Wall clock time and date at job start Mon Mar 30 2020 02:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00038 * 2 1 4 4 H 1.48510 * 109.47102 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47478 * 300.00127 * 3 2 1 6 6 H 1.48498 * 109.47292 * 60.00663 * 3 2 1 7 7 C 1.37878 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99627 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99874 * 359.97438 * 7 2 1 10 10 C 1.53126 * 109.51995 * 180.02562 * 9 7 2 11 11 C 1.53034 * 109.27766 * 177.55963 * 10 9 7 12 12 N 1.46851 * 109.52532 * 300.82158 * 11 10 9 13 13 C 1.38401 * 111.00201 * 185.83953 * 12 11 10 14 14 C 1.36487 * 120.23453 * 359.97438 * 13 12 11 15 15 N 1.32997 * 120.99818 * 179.72128 * 14 13 12 16 16 C 1.31346 * 121.38126 * 0.26246 * 15 14 13 17 17 C 1.40548 * 119.83884 * 359.97438 * 16 15 14 18 18 N 1.32654 * 133.77009 * 179.97438 * 17 16 15 19 19 C 1.32550 * 109.70672 * 180.02562 * 18 17 16 20 20 N 1.31347 * 109.66755 * 359.97438 * 19 18 17 21 21 N 1.36329 * 120.23761 * 180.23287 * 13 12 11 22 22 C 1.46846 * 111.19586 * 61.74164 * 12 11 10 23 23 C 1.53042 * 109.52487 * 298.25775 * 22 12 11 24 24 H 0.97007 * 119.99815 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.57697 * 59.84629 * 9 7 2 26 26 H 1.08998 * 109.50550 * 57.61799 * 10 9 7 27 27 H 1.09001 * 109.50168 * 297.50314 * 10 9 7 28 28 H 1.08997 * 109.46441 * 180.80346 * 11 10 9 29 29 H 1.09009 * 109.46332 * 60.83575 * 11 10 9 30 30 H 1.08002 * 119.50381 * 0.02562 * 14 13 12 31 31 H 1.08001 * 120.07701 * 180.02562 * 16 15 14 32 32 H 1.07997 * 125.16247 * 180.02562 * 19 18 17 33 33 H 1.08997 * 109.46264 * 58.27446 * 22 12 11 34 34 H 1.09004 * 109.45858 * 178.24564 * 22 12 11 35 35 H 1.09001 * 109.50117 * 299.24170 * 23 22 12 36 36 H 1.08998 * 109.50352 * 179.11998 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2508 -2.4991 -0.0005 10 6 2.2448 -3.6639 -0.0005 11 6 1.4750 -4.9851 0.0610 12 7 0.6541 -5.0186 1.2782 13 6 0.0452 -6.2519 1.4320 14 6 0.2493 -7.2388 0.5115 15 7 -0.3237 -8.4312 0.6473 16 6 -1.1084 -8.7011 1.6654 17 6 -1.3547 -7.7173 2.6385 18 7 -2.0793 -7.6863 3.7492 19 6 -1.9738 -6.4940 4.3186 20 7 -1.1852 -5.7287 3.5991 21 7 -0.7669 -6.4880 2.5013 22 6 -0.3396 -3.9374 1.2784 23 6 0.3761 -2.5849 1.2532 24 1 -0.4850 0.8401 0.0004 25 1 0.6211 -2.5572 -0.8883 26 1 2.8996 -3.5836 0.8671 27 1 2.8420 -3.6327 -0.9119 28 1 2.1802 -5.8161 0.0755 29 1 0.8306 -5.0711 -0.8141 30 1 0.8898 -7.0501 -0.3374 31 1 -1.5626 -9.6768 1.7551 32 1 -2.4614 -6.1972 5.2354 33 1 -0.9753 -4.0283 0.3977 34 1 -0.9522 -4.0075 2.1772 35 1 1.0015 -2.4876 2.1407 36 1 -0.3619 -1.7829 1.2376 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611931156.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:52 Heat of formation + Delta-G solvation = 145.986808 kcal Electronic energy + Delta-G solvation = -20986.482539 eV Core-core repulsion = 17894.403119 eV Total energy + Delta-G solvation = -3092.079419 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.00850 -39.88046 -38.08433 -34.95731 -33.28712 -31.62459 -31.38445 -30.56525 -28.96336 -26.23970 -24.50902 -24.34010 -22.58126 -22.19318 -21.35170 -19.14113 -18.36280 -17.80861 -16.94734 -16.48083 -16.33210 -15.72787 -14.79737 -14.67643 -14.40795 -14.09988 -13.49721 -13.11802 -12.95207 -12.76005 -12.71078 -12.13565 -11.78961 -11.75694 -11.18853 -10.98494 -10.66475 -10.54024 -10.49518 -10.28949 -10.10731 -10.02434 -9.76086 -9.35111 -9.17116 -8.91031 -8.44975 -7.81259 -6.11283 -4.17172 0.45659 0.79581 1.73271 2.59625 3.23198 3.30066 3.32096 3.35255 3.51578 3.76186 4.08899 4.34378 4.36541 4.62588 4.83832 5.16864 5.19893 5.28317 5.38869 5.60823 5.70524 5.81745 5.92136 6.01159 6.05027 6.19718 6.31076 6.36684 6.51524 6.68118 6.73713 7.00466 7.11387 7.23785 7.52658 7.59981 7.79073 7.80874 7.93877 8.29477 8.86271 9.48701 10.95433 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.032712 B = 0.004687 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.737887 B = 5972.190984 C = 6589.518772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.044 3.956 10 C -0.108 4.108 11 C 0.052 3.948 12 N -0.470 5.470 13 C 0.333 3.667 14 C -0.056 4.056 15 N -0.393 5.393 16 C 0.098 3.902 17 C 0.253 3.747 18 N -0.535 5.535 19 C 0.232 3.768 20 N -0.318 5.318 21 N -0.282 5.282 22 C 0.052 3.948 23 C -0.104 4.104 24 H 0.261 0.739 25 H 0.026 0.974 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.191 0.809 31 H 0.189 0.811 32 H 0.228 0.772 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.049 0.951 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.120 -13.517 2.686 13.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.551 4.551 8 H 0.076 0.924 9 C 0.026 3.974 10 C -0.146 4.146 11 C -0.073 4.073 12 N -0.183 5.183 13 C 0.118 3.882 14 C -0.207 4.207 15 N -0.104 5.104 16 C -0.084 4.084 17 C -0.004 4.004 18 N -0.266 5.266 19 C -0.068 4.068 20 N -0.148 5.148 21 N -0.064 5.064 22 C -0.071 4.071 23 C -0.143 4.143 24 H 0.071 0.929 25 H 0.044 0.956 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.207 0.793 31 H 0.206 0.794 32 H 0.245 0.755 33 H 0.060 0.940 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.757 -13.156 2.825 13.570 hybrid contribution -0.059 1.453 0.200 1.468 sum -1.816 -11.703 3.025 12.223 Atomic orbital electron populations 1.69855 1.05951 1.26544 1.50700 1.24971 0.94859 0.99217 0.94890 0.86532 0.80157 0.83694 0.77616 1.19747 1.21016 1.21002 1.21164 0.92994 0.90305 1.50634 0.92429 1.18762 0.92671 0.92054 0.93911 1.21770 0.98857 0.92440 1.01548 1.22609 0.95821 1.01654 0.87261 1.58289 1.22012 0.99980 1.38029 1.20082 0.87252 0.95957 0.84883 1.22496 1.08879 0.88968 1.00337 1.67817 1.03904 1.19269 1.19428 1.22460 0.99078 0.98542 0.88334 1.23076 0.93802 0.87328 0.96209 1.70796 1.25879 1.22413 1.07537 1.26369 0.93946 0.86979 0.99529 1.78654 1.21652 1.17374 0.97103 1.47841 1.30795 1.11456 1.16290 1.22718 0.91921 0.91148 1.01291 1.21774 1.00594 0.91907 0.99986 0.92930 0.95584 0.91908 0.91556 0.90298 0.92565 0.79280 0.79415 0.75547 0.93973 0.89821 0.93228 0.87895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.40 11.37 55.43 0.63 -23.77 16 2 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 3 Si 0.89 20.58 29.54 -169.99 -5.02 15.55 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -13.28 8.56 -34.44 -0.29 -13.57 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.04 1.02 2.16 -91.65 -0.20 0.82 16 10 C -0.11 -2.00 5.32 -26.65 -0.14 -2.14 16 11 C 0.05 0.79 4.13 -3.83 -0.02 0.78 16 12 N -0.47 -8.03 4.72 -173.10 -0.82 -8.85 16 13 C 0.33 5.25 6.47 -153.10 -0.99 4.26 16 14 C -0.06 -0.75 9.91 -17.68 -0.18 -0.92 16 15 N -0.39 -5.09 10.41 -12.94 -0.13 -5.22 16 16 C 0.10 1.19 11.32 -16.89 -0.19 1.00 16 17 C 0.25 3.71 7.92 -156.24 -1.24 2.47 16 18 N -0.53 -7.72 11.24 -13.96 -0.16 -7.87 16 19 C 0.23 3.14 12.98 -91.88 -1.19 1.94 16 20 N -0.32 -5.25 10.91 29.27 0.32 -4.93 16 21 N -0.28 -4.61 3.76 -11.60 -0.04 -4.66 16 22 C 0.05 1.00 5.32 -3.83 -0.02 0.98 16 23 C -0.10 -2.34 5.12 -26.65 -0.14 -2.47 16 24 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.08 0.98 6.96 -51.93 -0.36 0.62 16 29 H 0.06 0.80 7.71 -51.92 -0.40 0.40 16 30 H 0.19 2.11 5.67 -52.49 -0.30 1.82 16 31 H 0.19 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.23 1.98 8.06 -52.49 -0.42 1.56 16 33 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.64 6.02 -51.93 -0.31 1.32 16 35 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.10 2.59 6.17 -51.93 -0.32 2.27 16 LS Contribution 293.20 15.07 4.42 4.42 Total: -1.00 -29.47 293.20 -9.69 -39.16 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -4.19 Total: 1.48 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -4.69 Total: -5.31 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.20 Total: -55.31 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.47 -9.69 -39.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611931156.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.147 kcal (2) G-P(sol) polarization free energy of solvation -29.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds