Wall clock time and date at job start Mon Mar 30 2020 01:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47308 * 2 1 4 4 C 1.52991 * 109.46925 * 120.00729 * 2 1 3 5 5 C 1.50706 * 109.47042 * 294.99753 * 4 2 1 6 6 O 1.21289 * 119.99865 * 359.72530 * 5 4 2 7 7 N 1.34773 * 119.99922 * 180.02562 * 5 4 2 8 8 C 1.37103 * 120.00061 * 180.02562 * 7 5 4 9 9 H 1.08001 * 119.99219 * 322.47049 * 8 7 5 10 10 C 1.38945 * 120.00122 * 142.47558 * 8 7 5 11 11 N 1.31411 * 119.99754 * 157.59083 * 10 8 7 12 12 Si 1.86796 * 120.00147 * 337.58974 * 10 8 7 13 13 H 1.48500 * 109.47029 * 95.70603 * 12 10 8 14 14 H 1.48502 * 109.47094 * 215.70704 * 12 10 8 15 15 H 1.48502 * 109.47199 * 335.70467 * 12 10 8 16 16 C 1.46507 * 120.00151 * 359.97438 * 7 5 4 17 17 C 1.47196 * 109.47080 * 83.79948 * 16 7 5 18 18 N 5.28054 * 135.36418 * 107.87912 * 2 1 3 19 19 C 1.50700 * 109.47217 * 240.00584 * 2 1 3 20 20 C 1.38659 * 120.78665 * 299.72273 * 19 2 1 21 21 C 1.38201 * 119.15909 * 179.75425 * 20 19 2 22 22 N 1.31876 * 120.76611 * 0.52991 * 21 20 19 23 23 C 1.31874 * 121.72437 * 359.74438 * 22 21 20 24 24 C 1.38201 * 120.76193 * 359.97014 * 23 22 21 25 25 H 1.08989 * 109.47063 * 299.99894 * 1 2 3 26 26 H 1.09003 * 109.46949 * 59.99371 * 1 2 3 27 27 H 1.08992 * 109.47211 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47281 * 175.00096 * 4 2 1 29 29 H 1.08994 * 109.47580 * 54.99815 * 4 2 1 30 30 H 0.97005 * 120.00292 * 179.97438 * 11 10 8 31 31 H 1.08996 * 109.46796 * 203.79805 * 16 7 5 32 32 H 1.09001 * 109.47100 * 323.79634 * 16 7 5 33 33 H 1.08000 * 120.41940 * 359.97438 * 20 19 2 34 34 H 1.07997 * 119.62071 * 180.24532 * 21 20 19 35 35 H 1.07995 * 119.61641 * 180.02562 * 23 22 21 36 36 H 1.08000 * 120.41589 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6413 0.0569 2.4765 6 8 1.0156 1.0897 2.3631 7 7 1.9852 -0.3917 3.7000 8 6 1.6221 0.3160 4.8167 9 1 1.6338 1.3958 4.7990 10 6 1.2393 -0.3560 5.9710 11 7 1.3160 0.2450 7.1372 12 14 0.6155 -2.1136 5.8653 13 1 1.7343 -3.0528 6.1326 14 1 -0.4557 -2.3201 6.8729 15 1 0.0720 -2.3650 4.5064 16 6 2.7462 -1.6362 3.8368 17 6 4.1808 -1.3556 3.6636 18 7 5.2876 -1.1390 3.5309 19 6 2.0324 -0.7103 -1.2305 20 6 1.7122 -2.0391 -1.4634 21 6 2.1868 -2.6560 -2.6054 22 7 2.9438 -1.9987 -3.4622 23 6 3.2729 -0.7362 -3.2703 24 6 2.8304 -0.0523 -2.1538 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1262 -0.7996 1.2055 29 1 1.6054 -1.7199 1.2949 30 1 1.0484 -0.2240 7.9431 31 1 2.5757 -2.0593 4.8267 32 1 2.4206 -2.3466 3.0769 33 1 1.0967 -2.5841 -0.7630 34 1 1.9386 -3.6896 -2.7962 35 1 3.8945 -0.2307 -3.9944 36 1 3.1036 0.9815 -2.0020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611471399.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:41 Heat of formation + Delta-G solvation = 16.845251 kcal Electronic energy + Delta-G solvation = -20510.460309 eV Core-core repulsion = 17380.488140 eV Total energy + Delta-G solvation = -3129.972169 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.38987 -40.65603 -38.04917 -36.88239 -36.14608 -34.16676 -32.15656 -31.80689 -29.50817 -29.15974 -26.52174 -25.03743 -24.24971 -21.88764 -20.55264 -20.13054 -18.52439 -18.16001 -17.38860 -17.03910 -17.01005 -16.36671 -16.10606 -15.68108 -15.19326 -15.03405 -14.87538 -14.57144 -14.42858 -14.20729 -14.06232 -13.93483 -13.61309 -13.32233 -13.05620 -12.73617 -12.66133 -12.36845 -12.21660 -12.10353 -11.76119 -11.67214 -11.08434 -10.50694 -10.38100 -10.27994 -10.00250 -9.93288 -8.47054 -6.16037 0.28473 0.34840 1.27563 1.41654 1.46371 1.55374 1.72380 1.90735 2.24900 2.70867 2.84240 2.95572 3.19031 3.55904 3.68150 3.74158 3.98860 4.03899 4.15418 4.20612 4.27052 4.30542 4.32588 4.52219 4.70131 4.78319 4.83089 4.97983 4.99413 5.13918 5.20675 5.48342 5.50644 5.58251 5.85953 6.07247 6.42609 6.50851 6.92308 7.09860 7.21239 7.77520 8.69777 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024130 B = 0.005073 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.121940 B = 5518.135341 C = 5755.997449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.031 4.031 3 H 0.067 0.933 4 C -0.125 4.125 5 C 0.474 3.526 6 O -0.585 6.585 7 N -0.475 5.475 8 C -0.341 4.341 9 H 0.042 0.958 10 C 0.011 3.989 11 N -0.910 5.910 12 Si 0.930 3.070 13 H -0.230 1.230 14 H -0.290 1.290 15 H -0.225 1.225 16 C 0.177 3.823 17 C 0.220 3.780 18 N -0.470 5.470 19 C -0.034 4.034 20 C -0.165 4.165 21 C 0.092 3.908 22 N -0.517 5.517 23 C 0.090 3.910 24 C -0.180 4.180 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.130 0.870 30 H 0.281 0.719 31 H 0.115 0.885 32 H 0.171 0.829 33 H 0.160 0.840 34 H 0.180 0.820 35 H 0.172 0.828 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.159 -11.408 -15.868 19.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.050 4.050 3 H 0.085 0.915 4 C -0.165 4.165 5 C 0.265 3.735 6 O -0.467 6.467 7 N -0.198 5.198 8 C -0.469 4.469 9 H 0.060 0.940 10 C -0.192 4.192 11 N -0.547 5.547 12 Si 0.750 3.250 13 H -0.154 1.154 14 H -0.217 1.217 15 H -0.147 1.147 16 C 0.051 3.949 17 C -0.099 4.099 18 N -0.149 5.149 19 C -0.042 4.042 20 C -0.185 4.185 21 C -0.065 4.065 22 N -0.227 5.227 23 C -0.066 4.066 24 C -0.200 4.200 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.148 0.852 30 H 0.091 0.909 31 H 0.133 0.867 32 H 0.188 0.812 33 H 0.177 0.823 34 H 0.197 0.803 35 H 0.189 0.811 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.443 -10.959 -16.667 19.952 hybrid contribution -0.826 0.767 1.682 2.025 sum -0.383 -10.192 -14.985 18.127 Atomic orbital electron populations 1.21873 0.93098 1.02850 1.02168 1.19773 0.97163 0.98368 0.89664 0.91495 1.21818 1.02789 1.01215 0.90717 1.21226 0.80421 0.87008 0.84893 1.90545 1.43125 1.26710 1.86335 1.43680 1.47570 1.22966 1.05615 1.18565 1.47673 0.91101 0.89565 0.93983 1.26290 0.94840 1.04604 0.93431 1.69898 1.43847 1.41894 0.99034 0.86105 0.79887 0.78005 0.81006 1.15413 1.21720 1.14708 1.19962 0.78220 0.89588 1.07161 1.30216 0.95571 0.92469 0.91663 1.81075 1.14290 1.08729 1.10804 1.20350 0.94346 0.94642 0.94899 1.22284 1.01805 0.94638 0.99730 1.23208 0.92479 1.00974 0.89800 1.67701 1.13486 1.09781 1.31704 1.23042 0.97081 0.90345 0.96147 1.22285 0.99568 1.02224 0.95924 0.92684 0.92509 0.90736 0.89200 0.85187 0.90943 0.86733 0.81236 0.82260 0.80292 0.81087 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 8.76 71.98 0.63 -3.01 16 2 C -0.03 -0.78 2.24 -11.54 -0.03 -0.81 16 3 H 0.07 2.01 7.75 -2.39 -0.02 1.99 16 4 C -0.13 -3.32 3.53 29.85 0.11 -3.21 16 5 C 0.47 18.73 7.27 87.66 0.64 19.37 16 6 O -0.59 -28.41 13.84 -3.06 -0.04 -28.45 16 7 N -0.48 -19.86 2.16 -645.41 -1.39 -21.25 16 8 C -0.34 -18.28 9.36 84.04 0.79 -17.49 16 9 H 0.04 2.73 7.91 -2.91 -0.02 2.71 16 10 C 0.01 0.56 5.26 84.93 0.45 1.01 16 11 N -0.91 -51.12 13.96 21.66 0.30 -50.82 16 12 Si 0.93 34.31 25.04 68.60 1.72 36.03 16 13 H -0.23 -7.04 6.69 99.48 0.67 -6.37 16 14 H -0.29 -11.25 7.11 99.48 0.71 -10.54 16 15 H -0.22 -7.18 7.11 99.48 0.71 -6.47 16 16 C 0.18 5.46 4.27 84.57 0.36 5.82 16 17 C 0.22 7.55 15.00 89.45 1.34 8.89 16 18 N -0.47 -17.96 18.53 20.00 0.37 -17.59 16 19 C -0.03 -0.73 4.80 -19.67 -0.09 -0.82 16 20 C -0.17 -2.86 8.89 22.36 0.20 -2.66 16 21 C 0.09 1.63 11.18 84.68 0.95 2.58 16 22 N -0.52 -11.33 10.36 -195.85 -2.03 -13.36 16 23 C 0.09 1.81 11.18 84.68 0.95 2.75 16 24 C -0.18 -3.77 9.76 22.36 0.22 -3.55 16 25 H 0.05 1.82 5.96 -2.39 -0.01 1.81 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 1.50 7.50 -2.39 -0.02 1.48 16 28 H 0.09 2.29 7.48 -2.39 -0.02 2.27 16 29 H 0.13 2.36 6.93 -2.39 -0.02 2.35 16 30 H 0.28 14.42 8.31 -92.70 -0.77 13.65 16 31 H 0.12 3.61 3.61 -2.39 -0.01 3.60 16 32 H 0.17 3.14 6.70 -2.39 -0.02 3.12 16 33 H 0.16 1.91 7.35 -2.91 -0.02 1.89 16 34 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 36 H 0.14 2.64 8.01 -2.91 -0.02 2.61 16 Total: -1.00 -73.08 308.06 6.49 -66.59 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 1.07 Total: 20.00 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 6.50 Total: 8.85 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -2.75 Total: -103.02 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.04 Total: -28.45 kcal Atomic # 14 Polarization: 34.31 SS G_CDS: 1.72 Total: 36.03 kcal Total: -73.08 6.49 -66.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611471399.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.436 kcal (2) G-P(sol) polarization free energy of solvation -73.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds