Wall clock time and date at job start Mon Mar 30 2020 01:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47225 * 2 1 4 4 C 1.47192 * 109.47373 * 239.99640 * 2 1 3 5 5 N 2.60800 * 109.47250 * 239.99586 * 2 1 3 6 6 C 1.52996 * 109.47130 * 119.99445 * 2 1 3 7 7 N 1.46502 * 109.47618 * 295.00213 * 6 2 1 8 8 N 1.40096 * 120.00398 * 180.27143 * 7 6 2 9 9 C 1.29809 * 119.99874 * 179.72034 * 8 7 6 10 10 C 1.47394 * 119.99955 * 180.02562 * 9 8 7 11 11 C 1.39796 * 120.08444 * 359.72414 * 10 9 8 12 12 C 1.37729 * 119.91124 * 179.80962 * 11 10 9 13 13 C 1.39066 * 120.08928 * 0.44857 * 12 11 10 14 14 O 1.35674 * 119.91697 * 179.76459 * 13 12 11 15 15 C 1.34807 * 116.99986 * 174.47393 * 14 13 12 16 16 H 1.08001 * 120.00139 * 5.04699 * 15 14 13 17 17 C 1.38613 * 119.99911 * 185.05573 * 15 14 13 18 18 N 1.31584 * 120.00386 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 120.00055 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47180 * 90.00053 * 19 17 15 21 21 H 1.48497 * 109.47185 * 209.99810 * 19 17 15 22 22 H 1.48494 * 109.46711 * 330.00059 * 19 17 15 23 23 C 1.39071 * 120.16873 * 359.78617 * 13 12 11 24 24 C 1.37730 * 120.08898 * 359.97438 * 23 13 12 25 25 H 1.09004 * 109.47246 * 300.00588 * 1 2 3 26 26 H 1.08997 * 109.47313 * 60.00515 * 1 2 3 27 27 H 1.09004 * 109.47236 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47726 * 174.99953 * 6 2 1 29 29 H 1.09005 * 109.47037 * 55.00125 * 6 2 1 30 30 H 0.96999 * 119.99566 * 0.02562 * 7 6 2 31 31 H 1.08000 * 120.00188 * 0.02562 * 9 8 7 32 32 H 1.08006 * 120.04524 * 0.02562 * 11 10 9 33 33 H 1.08004 * 119.95919 * 180.20812 * 12 11 10 34 34 H 0.96993 * 120.00310 * 180.02562 * 18 17 15 35 35 H 1.08004 * 119.95059 * 179.97438 * 23 13 12 36 36 H 1.07997 * 120.04081 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3994 -1.2296 -2.1293 6 6 2.0400 -0.7211 1.2493 7 7 1.6524 0.0355 2.4424 8 7 2.0144 -0.4278 3.7140 9 6 1.6757 0.2455 4.7709 10 6 2.0570 -0.2416 6.1087 11 6 2.7786 -1.4316 6.2417 12 6 3.1365 -1.8814 7.4933 13 6 2.7730 -1.1585 8.6243 14 8 3.1233 -1.6074 9.8558 15 6 2.8420 -0.8056 10.9024 16 1 2.2867 0.1080 10.7488 17 6 3.2656 -1.1535 12.1755 18 7 2.9915 -0.3706 13.1970 19 14 4.2256 -2.7338 12.4412 20 1 5.6785 -2.4597 12.3022 21 1 3.9489 -3.2581 13.8027 22 1 3.8126 -3.7397 11.4299 23 6 2.0509 0.0231 8.4964 24 6 1.6935 0.4822 7.2479 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1263 -0.7994 1.2057 29 1 1.6053 -1.7197 1.2953 30 1 1.1482 0.8592 2.3518 31 1 1.1144 1.1627 4.6699 32 1 3.0581 -1.9956 5.3641 33 1 3.6969 -2.7989 7.5968 34 1 3.2883 -0.6139 14.0878 35 1 1.7701 0.5816 9.3771 36 1 1.1325 1.3997 7.1495 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771105449.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:14 Heat of formation + Delta-G solvation = 46.452138 kcal Electronic energy + Delta-G solvation = -18682.778133 eV Core-core repulsion = 15554.089816 eV Total energy + Delta-G solvation = -3128.688318 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.80445 -39.02462 -38.48355 -37.22819 -35.39399 -34.40873 -32.21844 -31.81339 -29.78525 -27.46261 -26.73098 -24.16074 -23.66252 -23.02417 -21.37380 -19.80280 -19.11224 -18.56108 -17.38235 -17.09810 -16.45601 -16.15715 -15.79216 -15.67160 -15.43637 -15.15505 -14.69621 -14.53360 -14.30081 -14.07441 -13.96711 -13.90981 -13.71573 -13.41159 -12.87406 -12.73911 -12.58794 -12.44330 -12.39344 -12.02135 -11.94322 -11.88482 -11.25430 -10.87787 -10.81980 -9.76995 -9.52303 -8.46956 -8.25323 -6.17519 0.24982 0.67070 1.34926 1.37150 1.53125 1.54753 1.72985 1.81024 2.10637 2.30874 2.87334 3.01696 3.12964 3.27620 3.72946 3.95169 4.05429 4.16991 4.23875 4.24689 4.52292 4.63542 4.75699 4.78842 4.79675 4.91731 5.01368 5.04634 5.22032 5.33515 5.35000 5.52682 5.64740 5.80905 5.89484 5.94249 6.26345 6.34675 6.51340 6.87729 7.62421 7.66936 8.64058 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.050933 B = 0.002521 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.614912 B =11103.407791 C =11552.306393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.010 3.990 3 H 0.150 0.850 4 C 0.242 3.758 5 N -0.487 5.487 6 C 0.169 3.831 7 N -0.658 5.658 8 N -0.259 5.259 9 C 0.088 3.912 10 C -0.115 4.115 11 C -0.042 4.042 12 C -0.198 4.198 13 C 0.128 3.872 14 O -0.244 6.244 15 C -0.397 4.397 16 H 0.088 0.912 17 C 0.010 3.990 18 N -0.921 5.921 19 Si 0.967 3.033 20 H -0.267 1.267 21 H -0.269 1.269 22 H -0.263 1.263 23 C -0.238 4.238 24 C -0.042 4.042 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.390 0.610 31 H 0.136 0.864 32 H 0.143 0.857 33 H 0.126 0.874 34 H 0.284 0.716 35 H 0.116 0.884 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.423 3.730 -22.805 23.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.012 4.012 3 H 0.168 0.832 4 C -0.076 4.076 5 N -0.163 5.163 6 C 0.043 3.957 7 N -0.399 5.399 8 N -0.067 5.067 9 C -0.123 4.123 10 C -0.118 4.118 11 C -0.062 4.062 12 C -0.217 4.217 13 C 0.078 3.922 14 O -0.150 6.150 15 C -0.473 4.473 16 H 0.105 0.895 17 C -0.189 4.189 18 N -0.561 5.561 19 Si 0.790 3.210 20 H -0.192 1.192 21 H -0.194 1.194 22 H -0.188 1.188 23 C -0.257 4.257 24 C -0.062 4.062 25 H 0.109 0.891 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.230 0.770 31 H 0.153 0.847 32 H 0.161 0.839 33 H 0.144 0.856 34 H 0.094 0.906 35 H 0.134 0.866 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.209 1.829 -24.462 24.889 hybrid contribution -0.378 0.814 1.201 1.499 sum -4.587 2.643 -23.261 23.856 Atomic orbital electron populations 1.21870 0.90219 1.03687 1.04571 1.19049 0.98301 1.00212 0.83672 0.83244 1.29256 0.91823 0.92422 0.94128 1.81303 1.10607 1.10858 1.13526 1.20794 0.99469 0.94669 0.80767 1.47600 1.64726 1.28364 0.99199 1.74071 1.15728 1.24947 0.91924 1.23724 1.00682 0.98487 0.89363 1.18270 1.05160 0.97151 0.91252 1.21098 0.94591 0.95022 0.95500 1.20414 1.08085 1.02803 0.90401 1.19814 0.93699 0.93560 0.85172 1.83499 1.74060 1.44706 1.12764 1.20746 1.36417 1.04926 0.85190 0.89481 1.25249 0.98000 1.01970 0.93635 1.69730 1.46973 1.39069 1.00357 0.85259 0.78931 0.78899 0.77916 1.19201 1.19360 1.18771 1.21228 1.06327 0.98956 0.99178 1.21134 0.96419 0.98957 0.89737 0.89123 0.90390 0.92173 0.92355 0.92200 0.77003 0.84687 0.83916 0.85645 0.90623 0.86621 0.82962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.49 9.02 71.98 0.65 0.16 16 2 C 0.01 0.05 2.80 -12.60 -0.04 0.02 16 3 H 0.15 0.02 8.14 -2.38 -0.02 0.00 16 4 C 0.24 3.14 14.64 89.44 1.31 4.45 16 5 N -0.49 -10.05 18.54 20.00 0.37 -9.68 16 6 C 0.17 1.79 6.02 86.38 0.52 2.31 16 7 N -0.66 -8.56 6.36 -187.48 -1.19 -9.75 16 8 N -0.26 -5.46 10.61 -52.21 -0.55 -6.01 16 9 C 0.09 1.85 10.75 87.40 0.94 2.79 16 10 C -0.12 -3.28 5.87 -20.12 -0.12 -3.40 16 11 C -0.04 -1.32 9.57 22.53 0.22 -1.10 16 12 C -0.20 -7.48 9.97 22.35 0.22 -7.26 16 13 C 0.13 5.78 6.65 22.67 0.15 5.94 16 14 O -0.24 -12.94 8.58 -21.66 -0.19 -13.12 16 15 C -0.40 -22.73 9.94 67.91 0.67 -22.06 16 16 H 0.09 5.16 5.42 -2.91 -0.02 5.14 16 17 C 0.01 0.57 5.49 84.82 0.47 1.04 16 18 N -0.92 -53.95 13.96 21.61 0.30 -53.65 16 19 Si 0.97 44.85 28.62 68.60 1.96 46.81 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 23 C -0.24 -9.72 9.15 22.35 0.20 -9.52 16 24 C -0.04 -1.29 9.78 22.52 0.22 -1.07 16 25 H 0.09 0.13 7.18 -2.38 -0.02 0.11 16 26 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 27 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.39 2.94 7.61 -213.32 -1.62 1.32 16 31 H 0.14 1.94 8.02 -2.91 -0.02 1.92 16 32 H 0.14 3.92 7.55 -2.91 -0.02 3.90 16 33 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 34 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 35 H 0.12 5.16 5.62 -2.91 -0.02 5.15 16 36 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -70.61 324.17 5.61 -65.00 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -0.51 Total: 8.11 kcal Atomic # 6 Polarization: -33.12 SS G_CDS: 5.42 Total: -27.70 kcal Atomic # 7 Polarization: -78.03 SS G_CDS: -1.07 Total: -79.10 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.19 Total: -13.12 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.96 Total: 46.81 kcal Total: -70.61 5.61 -65.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771105449.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.448 kcal (2) G-P(sol) polarization free energy of solvation -70.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds