Wall clock time and date at job start Mon Mar 30 2020 01:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47540 * 2 1 4 4 C 1.50700 * 109.47189 * 120.00370 * 2 1 3 5 5 H 1.07990 * 120.00417 * 119.99586 * 4 2 1 6 6 C 1.37884 * 119.99604 * 299.99419 * 4 2 1 7 7 N 1.31509 * 119.99885 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 119.99859 * 0.02562 * 6 4 2 9 9 H 1.48490 * 109.47200 * 89.99660 * 8 6 4 10 10 H 1.48503 * 109.46739 * 209.99886 * 8 6 4 11 11 H 1.48502 * 109.46992 * 329.99304 * 8 6 4 12 12 N 1.46502 * 109.46958 * 240.00098 * 2 1 3 13 13 C 1.46499 * 119.99785 * 300.00053 * 12 2 1 14 14 C 1.34775 * 120.00566 * 120.00438 * 12 2 1 15 15 O 1.21661 * 119.99337 * 357.98717 * 14 12 2 16 16 C 1.47046 * 120.00488 * 177.99340 * 14 12 2 17 17 C 1.37600 * 119.93184 * 26.07137 * 16 14 12 18 18 C 1.39937 * 120.01526 * 179.97438 * 17 16 14 19 19 C 1.36210 * 119.92235 * 0.02562 * 18 17 16 20 20 C 1.40928 * 119.79627 * 359.97438 * 19 18 17 21 21 N 1.32570 * 132.18796 * 179.97438 * 20 19 18 22 22 C 1.33229 * 109.14240 * 180.02562 * 21 20 19 23 23 C 1.35455 * 108.57645 * 0.02562 * 22 21 20 24 24 N 1.36252 * 107.17790 * 359.76637 * 23 22 21 25 25 H 1.09002 * 109.46896 * 300.00183 * 1 2 3 26 26 H 1.08999 * 109.47540 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47052 * 59.99885 * 1 2 3 28 28 H 0.97004 * 119.99960 * 179.97438 * 7 6 4 29 29 H 1.08993 * 109.47433 * 88.48719 * 13 12 2 30 30 H 1.09007 * 109.47239 * 208.48480 * 13 12 2 31 31 H 1.09003 * 109.47321 * 328.48658 * 13 12 2 32 32 H 1.08004 * 119.99334 * 0.02562 * 17 16 14 33 33 H 1.08004 * 120.03860 * 179.97438 * 18 17 16 34 34 H 1.07995 * 120.10471 * 180.02562 * 19 18 17 35 35 H 1.08001 * 125.71594 * 180.02562 * 22 21 20 36 36 H 1.07999 * 126.40977 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6249 1.2791 2.6541 9 1 -0.8026 0.8729 2.6997 10 1 0.9761 1.9952 3.9068 11 1 0.8473 2.1766 1.4920 12 7 2.0183 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4280 14 6 2.7932 -0.0357 -2.0834 15 8 3.0570 1.1391 -1.9097 16 6 3.3197 -0.7412 -3.2613 17 6 2.6491 -1.8321 -3.7648 18 6 3.1483 -2.5044 -4.8860 19 6 4.2986 -2.0778 -5.4776 20 6 4.9808 -0.9598 -4.9574 21 7 6.0957 -0.3455 -5.3277 22 6 6.3264 0.6755 -4.5036 23 6 5.3356 0.7177 -3.5809 24 7 4.4807 -0.3055 -3.8614 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 1.9032 -0.5279 4.4375 29 1 0.7236 -2.1447 -1.9760 30 1 2.4504 -2.5750 -2.0096 31 1 1.5557 -2.6035 -0.4710 32 1 1.7369 -2.1692 -3.2950 33 1 2.6225 -3.3611 -5.2812 34 1 4.6862 -2.5942 -6.3433 35 1 7.1632 1.3558 -4.5615 36 1 5.2389 1.4315 -2.7763 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770418626.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:08 Heat of formation + Delta-G solvation = 95.435431 kcal Electronic energy + Delta-G solvation = -21020.777039 eV Core-core repulsion = 17894.212796 eV Total energy + Delta-G solvation = -3126.564243 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.78328 -39.70905 -37.13558 -35.92989 -33.51391 -33.09805 -31.25951 -29.69198 -28.61545 -26.96571 -25.32528 -24.52567 -22.73367 -22.33905 -21.08721 -19.01614 -17.78306 -17.49469 -16.64546 -16.33917 -15.95615 -15.70896 -15.49578 -14.78521 -14.39645 -13.96131 -13.62608 -13.38395 -13.06142 -12.92732 -12.61535 -12.36889 -12.26614 -12.05012 -11.76014 -11.29452 -11.07954 -10.94550 -10.86287 -10.30463 -10.17953 -9.78955 -9.59099 -9.40977 -8.77308 -8.75834 -8.09826 -7.78748 -6.27302 -4.30030 0.36059 1.28380 2.39034 2.71450 3.13974 3.22823 3.28629 3.29433 3.45409 3.59735 4.21127 4.23349 4.41144 4.59439 4.73718 4.95080 5.05954 5.30199 5.43561 5.50985 5.57541 5.59483 5.74889 5.92494 6.01023 6.06117 6.09196 6.16833 6.28676 6.41143 6.64706 6.66727 6.86273 7.03160 7.07146 7.42937 7.82681 7.87837 8.24737 8.45671 8.72309 9.31830 10.84953 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028529 B = 0.005283 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.236044 B = 5298.788395 C = 5723.065600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.231 3.769 3 H 0.065 0.935 4 C -0.535 4.535 5 H 0.080 0.920 6 C 0.079 3.921 7 N -0.890 5.890 8 Si 0.883 3.117 9 H -0.275 1.275 10 H -0.292 1.292 11 H -0.263 1.263 12 N -0.564 5.564 13 C 0.053 3.947 14 C 0.549 3.451 15 O -0.539 6.539 16 C 0.050 3.950 17 C -0.122 4.122 18 C -0.116 4.116 19 C -0.059 4.059 20 C 0.201 3.799 21 N -0.490 5.490 22 C 0.019 3.981 23 C -0.064 4.064 24 N -0.335 5.335 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.035 0.965 28 H 0.268 0.732 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.180 0.820 33 H 0.148 0.852 34 H 0.152 0.848 35 H 0.182 0.818 36 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.631 -3.731 -15.008 15.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.130 3.870 3 H 0.083 0.917 4 C -0.573 4.573 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.527 5.527 8 Si 0.712 3.288 9 H -0.202 1.202 10 H -0.219 1.219 11 H -0.188 1.188 12 N -0.294 5.294 13 C -0.089 4.089 14 C 0.334 3.666 15 O -0.418 6.418 16 C -0.057 4.057 17 C -0.143 4.143 18 C -0.140 4.140 19 C -0.079 4.079 20 C -0.041 4.041 21 N -0.210 5.210 22 C -0.133 4.133 23 C -0.197 4.197 24 N -0.007 5.007 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.196 0.804 33 H 0.166 0.834 34 H 0.169 0.831 35 H 0.199 0.801 36 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -0.011 -3.285 -15.280 15.629 hybrid contribution -1.046 0.971 1.040 1.766 sum -1.057 -2.314 -14.240 14.466 Atomic orbital electron populations 1.22461 0.98518 1.01385 0.99586 1.19423 0.90330 0.95224 0.82043 0.91682 1.21083 1.33308 1.14569 0.88300 0.90154 1.24844 0.95543 0.96567 0.95532 1.69860 1.44738 1.40010 0.98071 0.86925 0.80470 0.83707 0.77689 1.20212 1.21938 1.18803 1.47732 1.47727 1.11812 1.22092 1.22507 0.99257 0.82966 1.04195 1.17526 0.80375 0.86627 0.82048 1.90792 1.59718 1.15442 1.75807 1.20381 0.89118 0.98209 0.97967 1.22377 1.02045 0.93124 0.96777 1.20991 0.96264 1.01009 0.95701 1.20384 0.94305 0.92976 1.00262 1.20995 0.94615 0.98556 0.89907 1.70607 1.13121 1.09459 1.27791 1.22540 0.99715 0.97907 0.93092 1.23068 0.93474 0.96608 1.06592 1.42570 1.15753 1.21321 1.21021 0.92828 0.92307 0.94639 0.92215 0.92315 0.90342 0.88862 0.80363 0.83419 0.83085 0.80076 0.79350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 8.67 37.16 0.32 -2.91 16 2 C 0.23 5.26 2.23 -69.08 -0.15 5.10 16 3 H 0.07 1.66 5.96 -51.93 -0.31 1.35 16 4 C -0.53 -14.06 8.58 -34.44 -0.30 -14.36 16 5 H 0.08 2.28 7.55 -52.49 -0.40 1.88 16 6 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 7 N -0.89 -25.88 13.96 55.43 0.77 -25.11 16 8 Si 0.88 20.94 24.37 -169.99 -4.14 16.80 16 9 H -0.28 -6.22 6.87 56.52 0.39 -5.83 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.26 -6.17 6.53 56.52 0.37 -5.80 16 12 N -0.56 -10.85 2.75 -176.67 -0.49 -11.34 16 13 C 0.05 0.76 7.72 59.85 0.46 1.23 16 14 C 0.55 10.77 7.44 -12.69 -0.09 10.67 16 15 O -0.54 -12.28 14.53 5.22 0.08 -12.21 16 16 C 0.05 0.81 6.48 -81.86 -0.53 0.28 16 17 C -0.12 -1.46 7.50 -39.18 -0.29 -1.75 16 18 C -0.12 -1.12 10.04 -39.68 -0.40 -1.52 16 19 C -0.06 -0.68 10.09 -39.29 -0.40 -1.07 16 20 C 0.20 3.12 7.80 -156.02 -1.22 1.90 16 21 N -0.49 -7.94 11.31 -12.76 -0.14 -8.08 16 22 C 0.02 0.29 11.83 -17.94 -0.21 0.07 16 23 C -0.06 -1.06 10.84 -16.58 -0.18 -1.24 16 24 N -0.33 -5.66 2.97 -58.75 -0.17 -5.83 16 25 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 26 H 0.06 1.07 7.67 -51.93 -0.40 0.67 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.06 0.65 7.24 -51.93 -0.38 0.27 16 30 H 0.08 0.96 4.87 -51.92 -0.25 0.70 16 31 H 0.09 1.48 7.00 -51.93 -0.36 1.12 16 32 H 0.18 1.72 4.13 -52.48 -0.22 1.50 16 33 H 0.15 0.83 8.06 -52.48 -0.42 0.41 16 34 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.18 2.01 8.06 -52.49 -0.42 1.59 16 36 H 0.19 3.16 7.04 -52.49 -0.37 2.79 16 LS Contribution 290.43 15.07 4.38 4.38 Total: -1.00 -33.30 290.43 -6.53 -39.83 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -3.72 Total: 3.09 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -3.08 Total: -1.53 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: -0.03 Total: -50.36 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.08 Total: -12.21 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.14 Total: 16.80 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.30 -6.53 -39.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770418626.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.264 kcal (2) G-P(sol) polarization free energy of solvation -33.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds