440 -13.56102 -13.37419 -13.19432 -13.09653 -12.82635 -12.65090 -12.28457 -12.21085 -12.17416 -11.99390 -11.38768 -10.96124 -10.79089 -10.54859 -9.98999 -9.18601 -9.04653 -8.12860 -6.25433 -0.27841 0.41270 1.43394 1.45263 1.46259 1.54572 1.62957 1.92301 2.06047 2.43644 2.91004 2.92339 3.16286 3.65565 3.75665 3.95735 3.97228 4.28936 4.45766 4.49210 4.51380 4.58122 4.87373 4.98520 5.08141 5.11131 5.22241 5.28915 5.36860 5.40728 5.48208 5.67598 5.87292 5.89869 6.25024 6.36694 6.45653 6.46341 6.75882 6.95926 7.15173 7.44577 8.92433 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.044320 B = 0.002853 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.618670 B = 9812.639559 C =10074.369678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.218 3.782 3 H -0.014 1.014 4 C -0.540 4.540 5 H 0.053 0.947 6 C 0.017 3.983 7 N -0.913 5.913 8 Si 0.958 3.042 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.271 1.271 12 N -0.682 5.682 13 C 0.043 3.957 14 C 0.520 3.480 15 O -0.539 6.539 16 N -0.662 5.662 17 C 0.176 3.824 18 C -0.146 4.146 19 C -0.046 4.046 20 C -0.064 4.064 21 C 0.284 3.716 22 N -0.472 5.472 23 C -0.036 4.036 24 C -0.139 4.139 25 H 0.032 0.968 26 H 0.059 0.941 27 H 0.022 0.978 28 H 0.263 0.737 29 H 0.336 0.664 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.432 0.568 33 H 0.123 0.877 34 H 0.141 0.859 35 H 0.164 0.836 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.067 3.999 18.569 19.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.110 3.890 3 H 0.003 0.997 4 C -0.578 4.578 5 H 0.071 0.929 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.784 3.216 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.196 1.196 12 N -0.314 5.314 13 C -0.089 4.089 14 C 0.309 3.691 15 O -0.413 6.413 16 N -0.309 5.309 17 C 0.080 3.920 18 C -0.167 4.167 19 C -0.067 4.067 20 C -0.069 4.069 21 C -0.030 4.030 22 N -0.148 5.148 23 C -0.057 4.057 24 C -0.159 4.159 25 H 0.051 0.949 26 H 0.077 0.923 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.153 0.847 30 H 0.091 0.909 31 H 0.131 0.869 32 H 0.272 0.728 33 H 0.141 0.859 34 H 0.159 0.841 35 H 0.181 0.819 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.975 2.166 19.891 20.400 hybrid contribution 0.590 0.549 -1.683 1.866 sum 4.565 2.715 18.208 18.966 Atomic orbital electron populations 1.21581 0.97485 0.98809 0.99599 1.18954 0.92843 0.91216 0.85970 0.99650 1.21565 1.31748 1.12671 0.91817 0.92856 1.25630 0.95202 0.95673 1.01721 1.69985 1.37283 1.23754 1.24211 0.85563 0.78757 0.78289 0.79037 1.20402 1.20652 1.19554 1.60396 1.33258 1.32698 1.05091 1.21902 1.03045 0.94712 0.89263 1.21063 0.76045 0.87398 0.84606 1.90713 1.48195 1.17572 1.84863 1.43436 1.68218 1.13295 1.05937 1.18237 0.94200 0.92464 0.87113 1.21074 1.02373 0.94936 0.98288 1.21086 0.94359 1.00097 0.91183 1.16049 1.05757 0.94626 0.90453 1.25861 0.92169 0.92434 0.92489 1.81278 1.10881 1.10023 1.12642 1.21243 0.96245 0.90902 0.97291 1.21114 0.98394 1.02782 0.93651 0.94940 0.92251 0.95901 0.92749 0.84664 0.90945 0.86887 0.72755 0.85897 0.84068 0.81860 0.81205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 9.19 71.98 0.66 -4.81 16 2 C 0.22 10.48 2.60 44.17 0.11 10.60 16 3 H -0.01 -0.71 7.80 -2.38 -0.02 -0.73 16 4 C -0.54 -29.06 8.59 25.60 0.22 -28.84 16 5 H 0.05 2.89 7.62 -2.91 -0.02 2.87 16 6 C 0.02 0.94 5.30 84.65 0.45 1.39 16 7 N -0.91 -50.57 11.32 21.45 0.24 -50.32 16 8 Si 0.96 42.83 29.54 68.60 2.03 44.86 16 9 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 12 N -0.68 -27.79 5.93 -499.44 -2.96 -30.75 16 13 C 0.04 1.25 5.97 85.56 0.51 1.76 16 14 C 0.52 13.81 7.59 87.66 0.67 14.48 16 15 O -0.54 -18.81 13.89 -3.04 -0.04 -18.85 16 16 N -0.66 -11.15 5.32 -303.46 -1.61 -12.77 16 17 C 0.18 3.01 6.27 38.33 0.24 3.25 16 18 C -0.15 -3.03 8.63 22.35 0.19 -2.84 16 19 C -0.05 -0.80 9.75 22.51 0.22 -0.58 16 20 C -0.06 -0.99 5.74 -21.29 -0.12 -1.11 16 21 C 0.28 5.45 15.33 88.33 1.35 6.80 16 22 N -0.47 -11.48 18.54 19.00 0.35 -11.12 16 23 C -0.04 -0.38 9.75 22.51 0.22 -0.16 16 24 C -0.14 -1.46 9.94 22.35 0.22 -1.24 16 25 H 0.03 1.29 7.45 -2.39 -0.02 1.27 16 26 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 27 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 29 H 0.34 14.29 7.92 -89.69 -0.71 13.58 16 30 H 0.07 1.87 8.05 -2.39 -0.02 1.85 16 31 H 0.11 2.95 7.44 -2.39 -0.02 2.93 16 32 H 0.43 3.87 8.82 -92.71 -0.82 3.05 16 33 H 0.12 3.19 6.42 -2.91 -0.02 3.17 16 34 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 35 H 0.16 0.84 8.06 -2.91 -0.02 0.81 16 36 H 0.17 0.68 8.06 -2.91 -0.02 0.65 16 Total: -1.00 -68.32 318.72 2.56 -65.76 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -0.40 Total: 14.49 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 4.95 Total: -1.29 kcal Atomic # 7 Polarization: -100.99 SS G_CDS: -3.98 Total: -104.97 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.04 Total: -18.85 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -68.32 2.56 -65.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870057.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.330 kcal (2) G-P(sol) polarization free energy of solvation -68.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds