Wall clock time and date at job start Mon Mar 30 2020 01:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47308 * 2 1 4 4 C 1.52991 * 109.46925 * 120.00729 * 2 1 3 5 5 C 1.50706 * 109.47042 * 294.99753 * 4 2 1 6 6 O 1.21289 * 119.99865 * 359.72530 * 5 4 2 7 7 N 1.34773 * 119.99922 * 180.02562 * 5 4 2 8 8 C 1.37103 * 120.00061 * 180.02562 * 7 5 4 9 9 H 1.08001 * 119.99219 * 322.47049 * 8 7 5 10 10 C 1.38945 * 120.00122 * 142.47558 * 8 7 5 11 11 N 1.31411 * 119.99754 * 157.59083 * 10 8 7 12 12 Si 1.86796 * 120.00147 * 337.58974 * 10 8 7 13 13 H 1.48500 * 109.47029 * 95.70603 * 12 10 8 14 14 H 1.48502 * 109.47094 * 215.70704 * 12 10 8 15 15 H 1.48502 * 109.47199 * 335.70467 * 12 10 8 16 16 C 1.46507 * 120.00151 * 359.97438 * 7 5 4 17 17 C 1.47196 * 109.47080 * 83.79948 * 16 7 5 18 18 N 5.28054 * 135.36418 * 107.87912 * 2 1 3 19 19 C 1.50700 * 109.47217 * 240.00584 * 2 1 3 20 20 C 1.38659 * 120.78665 * 299.72273 * 19 2 1 21 21 C 1.38201 * 119.15909 * 179.75425 * 20 19 2 22 22 N 1.31876 * 120.76611 * 0.52991 * 21 20 19 23 23 C 1.31874 * 121.72437 * 359.74438 * 22 21 20 24 24 C 1.38201 * 120.76193 * 359.97014 * 23 22 21 25 25 H 1.08989 * 109.47063 * 299.99894 * 1 2 3 26 26 H 1.09003 * 109.46949 * 59.99371 * 1 2 3 27 27 H 1.08992 * 109.47211 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47281 * 175.00096 * 4 2 1 29 29 H 1.08994 * 109.47580 * 54.99815 * 4 2 1 30 30 H 0.97005 * 120.00292 * 179.97438 * 11 10 8 31 31 H 1.08996 * 109.46796 * 203.79805 * 16 7 5 32 32 H 1.09001 * 109.47100 * 323.79634 * 16 7 5 33 33 H 1.08000 * 120.41940 * 359.97438 * 20 19 2 34 34 H 1.07997 * 119.62071 * 180.24532 * 21 20 19 35 35 H 1.07995 * 119.61641 * 180.02562 * 23 22 21 36 36 H 1.08000 * 120.41589 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6413 0.0569 2.4765 6 8 1.0156 1.0897 2.3631 7 7 1.9852 -0.3917 3.7000 8 6 1.6221 0.3160 4.8167 9 1 1.6338 1.3958 4.7990 10 6 1.2393 -0.3560 5.9710 11 7 1.3160 0.2450 7.1372 12 14 0.6155 -2.1136 5.8653 13 1 1.7343 -3.0528 6.1326 14 1 -0.4557 -2.3201 6.8729 15 1 0.0720 -2.3650 4.5064 16 6 2.7462 -1.6362 3.8368 17 6 4.1808 -1.3556 3.6636 18 7 5.2876 -1.1390 3.5309 19 6 2.0324 -0.7103 -1.2305 20 6 1.7122 -2.0391 -1.4634 21 6 2.1868 -2.6560 -2.6054 22 7 2.9438 -1.9987 -3.4622 23 6 3.2729 -0.7362 -3.2703 24 6 2.8304 -0.0523 -2.1538 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1262 -0.7996 1.2055 29 1 1.6054 -1.7199 1.2949 30 1 1.0484 -0.2240 7.9431 31 1 2.5757 -2.0593 4.8267 32 1 2.4206 -2.3466 3.0769 33 1 1.0967 -2.5841 -0.7630 34 1 1.9386 -3.6896 -2.7962 35 1 3.8945 -0.2307 -3.9944 36 1 3.1036 0.9815 -2.0020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611471399.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:41 Heat of formation + Delta-G solvation = 36.584622 kcal Electronic energy + Delta-G solvation = -20509.604346 eV Core-core repulsion = 17380.488140 eV Total energy + Delta-G solvation = -3129.116205 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.39464 -39.24435 -36.56450 -35.59448 -34.62210 -32.30812 -31.31989 -30.84279 -28.06504 -27.77158 -24.97018 -23.96706 -23.40108 -20.73523 -19.06026 -18.49204 -17.18737 -16.77232 -16.25402 -15.92620 -15.54070 -15.52970 -14.73981 -14.21660 -14.04951 -13.74271 -13.59224 -13.37047 -13.25946 -12.75081 -12.65844 -12.55703 -12.21233 -11.90380 -11.84375 -11.54447 -11.28634 -11.10133 -10.90861 -10.69707 -10.53137 -10.09244 -9.56011 -9.50783 -9.32992 -9.21475 -8.71357 -8.12316 -6.56616 -4.18058 1.07538 1.21184 2.83981 2.95664 3.04188 3.08280 3.18626 3.45693 3.75393 3.96099 4.17588 4.38442 4.39518 4.64180 4.69121 4.90147 5.04061 5.08991 5.14035 5.20978 5.29163 5.39084 5.54499 5.61911 5.67344 5.74849 5.79036 5.89365 5.97052 6.10438 6.20310 6.49091 6.62254 6.68152 7.30054 7.89623 7.89838 8.06284 8.25256 8.73972 9.07572 9.46886 10.54946 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024130 B = 0.005073 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.121940 B = 5518.135341 C = 5755.997449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.036 4.036 3 H 0.090 0.910 4 C -0.136 4.136 5 C 0.477 3.523 6 O -0.542 6.542 7 N -0.463 5.463 8 C -0.325 4.325 9 H 0.110 0.890 10 C 0.063 3.937 11 N -0.853 5.853 12 Si 0.860 3.140 13 H -0.270 1.270 14 H -0.279 1.279 15 H -0.255 1.255 16 C 0.178 3.822 17 C 0.205 3.795 18 N -0.440 5.440 19 C -0.025 4.025 20 C -0.169 4.169 21 C 0.096 3.904 22 N -0.495 5.495 23 C 0.097 3.903 24 C -0.171 4.171 25 H 0.090 0.910 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.277 0.723 31 H 0.115 0.885 32 H 0.108 0.892 33 H 0.135 0.865 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.884 -7.360 -13.960 15.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.055 4.055 3 H 0.109 0.891 4 C -0.177 4.177 5 C 0.266 3.734 6 O -0.422 6.422 7 N -0.186 5.186 8 C -0.452 4.452 9 H 0.127 0.873 10 C -0.144 4.144 11 N -0.487 5.487 12 Si 0.685 3.315 13 H -0.197 1.197 14 H -0.205 1.205 15 H -0.179 1.179 16 C 0.051 3.949 17 C -0.114 4.114 18 N -0.119 5.119 19 C -0.033 4.033 20 C -0.188 4.188 21 C -0.061 4.061 22 N -0.204 5.204 23 C -0.060 4.060 24 C -0.190 4.190 25 H 0.109 0.891 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.132 0.868 32 H 0.126 0.874 33 H 0.153 0.847 34 H 0.170 0.830 35 H 0.170 0.830 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.684 -6.908 -14.731 16.284 hybrid contribution -0.928 -0.657 1.126 1.600 sum -0.244 -7.564 -13.604 15.568 Atomic orbital electron populations 1.21951 0.93106 1.01749 1.03610 1.19922 0.97190 0.99337 0.89078 0.89150 1.21797 1.02050 1.00227 0.93615 1.20217 0.81866 0.87510 0.83801 1.90554 1.41510 1.24599 1.85525 1.43653 1.46621 1.21774 1.06547 1.19053 1.45649 0.93233 0.87250 0.87282 1.25377 0.95694 0.98587 0.94771 1.69753 1.42253 1.38862 0.97873 0.87202 0.79849 0.84604 0.79796 1.19698 1.20540 1.17924 1.19576 0.79604 0.90775 1.04928 1.30024 0.95466 0.93337 0.92616 1.81052 1.13208 1.08024 1.09583 1.20497 0.93434 0.93861 0.95479 1.22054 1.02095 0.95368 0.99330 1.22722 0.93286 0.99835 0.90228 1.67655 1.12694 1.09253 1.30819 1.22716 0.96997 0.90430 0.95871 1.22132 0.99464 1.01734 0.95705 0.89138 0.93189 0.93191 0.90113 0.89400 0.91239 0.86766 0.87411 0.84726 0.82976 0.82993 0.84796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.76 37.16 0.33 -1.68 16 2 C -0.04 -0.50 2.24 -91.77 -0.21 -0.71 16 3 H 0.09 1.35 7.75 -51.93 -0.40 0.94 16 4 C -0.14 -2.02 3.53 -27.88 -0.10 -2.12 16 5 C 0.48 9.60 7.27 -10.98 -0.08 9.52 16 6 O -0.54 -12.68 13.84 5.55 0.08 -12.60 16 7 N -0.46 -9.89 2.16 -117.93 -0.25 -10.14 16 8 C -0.33 -8.37 9.36 -14.93 -0.14 -8.51 16 9 H 0.11 3.23 7.91 -52.49 -0.42 2.81 16 10 C 0.06 1.58 5.26 -17.47 -0.09 1.49 16 11 N -0.85 -23.00 13.96 55.50 0.77 -22.23 16 12 Si 0.86 17.58 25.04 -169.99 -4.26 13.32 16 13 H -0.27 -5.03 6.69 56.52 0.38 -4.65 16 14 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 15 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 16 C 0.18 3.10 4.27 -6.83 -0.03 3.07 16 17 C 0.20 3.77 15.00 -20.78 -0.31 3.46 16 18 N -0.44 -8.75 18.53 42.14 0.78 -7.97 16 19 C -0.02 -0.30 4.80 -104.32 -0.50 -0.80 16 20 C -0.17 -1.83 8.89 -39.44 -0.35 -2.19 16 21 C 0.10 1.04 11.18 -17.55 -0.20 0.84 16 22 N -0.49 -6.13 10.36 -13.25 -0.14 -6.26 16 23 C 0.10 1.08 11.18 -17.55 -0.20 0.88 16 24 C -0.17 -1.94 9.76 -39.44 -0.39 -2.33 16 25 H 0.09 1.51 5.96 -51.93 -0.31 1.20 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.60 7.50 -51.93 -0.39 0.21 16 28 H 0.08 1.17 7.48 -51.93 -0.39 0.78 16 29 H 0.09 1.07 6.93 -51.93 -0.36 0.71 16 30 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.12 2.05 3.61 -51.93 -0.19 1.86 16 32 H 0.11 1.37 6.70 -51.93 -0.35 1.02 16 33 H 0.13 1.22 7.35 -52.49 -0.39 0.84 16 34 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.13 1.32 8.01 -52.49 -0.42 0.90 16 LS Contribution 308.06 15.07 4.64 4.64 Total: -1.00 -30.56 308.06 -4.67 -35.22 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -4.03 Total: 5.08 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -2.26 Total: 0.93 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 1.16 Total: -46.60 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.08 Total: -12.60 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -4.26 Total: 13.32 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.56 -4.67 -35.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611471399.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.809 kcal (2) G-P(sol) polarization free energy of solvation -30.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds