Wall clock time and date at job start Mon Mar 30 2020 01:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47225 * 2 1 4 4 C 1.47192 * 109.47373 * 239.99640 * 2 1 3 5 5 N 2.60800 * 109.47250 * 239.99586 * 2 1 3 6 6 C 1.52996 * 109.47130 * 119.99445 * 2 1 3 7 7 N 1.46502 * 109.47618 * 295.00213 * 6 2 1 8 8 N 1.40096 * 120.00398 * 180.27143 * 7 6 2 9 9 C 1.29809 * 119.99874 * 179.72034 * 8 7 6 10 10 C 1.47394 * 119.99955 * 180.02562 * 9 8 7 11 11 C 1.39796 * 120.08444 * 359.72414 * 10 9 8 12 12 C 1.37729 * 119.91124 * 179.80962 * 11 10 9 13 13 C 1.39066 * 120.08928 * 0.44857 * 12 11 10 14 14 O 1.35674 * 119.91697 * 179.76459 * 13 12 11 15 15 C 1.34807 * 116.99986 * 174.47393 * 14 13 12 16 16 H 1.08001 * 120.00139 * 5.04699 * 15 14 13 17 17 C 1.38613 * 119.99911 * 185.05573 * 15 14 13 18 18 N 1.31584 * 120.00386 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 120.00055 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47180 * 90.00053 * 19 17 15 21 21 H 1.48497 * 109.47185 * 209.99810 * 19 17 15 22 22 H 1.48494 * 109.46711 * 330.00059 * 19 17 15 23 23 C 1.39071 * 120.16873 * 359.78617 * 13 12 11 24 24 C 1.37730 * 120.08898 * 359.97438 * 23 13 12 25 25 H 1.09004 * 109.47246 * 300.00588 * 1 2 3 26 26 H 1.08997 * 109.47313 * 60.00515 * 1 2 3 27 27 H 1.09004 * 109.47236 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47726 * 174.99953 * 6 2 1 29 29 H 1.09005 * 109.47037 * 55.00125 * 6 2 1 30 30 H 0.96999 * 119.99566 * 0.02562 * 7 6 2 31 31 H 1.08000 * 120.00188 * 0.02562 * 9 8 7 32 32 H 1.08006 * 120.04524 * 0.02562 * 11 10 9 33 33 H 1.08004 * 119.95919 * 180.20812 * 12 11 10 34 34 H 0.96993 * 120.00310 * 180.02562 * 18 17 15 35 35 H 1.08004 * 119.95059 * 179.97438 * 23 13 12 36 36 H 1.07997 * 120.04081 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3994 -1.2296 -2.1293 6 6 2.0400 -0.7211 1.2493 7 7 1.6524 0.0355 2.4424 8 7 2.0144 -0.4278 3.7140 9 6 1.6757 0.2455 4.7709 10 6 2.0570 -0.2416 6.1087 11 6 2.7786 -1.4316 6.2417 12 6 3.1365 -1.8814 7.4933 13 6 2.7730 -1.1585 8.6243 14 8 3.1233 -1.6074 9.8558 15 6 2.8420 -0.8056 10.9024 16 1 2.2867 0.1080 10.7488 17 6 3.2656 -1.1535 12.1755 18 7 2.9915 -0.3706 13.1970 19 14 4.2256 -2.7338 12.4412 20 1 5.6785 -2.4597 12.3022 21 1 3.9489 -3.2581 13.8027 22 1 3.8126 -3.7397 11.4299 23 6 2.0509 0.0231 8.4964 24 6 1.6935 0.4822 7.2479 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1263 -0.7994 1.2057 29 1 1.6053 -1.7197 1.2953 30 1 1.1482 0.8592 2.3518 31 1 1.1144 1.1627 4.6699 32 1 3.0581 -1.9956 5.3641 33 1 3.6969 -2.7989 7.5968 34 1 3.2883 -0.6139 14.0878 35 1 1.7701 0.5816 9.3771 36 1 1.1325 1.3997 7.1495 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771105449.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:15 Heat of formation + Delta-G solvation = 65.422585 kcal Electronic energy + Delta-G solvation = -18681.955513 eV Core-core repulsion = 15554.089816 eV Total energy + Delta-G solvation = -3127.865697 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.20597 -38.31135 -37.16903 -36.20999 -34.57295 -32.48700 -31.21352 -30.35326 -28.62474 -26.36674 -25.39797 -23.20893 -22.31977 -21.89740 -20.09841 -18.25698 -17.79091 -17.34124 -16.45445 -16.09034 -15.56653 -14.76492 -14.62576 -14.11662 -13.94149 -13.89423 -13.75358 -13.62507 -13.34922 -13.07630 -12.72164 -12.43751 -12.32441 -12.28636 -12.20939 -11.76465 -11.55013 -11.21314 -11.14864 -10.77850 -10.72094 -10.23464 -9.86611 -9.43478 -8.98941 -8.33555 -8.30042 -6.99983 -6.48911 -4.14009 1.56079 2.15130 2.19344 2.32732 2.83794 3.00720 3.20169 3.23787 3.37445 3.58747 4.18572 4.21452 4.36794 4.55323 4.57951 4.79957 5.05113 5.07779 5.13313 5.16909 5.35603 5.38112 5.52753 5.61318 5.68446 5.74206 6.05444 6.15849 6.42095 6.54365 6.76413 6.96236 7.08199 7.13480 7.20284 7.24767 7.54613 7.73683 7.96478 8.54192 8.85762 9.47440 10.58003 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.050933 B = 0.002521 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.614912 B =11103.407791 C =11552.306393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.004 4.004 3 H 0.120 0.880 4 C 0.215 3.785 5 N -0.427 5.427 6 C 0.172 3.828 7 N -0.674 5.674 8 N -0.253 5.253 9 C 0.105 3.895 10 C -0.145 4.145 11 C -0.038 4.038 12 C -0.199 4.199 13 C 0.170 3.830 14 O -0.211 6.211 15 C -0.389 4.389 16 H 0.109 0.891 17 C 0.064 3.936 18 N -0.875 5.875 19 Si 0.906 3.094 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.259 1.259 23 C -0.226 4.226 24 C -0.045 4.045 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.372 0.628 31 H 0.101 0.899 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.281 0.719 35 H 0.136 0.864 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.776 3.080 -19.528 20.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.027 4.027 3 H 0.137 0.863 4 C -0.104 4.104 5 N -0.102 5.102 6 C 0.046 3.954 7 N -0.413 5.413 8 N -0.059 5.059 9 C -0.106 4.106 10 C -0.149 4.149 11 C -0.058 4.058 12 C -0.218 4.218 13 C 0.115 3.885 14 O -0.114 6.114 15 C -0.465 4.465 16 H 0.126 0.874 17 C -0.140 4.140 18 N -0.512 5.512 19 Si 0.731 3.269 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.183 1.183 23 C -0.246 4.246 24 C -0.066 4.066 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.210 0.790 31 H 0.118 0.882 32 H 0.141 0.859 33 H 0.137 0.863 34 H 0.091 0.909 35 H 0.154 0.846 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.545 1.164 -21.122 21.449 hybrid contribution -0.463 0.918 0.760 1.279 sum -4.008 2.083 -20.362 20.857 Atomic orbital electron populations 1.21844 0.91380 1.03828 1.03398 1.18976 0.97680 0.99606 0.86446 0.86265 1.28769 0.93457 0.93804 0.94396 1.81267 1.08556 1.08921 1.11456 1.20725 0.99644 0.94606 0.80470 1.47621 1.65510 1.27812 1.00366 1.74242 1.16932 1.24305 0.90428 1.23917 0.98808 0.96802 0.91048 1.17885 1.08662 0.98756 0.89550 1.20822 0.94690 0.94344 0.95976 1.20185 1.08463 1.02816 0.90385 1.19306 0.91907 0.91834 0.85403 1.83549 1.71432 1.44287 1.12163 1.20804 1.36512 1.05107 0.84064 0.87358 1.24497 0.96756 0.98889 0.93874 1.69651 1.44534 1.37110 0.99880 0.86173 0.80201 0.82685 0.77846 1.19785 1.20722 1.18250 1.21169 1.06004 0.99349 0.98041 1.20821 0.96820 0.97721 0.91260 0.90374 0.91462 0.91300 0.91839 0.91664 0.79005 0.88190 0.85898 0.86333 0.90914 0.84633 0.86807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 9.02 37.16 0.34 -0.21 16 2 C 0.00 -0.02 2.80 -93.41 -0.26 -0.28 16 3 H 0.12 0.33 8.14 -51.93 -0.42 -0.09 16 4 C 0.21 1.66 14.64 -20.76 -0.30 1.36 16 5 N -0.43 -4.67 18.54 42.16 0.78 -3.89 16 6 C 0.17 1.25 6.02 -4.04 -0.02 1.22 16 7 N -0.67 -6.07 6.36 -10.61 -0.07 -6.14 16 8 N -0.25 -3.25 10.61 32.15 0.34 -2.91 16 9 C 0.10 1.36 10.75 -14.68 -0.16 1.20 16 10 C -0.14 -2.30 5.87 -105.01 -0.62 -2.92 16 11 C -0.04 -0.64 9.57 -39.19 -0.37 -1.02 16 12 C -0.20 -3.81 9.97 -39.46 -0.39 -4.20 16 13 C 0.17 3.73 6.65 -38.97 -0.26 3.47 16 14 O -0.21 -5.35 8.58 0.35 0.00 -5.35 16 15 C -0.39 -10.54 9.94 30.87 0.31 -10.24 16 16 H 0.11 2.97 5.42 -52.49 -0.28 2.68 16 17 C 0.06 1.73 5.49 -17.52 -0.10 1.64 16 18 N -0.87 -24.47 13.96 55.48 0.77 -23.69 16 19 Si 0.91 21.03 28.62 -169.99 -4.86 16.17 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16 23 C -0.23 -4.55 9.15 -39.46 -0.36 -4.91 16 24 C -0.05 -0.75 9.78 -39.19 -0.38 -1.13 16 25 H 0.08 0.25 7.18 -51.93 -0.37 -0.12 16 26 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.37 2.50 7.61 -182.60 -1.39 1.11 16 31 H 0.10 1.03 8.02 -52.49 -0.42 0.61 16 32 H 0.12 1.89 7.55 -52.48 -0.40 1.49 16 33 H 0.12 2.12 8.06 -52.48 -0.42 1.70 16 34 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.14 2.85 5.62 -52.48 -0.29 2.55 16 36 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 324.17 15.07 4.89 4.89 Total: -1.00 -30.52 324.17 -5.99 -36.51 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.25 Total: 0.43 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -2.59 Total: -16.02 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 1.83 Total: -36.63 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: 0.00 Total: -5.35 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.86 Total: 16.17 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.52 -5.99 -36.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771105449.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.936 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds