Wall clock time and date at job start Mon Mar 30 2020 01:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47366 * 2 1 4 4 C 1.50700 * 109.47211 * 239.99513 * 2 1 3 5 5 H 1.08000 * 120.00131 * 239.99469 * 4 2 1 6 6 C 1.37876 * 119.99636 * 60.00216 * 4 2 1 7 7 N 1.31515 * 120.00446 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99712 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47437 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47266 * 120.00248 * 8 6 4 11 11 H 1.48503 * 109.47321 * 239.99747 * 8 6 4 12 12 N 1.46505 * 109.46977 * 119.99544 * 2 1 3 13 13 C 1.46497 * 119.99687 * 60.00586 * 12 2 1 14 14 C 1.34780 * 119.99806 * 239.99905 * 12 2 1 15 15 O 1.21649 * 120.00350 * 5.55137 * 14 12 2 16 16 C 1.47053 * 119.99741 * 185.54780 * 14 12 2 17 17 C 1.37602 * 119.93201 * 22.07473 * 16 14 12 18 18 C 1.39939 * 120.01397 * 179.80825 * 17 16 14 19 19 C 1.36206 * 119.91830 * 0.45142 * 18 17 16 20 20 C 1.40918 * 119.80281 * 359.78734 * 19 18 17 21 21 N 1.32573 * 132.19170 * 179.97438 * 20 19 18 22 22 C 1.33238 * 109.14509 * 180.02562 * 21 20 19 23 23 C 1.35453 * 108.57229 * 0.02562 * 22 21 20 24 24 N 1.36250 * 107.17769 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47358 * 60.00086 * 1 2 3 26 26 H 1.09005 * 109.47240 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47757 * 300.00074 * 1 2 3 28 28 H 0.96997 * 120.00559 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.47686 * 83.70670 * 13 12 2 30 30 H 1.09000 * 109.47385 * 323.70070 * 13 12 2 31 31 H 1.09009 * 109.46597 * 203.70799 * 13 12 2 32 32 H 1.07998 * 119.98836 * 0.02562 * 17 16 14 33 33 H 1.08001 * 120.03695 * 180.23208 * 18 17 16 34 34 H 1.08003 * 120.10326 * 179.76639 * 19 18 17 35 35 H 1.07995 * 125.71502 * 180.02562 * 22 21 20 36 36 H 1.08005 * 126.40958 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9427 0.8295 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 3.1484 -2.2858 -3.6036 10 1 1.1678 -1.5868 -4.8164 11 1 3.1472 -0.1860 -4.8160 12 7 2.0182 -0.6905 1.1963 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0041 1.1545 1.9446 16 6 3.3835 -0.7592 3.2192 17 6 3.5435 -2.1244 3.1550 18 6 4.1088 -2.8143 4.2333 19 6 4.4917 -2.1341 5.3495 20 6 4.3206 -0.7367 5.4113 21 7 4.5985 0.1535 6.3534 22 6 4.2441 1.3653 5.9278 23 6 3.7253 1.2503 4.6819 24 7 3.7694 -0.0699 4.3479 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3635 0.5138 0.8900 28 1 0.7087 1.1611 -3.4844 29 1 2.3516 -2.7368 0.8790 30 1 0.6456 -2.2724 1.0845 31 1 1.7326 -2.3137 2.4934 32 1 3.2360 -2.6630 2.2709 33 1 4.2380 -3.8854 4.1818 34 1 4.9248 -2.6641 6.1850 35 1 4.3524 2.2852 6.4831 36 1 3.3481 2.0547 4.0678 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770418629.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:11 Heat of formation + Delta-G solvation = 86.159817 kcal Electronic energy + Delta-G solvation = -20951.540653 eV Core-core repulsion = 17824.574189 eV Total energy + Delta-G solvation = -3126.966463 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.74266 -39.55562 -37.05857 -35.74256 -33.45845 -33.15146 -30.81411 -29.28514 -28.38144 -26.85976 -25.37636 -24.43431 -22.63638 -22.26790 -20.99118 -19.00580 -17.65477 -17.33980 -16.42475 -16.11398 -15.85374 -15.74795 -15.31030 -14.53938 -14.48375 -13.89607 -13.58895 -13.31534 -12.99988 -12.69884 -12.44922 -12.22301 -11.85195 -11.66765 -11.19736 -11.06074 -11.00192 -10.87660 -10.80904 -10.37955 -10.29719 -10.14028 -9.41660 -9.31728 -8.73130 -8.56570 -7.95031 -7.72274 -6.20192 -4.29567 0.40754 1.32521 2.48806 2.75785 3.18338 3.25951 3.28025 3.30553 3.62626 3.65287 4.24593 4.28546 4.52328 4.65794 4.79449 5.00598 5.11639 5.33150 5.47041 5.56483 5.61144 5.76615 5.80643 5.97319 6.02570 6.08583 6.43088 6.61185 6.65949 6.69603 6.87080 7.03561 7.17520 7.30034 7.55711 7.84115 7.90468 7.99201 8.22259 8.53901 8.76244 9.37482 10.85205 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029598 B = 0.004961 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.777506 B = 5642.262317 C = 6057.997255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.259 3.741 3 H 0.066 0.934 4 C -0.530 4.530 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.571 5.571 13 C 0.061 3.939 14 C 0.546 3.454 15 O -0.539 6.539 16 C 0.049 3.951 17 C -0.121 4.121 18 C -0.115 4.115 19 C -0.061 4.061 20 C 0.201 3.799 21 N -0.491 5.491 22 C 0.018 3.982 23 C -0.064 4.064 24 N -0.335 5.335 25 H 0.097 0.903 26 H 0.032 0.968 27 H 0.013 0.987 28 H 0.265 0.735 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.180 0.820 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.182 0.818 36 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.608 -7.557 11.644 14.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.160 3.840 3 H 0.084 0.916 4 C -0.569 4.569 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.301 5.301 13 C -0.082 4.082 14 C 0.331 3.669 15 O -0.418 6.418 16 C -0.058 4.058 17 C -0.142 4.142 18 C -0.138 4.138 19 C -0.082 4.082 20 C -0.041 4.041 21 N -0.211 5.211 22 C -0.134 4.134 23 C -0.198 4.198 24 N -0.007 5.007 25 H 0.115 0.885 26 H 0.051 0.949 27 H 0.032 0.968 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.197 0.803 33 H 0.165 0.835 34 H 0.169 0.831 35 H 0.199 0.801 36 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 2.925 -6.917 12.111 14.251 hybrid contribution -0.044 -0.227 -1.696 1.711 sum 2.881 -7.144 10.416 12.955 Atomic orbital electron populations 1.22103 0.97731 0.99633 1.01163 1.19103 0.91258 0.94557 0.79111 0.91592 1.21294 1.32307 1.13263 0.90024 0.92036 1.24892 0.94785 0.94932 0.99056 1.69878 1.36025 1.22472 1.23933 0.86395 0.78639 0.79562 0.82535 1.19744 1.20819 1.20834 1.48141 1.47092 1.11948 1.22919 1.22359 1.02341 0.83162 1.00320 1.17531 0.80535 0.86833 0.81999 1.90784 1.61323 1.14362 1.75308 1.20551 1.04286 0.92295 0.88645 1.22404 0.98613 0.91398 1.01802 1.21005 0.99187 1.01029 0.92622 1.20369 0.99663 0.88562 0.99585 1.20990 1.03268 0.94742 0.85109 1.70605 1.23980 0.99641 1.26903 1.22537 1.01104 0.96310 0.93480 1.23078 1.11965 0.84883 0.99888 1.42598 1.38039 1.08356 1.11683 0.88477 0.94853 0.96799 0.92535 0.91728 0.90463 0.90915 0.80345 0.83470 0.83149 0.80144 0.79310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 8.93 37.15 0.33 -3.03 16 2 C 0.26 6.27 2.63 -69.08 -0.18 6.09 16 3 H 0.07 1.87 6.91 -51.93 -0.36 1.51 16 4 C -0.53 -13.54 8.37 -34.44 -0.29 -13.83 16 5 H 0.06 1.53 7.47 -52.49 -0.39 1.14 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.09 11.32 55.43 0.63 -23.46 16 8 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 9 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.57 -11.47 2.75 -176.67 -0.49 -11.95 16 13 C 0.06 0.91 7.96 59.85 0.48 1.39 16 14 C 0.55 11.18 7.47 -12.69 -0.09 11.09 16 15 O -0.54 -12.85 14.39 5.23 0.08 -12.78 16 16 C 0.05 0.83 6.46 -81.86 -0.53 0.30 16 17 C -0.12 -1.55 7.53 -39.18 -0.30 -1.85 16 18 C -0.11 -1.18 10.04 -39.68 -0.40 -1.58 16 19 C -0.06 -0.73 10.09 -39.30 -0.40 -1.12 16 20 C 0.20 3.17 7.80 -156.03 -1.22 1.95 16 21 N -0.49 -8.03 11.31 -12.76 -0.14 -8.17 16 22 C 0.02 0.26 11.83 -17.94 -0.21 0.05 16 23 C -0.06 -1.07 10.83 -16.58 -0.18 -1.25 16 24 N -0.34 -5.75 2.97 -58.75 -0.17 -5.93 16 25 H 0.10 2.44 6.07 -51.93 -0.32 2.12 16 26 H 0.03 0.69 6.70 -51.93 -0.35 0.34 16 27 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.06 0.88 6.99 -51.93 -0.36 0.51 16 30 H 0.08 1.14 6.46 -51.93 -0.34 0.81 16 31 H 0.07 0.88 4.98 -51.92 -0.26 0.62 16 32 H 0.18 2.00 4.12 -52.49 -0.22 1.78 16 33 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.15 1.35 8.06 -52.48 -0.42 0.92 16 35 H 0.18 2.00 8.06 -52.49 -0.42 1.58 16 36 H 0.19 3.17 6.95 -52.48 -0.36 2.80 16 LS Contribution 296.12 15.07 4.46 4.46 Total: -1.00 -31.75 296.12 -7.52 -39.27 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -3.78 Total: 3.59 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -3.08 Total: -0.17 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: -0.18 Total: -49.51 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.08 Total: -12.78 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.75 -7.52 -39.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770418629.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.429 kcal (2) G-P(sol) polarization free energy of solvation -31.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds