Wall clock time and date at job start Mon Mar 30 2020 01:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47540 * 2 1 4 4 C 1.50700 * 109.47189 * 120.00370 * 2 1 3 5 5 H 1.07990 * 120.00417 * 119.99586 * 4 2 1 6 6 C 1.37884 * 119.99604 * 299.99419 * 4 2 1 7 7 N 1.31509 * 119.99885 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 119.99859 * 0.02562 * 6 4 2 9 9 H 1.48490 * 109.47200 * 89.99660 * 8 6 4 10 10 H 1.48503 * 109.46739 * 209.99886 * 8 6 4 11 11 H 1.48502 * 109.46992 * 329.99304 * 8 6 4 12 12 N 1.46502 * 109.46958 * 240.00098 * 2 1 3 13 13 C 1.46499 * 119.99785 * 300.00053 * 12 2 1 14 14 C 1.34775 * 120.00566 * 120.00438 * 12 2 1 15 15 O 1.21661 * 119.99337 * 357.98717 * 14 12 2 16 16 C 1.47046 * 120.00488 * 177.99340 * 14 12 2 17 17 C 1.37600 * 119.93184 * 26.07137 * 16 14 12 18 18 C 1.39937 * 120.01526 * 179.97438 * 17 16 14 19 19 C 1.36210 * 119.92235 * 0.02562 * 18 17 16 20 20 C 1.40928 * 119.79627 * 359.97438 * 19 18 17 21 21 N 1.32570 * 132.18796 * 179.97438 * 20 19 18 22 22 C 1.33229 * 109.14240 * 180.02562 * 21 20 19 23 23 C 1.35455 * 108.57645 * 0.02562 * 22 21 20 24 24 N 1.36252 * 107.17790 * 359.76637 * 23 22 21 25 25 H 1.09002 * 109.46896 * 300.00183 * 1 2 3 26 26 H 1.08999 * 109.47540 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47052 * 59.99885 * 1 2 3 28 28 H 0.97004 * 119.99960 * 179.97438 * 7 6 4 29 29 H 1.08993 * 109.47433 * 88.48719 * 13 12 2 30 30 H 1.09007 * 109.47239 * 208.48480 * 13 12 2 31 31 H 1.09003 * 109.47321 * 328.48658 * 13 12 2 32 32 H 1.08004 * 119.99334 * 0.02562 * 17 16 14 33 33 H 1.08004 * 120.03860 * 179.97438 * 18 17 16 34 34 H 1.07995 * 120.10471 * 180.02562 * 19 18 17 35 35 H 1.08001 * 125.71594 * 180.02562 * 22 21 20 36 36 H 1.07999 * 126.40977 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6249 1.2791 2.6541 9 1 -0.8026 0.8729 2.6997 10 1 0.9761 1.9952 3.9068 11 1 0.8473 2.1766 1.4920 12 7 2.0183 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4280 14 6 2.7932 -0.0357 -2.0834 15 8 3.0570 1.1391 -1.9097 16 6 3.3197 -0.7412 -3.2613 17 6 2.6491 -1.8321 -3.7648 18 6 3.1483 -2.5044 -4.8860 19 6 4.2986 -2.0778 -5.4776 20 6 4.9808 -0.9598 -4.9574 21 7 6.0957 -0.3455 -5.3277 22 6 6.3264 0.6755 -4.5036 23 6 5.3356 0.7177 -3.5809 24 7 4.4807 -0.3055 -3.8614 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 1.9032 -0.5279 4.4375 29 1 0.7236 -2.1447 -1.9760 30 1 2.4504 -2.5750 -2.0096 31 1 1.5557 -2.6035 -0.4710 32 1 1.7369 -2.1692 -3.2950 33 1 2.6225 -3.3611 -5.2812 34 1 4.6862 -2.5942 -6.3433 35 1 7.1632 1.3558 -4.5615 36 1 5.2389 1.4315 -2.7763 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770418626.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:08 Heat of formation + Delta-G solvation = 72.552823 kcal Electronic energy + Delta-G solvation = -21021.769303 eV Core-core repulsion = 17894.212796 eV Total energy + Delta-G solvation = -3127.556507 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.90269 -41.14074 -38.24662 -37.52315 -34.97059 -34.55510 -32.92120 -30.94657 -29.75941 -28.23867 -27.22829 -25.76075 -23.94974 -23.46119 -22.54274 -20.51122 -19.19561 -18.75231 -18.29690 -17.76380 -17.17356 -17.01357 -16.74789 -16.16935 -15.97061 -15.16137 -15.09696 -14.79179 -14.59865 -14.18709 -14.01982 -13.81326 -13.70441 -13.24939 -13.19341 -12.78751 -12.70641 -12.24641 -12.08884 -11.95504 -11.61965 -11.46680 -11.36139 -10.96981 -10.83172 -9.87273 -9.64387 -8.91374 -8.39460 -6.45293 -0.69616 0.26834 1.17503 1.24086 1.34393 1.41881 1.52564 1.96690 2.10621 2.23916 2.50022 2.95884 3.12917 3.30405 3.56734 3.83461 4.03227 4.20188 4.37344 4.39563 4.43492 4.49034 4.51901 4.53734 4.66891 4.89232 4.92164 4.98016 5.01606 5.09062 5.20984 5.40741 5.44860 5.55494 5.58209 5.89452 6.11257 6.43800 6.57594 6.73281 6.94785 7.21576 8.76212 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028529 B = 0.005283 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.236044 B = 5298.788395 C = 5723.065600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.233 3.767 3 H 0.031 0.969 4 C -0.530 4.530 5 H 0.047 0.953 6 C 0.027 3.973 7 N -0.936 5.936 8 Si 0.939 3.061 9 H -0.249 1.249 10 H -0.297 1.297 11 H -0.264 1.264 12 N -0.571 5.571 13 C 0.046 3.954 14 C 0.542 3.458 15 O -0.588 6.588 16 C 0.001 3.999 17 C -0.087 4.087 18 C -0.095 4.095 19 C -0.058 4.058 20 C 0.188 3.812 21 N -0.514 5.514 22 C 0.027 3.973 23 C -0.104 4.104 24 N -0.345 5.345 25 H 0.043 0.957 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.269 0.731 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.208 0.792 33 H 0.207 0.793 34 H 0.186 0.814 35 H 0.210 0.790 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.708 -5.803 -17.773 18.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.130 3.870 3 H 0.049 0.951 4 C -0.568 4.568 5 H 0.066 0.934 6 C -0.173 4.173 7 N -0.575 5.575 8 Si 0.766 3.234 9 H -0.174 1.174 10 H -0.225 1.225 11 H -0.189 1.189 12 N -0.300 5.300 13 C -0.094 4.094 14 C 0.330 3.670 15 O -0.470 6.470 16 C -0.105 4.105 17 C -0.108 4.108 18 C -0.118 4.118 19 C -0.078 4.078 20 C -0.054 4.054 21 N -0.235 5.235 22 C -0.125 4.125 23 C -0.238 4.238 24 N -0.017 5.017 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.224 0.776 33 H 0.224 0.776 34 H 0.203 0.797 35 H 0.226 0.774 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -2.114 -5.398 -18.065 18.972 hybrid contribution -0.345 1.465 1.803 2.349 sum -2.459 -3.933 -16.262 16.910 Atomic orbital electron populations 1.22312 0.95647 1.02965 1.00204 1.19072 0.92418 0.93297 0.82172 0.95145 1.21290 1.32144 1.13362 0.90025 0.93445 1.25608 0.97050 0.99355 0.95268 1.69988 1.46824 1.42022 0.98673 0.86007 0.80167 0.80110 0.77069 1.17371 1.22493 1.18894 1.47722 1.47801 1.13563 1.20893 1.22868 1.02228 0.80016 1.04310 1.18066 0.79622 0.86326 0.82989 1.90751 1.61225 1.17736 1.77322 1.20192 0.90875 1.00835 0.98609 1.22926 1.01485 0.90230 0.96133 1.21626 0.95163 1.01363 0.93654 1.21012 0.94390 0.91370 1.01009 1.21820 0.94682 0.99403 0.89499 1.70616 1.14104 1.10263 1.28517 1.22964 0.99750 0.97810 0.92002 1.23014 0.95194 0.97888 1.07655 1.42666 1.15997 1.21459 1.21530 0.93866 0.90229 0.92248 0.92129 0.87641 0.88040 0.90792 0.77561 0.77643 0.79709 0.77363 0.81238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.83 8.67 71.98 0.62 -5.21 16 2 C 0.23 10.69 2.23 44.24 0.10 10.79 16 3 H 0.03 1.61 5.96 -2.39 -0.01 1.60 16 4 C -0.53 -28.66 8.58 25.60 0.22 -28.44 16 5 H 0.05 2.81 7.55 -2.92 -0.02 2.78 16 6 C 0.03 1.49 5.45 84.66 0.46 1.95 16 7 N -0.94 -56.07 13.96 21.45 0.30 -55.78 16 8 Si 0.94 43.67 24.37 68.60 1.67 45.34 16 9 H -0.25 -10.43 6.87 99.48 0.68 -9.75 16 10 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 11 H -0.26 -12.21 6.53 99.48 0.65 -11.56 16 12 N -0.57 -21.69 2.75 -831.09 -2.29 -23.98 16 13 C 0.05 1.20 7.72 127.77 0.99 2.18 16 14 C 0.54 21.63 7.44 86.55 0.64 22.27 16 15 O -0.59 -28.43 14.53 -4.22 -0.06 -28.49 16 16 C 0.00 0.03 6.48 40.37 0.26 0.29 16 17 C -0.09 -1.69 7.50 22.53 0.17 -1.52 16 18 C -0.10 -1.25 10.04 22.21 0.22 -1.03 16 19 C -0.06 -1.07 10.09 22.46 0.23 -0.84 16 20 C 0.19 5.53 7.80 134.10 1.05 6.58 16 21 N -0.51 -16.36 11.31 -194.28 -2.20 -18.56 16 22 C 0.03 0.81 11.83 83.84 0.99 1.81 16 23 C -0.10 -3.66 10.84 83.36 0.90 -2.76 16 24 N -0.34 -11.69 2.97 -339.78 -1.01 -12.70 16 25 H 0.04 1.73 3.27 -2.39 -0.01 1.72 16 26 H 0.08 2.66 7.67 -2.39 -0.02 2.64 16 27 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 28 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 29 H 0.11 1.76 7.24 -2.39 -0.02 1.74 16 30 H 0.10 2.11 4.87 -2.38 -0.01 2.10 16 31 H 0.07 2.24 7.00 -2.39 -0.02 2.23 16 32 H 0.21 2.74 4.13 -2.91 -0.01 2.73 16 33 H 0.21 0.47 8.06 -2.91 -0.02 0.45 16 34 H 0.19 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.21 4.69 8.06 -2.91 -0.02 4.67 16 36 H 0.17 6.40 7.04 -2.91 -0.02 6.38 16 Total: -1.00 -79.47 290.43 4.31 -75.16 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 1.04 Total: 12.94 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 6.86 Total: 6.06 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -5.19 Total: -111.01 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.06 Total: -28.49 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.67 Total: 45.34 kcal Total: -79.47 4.31 -75.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770418626.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.713 kcal (2) G-P(sol) polarization free energy of solvation -79.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds