Wall clock time and date at job start Mon Mar 30 2020 01:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47366 * 2 1 4 4 C 1.50700 * 109.47211 * 239.99513 * 2 1 3 5 5 H 1.08000 * 120.00131 * 239.99469 * 4 2 1 6 6 C 1.37876 * 119.99636 * 60.00216 * 4 2 1 7 7 N 1.31515 * 120.00446 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99712 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47437 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47266 * 120.00248 * 8 6 4 11 11 H 1.48503 * 109.47321 * 239.99747 * 8 6 4 12 12 N 1.46505 * 109.46977 * 119.99544 * 2 1 3 13 13 C 1.46497 * 119.99687 * 60.00586 * 12 2 1 14 14 C 1.34780 * 119.99806 * 239.99905 * 12 2 1 15 15 O 1.21649 * 120.00350 * 5.55137 * 14 12 2 16 16 C 1.47053 * 119.99741 * 185.54780 * 14 12 2 17 17 C 1.37602 * 119.93201 * 22.07473 * 16 14 12 18 18 C 1.39939 * 120.01397 * 179.80825 * 17 16 14 19 19 C 1.36206 * 119.91830 * 0.45142 * 18 17 16 20 20 C 1.40918 * 119.80281 * 359.78734 * 19 18 17 21 21 N 1.32573 * 132.19170 * 179.97438 * 20 19 18 22 22 C 1.33238 * 109.14509 * 180.02562 * 21 20 19 23 23 C 1.35453 * 108.57229 * 0.02562 * 22 21 20 24 24 N 1.36250 * 107.17769 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47358 * 60.00086 * 1 2 3 26 26 H 1.09005 * 109.47240 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47757 * 300.00074 * 1 2 3 28 28 H 0.96997 * 120.00559 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.47686 * 83.70670 * 13 12 2 30 30 H 1.09000 * 109.47385 * 323.70070 * 13 12 2 31 31 H 1.09009 * 109.46597 * 203.70799 * 13 12 2 32 32 H 1.07998 * 119.98836 * 0.02562 * 17 16 14 33 33 H 1.08001 * 120.03695 * 180.23208 * 18 17 16 34 34 H 1.08003 * 120.10326 * 179.76639 * 19 18 17 35 35 H 1.07995 * 125.71502 * 180.02562 * 22 21 20 36 36 H 1.08005 * 126.40958 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9427 0.8295 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 3.1484 -2.2858 -3.6036 10 1 1.1678 -1.5868 -4.8164 11 1 3.1472 -0.1860 -4.8160 12 7 2.0182 -0.6905 1.1963 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0041 1.1545 1.9446 16 6 3.3835 -0.7592 3.2192 17 6 3.5435 -2.1244 3.1550 18 6 4.1088 -2.8143 4.2333 19 6 4.4917 -2.1341 5.3495 20 6 4.3206 -0.7367 5.4113 21 7 4.5985 0.1535 6.3534 22 6 4.2441 1.3653 5.9278 23 6 3.7253 1.2503 4.6819 24 7 3.7694 -0.0699 4.3479 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3635 0.5138 0.8900 28 1 0.7087 1.1611 -3.4844 29 1 2.3516 -2.7368 0.8790 30 1 0.6456 -2.2724 1.0845 31 1 1.7326 -2.3137 2.4934 32 1 3.2360 -2.6630 2.2709 33 1 4.2380 -3.8854 4.1818 34 1 4.9248 -2.6641 6.1850 35 1 4.3524 2.2852 6.4831 36 1 3.3481 2.0547 4.0678 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770418629.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:11 Heat of formation + Delta-G solvation = 66.378435 kcal Electronic energy + Delta-G solvation = -20952.398438 eV Core-core repulsion = 17824.574189 eV Total energy + Delta-G solvation = -3127.824249 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.89334 -41.04962 -38.22422 -37.40488 -34.99008 -34.53736 -32.34354 -30.65911 -29.64787 -28.19352 -27.34759 -25.69494 -23.85978 -23.45083 -22.51369 -20.53991 -18.84487 -18.77107 -18.10390 -17.54408 -17.12262 -17.07790 -16.61522 -16.14167 -15.94064 -15.13736 -14.97733 -14.67122 -14.48135 -14.15893 -13.72177 -13.53424 -13.24425 -13.06421 -12.93209 -12.75070 -12.65933 -12.29610 -12.13180 -12.11718 -11.95746 -11.37909 -11.21829 -10.94510 -10.56074 -9.87028 -9.55682 -8.90407 -8.17548 -6.34825 -0.70023 0.27141 1.27624 1.42217 1.43855 1.51200 1.56216 1.98450 2.18096 2.42526 2.50702 3.11547 3.17571 3.32948 3.57835 3.83789 4.04088 4.22326 4.40812 4.41604 4.54254 4.59805 4.67672 4.82408 4.90506 4.94140 4.96781 4.99738 5.08805 5.37742 5.40332 5.52071 5.58975 5.60529 5.89141 5.97167 6.08054 6.54712 6.71461 6.74071 7.04743 7.37357 8.87458 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029598 B = 0.004961 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.777506 B = 5642.262317 C = 6057.997255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.263 3.737 3 H 0.009 0.991 4 C -0.537 4.537 5 H 0.070 0.930 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.968 3.032 9 H -0.259 1.259 10 H -0.275 1.275 11 H -0.290 1.290 12 N -0.577 5.577 13 C 0.054 3.946 14 C 0.537 3.463 15 O -0.593 6.593 16 C 0.003 3.997 17 C -0.088 4.088 18 C -0.096 4.096 19 C -0.056 4.056 20 C 0.187 3.813 21 N -0.513 5.513 22 C 0.027 3.973 23 C -0.103 4.103 24 N -0.345 5.345 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.016 0.984 28 H 0.265 0.735 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.201 0.799 33 H 0.205 0.795 34 H 0.187 0.813 35 H 0.211 0.789 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.519 -11.839 12.584 17.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.162 3.838 3 H 0.027 0.973 4 C -0.576 4.576 5 H 0.088 0.912 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.793 3.207 9 H -0.183 1.183 10 H -0.201 1.201 11 H -0.216 1.216 12 N -0.306 5.306 13 C -0.087 4.087 14 C 0.325 3.675 15 O -0.476 6.476 16 C -0.103 4.103 17 C -0.109 4.109 18 C -0.118 4.118 19 C -0.076 4.076 20 C -0.055 4.055 21 N -0.234 5.234 22 C -0.125 4.125 23 C -0.236 4.236 24 N -0.016 5.016 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.035 0.965 28 H 0.074 0.926 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.123 0.877 32 H 0.217 0.783 33 H 0.222 0.778 34 H 0.204 0.796 35 H 0.227 0.773 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.825 -11.250 13.068 17.662 hybrid contribution -0.300 1.042 -1.921 2.206 sum 3.525 -10.207 11.147 15.520 Atomic orbital electron populations 1.21898 0.96788 1.00590 0.99989 1.18671 0.91909 0.92257 0.80948 0.97290 1.21574 1.32147 1.13334 0.90523 0.91169 1.25756 0.94969 0.95577 1.02153 1.70031 1.37238 1.23953 1.24503 0.85358 0.78173 0.78531 0.78658 1.18279 1.20090 1.21607 1.48049 1.46961 1.13894 1.21654 1.22724 1.02987 0.80213 1.02793 1.18126 0.80041 0.86495 0.82828 1.90743 1.63207 1.16908 1.76705 1.20240 1.08343 0.93544 0.88176 1.22871 0.95472 0.89488 1.03050 1.21598 0.96540 1.03342 0.90361 1.20999 0.98588 0.86717 1.01301 1.21806 1.02807 0.96373 0.84472 1.70622 1.25139 1.00122 1.27510 1.22981 0.99551 0.97192 0.92785 1.23043 1.14445 0.85265 1.00878 1.42685 1.38370 1.08450 1.12129 0.91115 0.92638 0.96482 0.92608 0.89550 0.90264 0.87711 0.78257 0.77795 0.79598 0.77261 0.81176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.25 8.93 71.98 0.64 -5.61 16 2 C 0.26 13.22 2.63 44.24 0.12 13.34 16 3 H 0.01 0.56 6.91 -2.39 -0.02 0.54 16 4 C -0.54 -27.57 8.37 25.60 0.21 -27.36 16 5 H 0.07 3.39 7.47 -2.91 -0.02 3.37 16 6 C 0.02 0.80 5.30 84.65 0.45 1.25 16 7 N -0.92 -51.54 11.32 21.45 0.24 -51.30 16 8 Si 0.97 41.12 29.54 68.60 2.03 43.15 16 9 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 10 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 12 N -0.58 -23.28 2.75 -831.10 -2.29 -25.57 16 13 C 0.05 1.45 7.96 127.77 1.02 2.46 16 14 C 0.54 22.81 7.47 86.55 0.65 23.46 16 15 O -0.59 -30.69 14.39 -4.19 -0.06 -30.75 16 16 C 0.00 0.10 6.46 40.37 0.26 0.36 16 17 C -0.09 -1.90 7.53 22.53 0.17 -1.73 16 18 C -0.10 -1.38 10.04 22.21 0.22 -1.16 16 19 C -0.06 -1.07 10.09 22.45 0.23 -0.84 16 20 C 0.19 5.57 7.80 134.10 1.05 6.61 16 21 N -0.51 -16.30 11.31 -194.29 -2.20 -18.49 16 22 C 0.03 0.81 11.83 83.84 0.99 1.81 16 23 C -0.10 -3.63 10.83 83.36 0.90 -2.73 16 24 N -0.34 -11.88 2.97 -339.78 -1.01 -12.89 16 25 H 0.07 3.69 6.07 -2.39 -0.01 3.67 16 26 H 0.05 2.28 6.70 -2.38 -0.02 2.26 16 27 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 29 H 0.09 1.98 6.99 -2.39 -0.02 1.96 16 30 H 0.08 2.13 6.46 -2.39 -0.02 2.11 16 31 H 0.10 2.12 4.98 -2.38 -0.01 2.11 16 32 H 0.20 3.43 4.12 -2.91 -0.01 3.41 16 33 H 0.21 0.78 8.06 -2.91 -0.02 0.75 16 34 H 0.19 2.22 8.06 -2.91 -0.02 2.20 16 35 H 0.21 4.63 8.06 -2.91 -0.02 4.61 16 36 H 0.17 6.45 6.95 -2.91 -0.02 6.43 16 Total: -1.00 -75.37 296.12 4.74 -70.63 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 1.12 Total: 15.36 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 6.91 Total: 9.85 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -5.25 Total: -108.25 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.06 Total: -30.75 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -75.37 4.74 -70.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770418629.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.013 kcal (2) G-P(sol) polarization free energy of solvation -75.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds