Wall clock time and date at job start Mon Mar 30 2020 01:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47197 * 253.75521 * 3 2 1 5 5 C 1.36941 * 120.00145 * 264.05696 * 4 3 2 6 6 H 1.08004 * 120.00056 * 201.23126 * 5 4 3 7 7 C 1.38814 * 120.00018 * 21.22944 * 5 4 3 8 8 N 1.31616 * 120.00208 * 11.97897 * 7 5 4 9 9 Si 1.86801 * 119.99885 * 191.98613 * 7 5 4 10 10 H 1.48500 * 109.47187 * 84.97711 * 9 7 5 11 11 H 1.48500 * 109.47028 * 204.97560 * 9 7 5 12 12 H 1.48501 * 109.46993 * 324.97833 * 9 7 5 13 13 C 1.46500 * 120.00068 * 84.04853 * 4 3 2 14 14 C 1.50698 * 109.47402 * 270.00607 * 13 4 3 15 15 O 1.21276 * 119.99950 * 359.97438 * 14 13 4 16 16 N 1.34779 * 120.00046 * 179.97438 * 14 13 4 17 17 C 1.46497 * 120.00117 * 179.97438 * 16 14 13 18 18 C 1.50693 * 109.47253 * 180.02562 * 17 16 14 19 19 C 1.38224 * 119.62278 * 95.02085 * 18 17 16 20 20 C 1.38626 * 119.16579 * 179.74640 * 19 18 17 21 21 C 1.38676 * 118.41573 * 0.47018 * 20 19 18 22 22 C 1.38179 * 119.16289 * 359.51156 * 21 20 19 23 23 N 1.31858 * 119.61740 * 274.99666 * 18 17 16 24 24 H 4.40639 * 5.51370 * 179.97438 * 4 1 2 25 25 H 1.08998 * 109.47115 * 133.75986 * 3 2 1 26 26 H 1.08998 * 109.47567 * 13.75634 * 3 2 1 27 27 H 0.97001 * 120.00394 * 180.02562 * 8 7 5 28 28 H 1.08998 * 109.47477 * 150.00075 * 13 4 3 29 29 H 1.09006 * 109.46829 * 30.00579 * 13 4 3 30 30 H 0.97003 * 119.99647 * 0.02562 * 16 14 13 31 31 H 1.08998 * 109.47099 * 59.99778 * 17 16 14 32 32 H 1.09006 * 109.47174 * 300.00303 * 17 16 14 33 33 H 1.08003 * 120.42096 * 359.95515 * 19 18 17 34 34 H 1.07994 * 120.79625 * 180.23602 * 20 19 18 35 35 H 1.07998 * 120.41747 * 179.77888 * 21 20 19 36 36 H 1.08007 * 119.61795 * 180.25090 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1341 0.3873 1.3261 5 6 3.4775 1.6890 1.5766 6 1 4.1398 1.9246 2.3966 7 6 2.9744 2.7058 0.7767 8 7 1.9935 2.4570 -0.0648 9 14 3.6899 4.4274 0.8944 10 1 4.8874 4.5265 0.0219 11 1 2.6737 5.4169 0.4544 12 1 4.0772 4.7074 2.3003 13 6 3.2547 -0.6187 2.3842 14 6 1.9636 -0.6912 3.1581 15 8 1.0343 0.0271 2.8558 16 7 1.8416 -1.5543 4.1861 17 6 0.5867 -1.6243 4.9387 18 6 0.7107 -2.6592 6.0270 19 6 1.0724 -2.2691 7.3028 20 6 1.1786 -3.2282 8.2980 21 6 0.9254 -4.5514 7.9689 22 6 0.5683 -4.8662 6.6717 23 7 0.4725 -3.9265 5.7514 24 1 -1.0501 0.0001 -0.0002 25 1 3.0089 0.7116 -0.7422 26 1 3.0098 -0.9973 -0.2444 27 1 1.6422 3.1674 -0.6240 28 1 4.0666 -0.3428 3.0571 29 1 3.4665 -1.5909 1.9389 30 1 2.5850 -2.1285 4.4280 31 1 -0.2256 -1.8996 4.2659 32 1 0.3755 -0.6523 5.3844 33 1 1.2666 -1.2296 7.5223 34 1 1.4556 -2.9522 9.3046 35 1 1.0021 -5.3255 8.7181 36 1 0.3655 -5.8938 6.4084 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799201369.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:01 Heat of formation + Delta-G solvation = 71.271520 kcal Electronic energy + Delta-G solvation = -20102.473306 eV Core-core repulsion = 16974.861238 eV Total energy + Delta-G solvation = -3127.612068 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.26311 -40.20215 -37.51211 -35.75337 -33.42511 -33.37968 -33.11167 -32.36658 -29.28471 -27.90725 -27.06135 -24.43417 -23.89298 -22.79793 -21.25101 -19.33918 -18.33927 -18.28630 -17.50130 -17.22431 -17.07471 -16.53458 -16.09538 -16.00040 -15.37921 -15.07768 -14.86807 -14.59662 -14.20832 -13.98245 -13.82299 -13.57370 -13.21450 -13.10679 -12.68369 -12.54969 -12.43504 -12.22301 -11.93598 -10.97335 -10.84681 -10.72028 -10.54079 -10.40201 -10.18370 -9.98893 -9.90781 -8.85520 -7.75625 -5.26589 0.06141 0.35515 1.49119 1.50599 1.58133 2.05330 2.33987 2.47702 2.60572 2.72909 2.95976 3.24496 3.40904 3.73854 3.86187 4.03039 4.16074 4.18782 4.21882 4.31459 4.52819 4.60170 4.67380 4.75879 4.78678 4.84060 4.98346 5.22261 5.26059 5.38847 5.60696 5.65601 5.74677 5.76856 6.31340 6.78723 7.03214 7.13640 7.53410 7.62964 7.86030 8.25127 9.24286 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028062 B = 0.004098 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.535765 B = 6830.706244 C = 7332.563221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 C -0.105 4.105 3 C 0.270 3.730 4 N -0.575 5.575 5 C -0.267 4.267 6 H 0.081 0.919 7 C -0.047 4.047 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.276 1.276 11 H -0.306 1.306 12 H -0.274 1.274 13 C 0.125 3.875 14 C 0.468 3.532 15 O -0.555 6.555 16 N -0.721 5.721 17 C 0.178 3.822 18 C 0.097 3.903 19 C -0.159 4.159 20 C -0.074 4.074 21 C -0.160 4.160 22 C 0.085 3.915 23 N -0.506 5.506 24 H 0.201 0.799 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.243 0.757 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.407 0.593 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.145 0.855 34 H 0.168 0.832 35 H 0.171 0.829 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.433 -15.418 16.811 22.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.333 4.333 2 C -0.107 4.107 3 C 0.145 3.855 4 N -0.292 5.292 5 C -0.397 4.397 6 H 0.098 0.902 7 C -0.243 4.243 8 N -0.558 5.558 9 Si 0.798 3.202 10 H -0.203 1.203 11 H -0.233 1.233 12 H -0.199 1.199 13 C -0.006 4.006 14 C 0.253 3.747 15 O -0.431 6.431 16 N -0.378 5.378 17 C 0.053 3.947 18 C -0.040 4.040 19 C -0.180 4.180 20 C -0.100 4.100 21 C -0.179 4.179 22 C -0.072 4.072 23 N -0.216 5.216 24 H 0.218 0.782 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.053 0.947 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.242 0.758 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.163 0.837 34 H 0.185 0.815 35 H 0.188 0.812 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 1.510 -14.956 15.589 21.656 hybrid contribution -0.244 1.311 0.781 1.545 sum 1.266 -13.645 16.370 21.349 Atomic orbital electron populations 1.24580 0.96153 1.08361 1.04195 1.24509 0.95955 0.93624 0.96660 1.17936 0.82388 0.97299 0.87898 1.44197 1.73003 1.05679 1.06345 1.19531 1.21876 0.83455 1.14866 0.90174 1.25805 0.96914 1.01321 1.00301 1.70255 1.26294 1.31906 1.27387 0.85267 0.77063 0.79951 0.77899 1.20259 1.23279 1.19889 1.21328 0.92876 0.95116 0.91241 1.23394 0.92647 0.78669 0.79956 1.90745 1.42293 1.42870 1.67154 1.46130 1.15793 1.42224 1.33654 1.19820 0.88013 0.95731 0.91133 1.20981 0.97833 0.91350 0.93839 1.22197 1.00245 1.02374 0.93171 1.22027 0.94844 0.92609 1.00503 1.22591 0.99048 0.98112 0.98180 1.23288 0.95008 0.99226 0.89709 1.67441 1.14260 1.01517 1.38403 0.78160 0.90387 0.91483 0.94737 0.88079 0.87936 0.75763 0.93265 0.91278 0.83742 0.81490 0.81171 0.80492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -16.64 18.77 74.32 1.40 -15.24 16 2 C -0.10 -5.66 9.92 31.13 0.31 -5.35 16 3 C 0.27 13.41 5.45 84.57 0.46 13.87 16 4 N -0.57 -28.41 2.09 -716.90 -1.50 -29.91 16 5 C -0.27 -14.55 9.69 84.03 0.81 -13.74 16 6 H 0.08 4.15 7.85 -2.91 -0.02 4.13 16 7 C -0.05 -2.68 5.07 84.86 0.43 -2.25 16 8 N -0.91 -55.38 9.08 21.65 0.20 -55.18 16 9 Si 0.97 45.96 29.57 68.60 2.03 47.99 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.31 -15.05 7.11 99.48 0.71 -14.34 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 13 C 0.12 4.80 6.18 85.63 0.53 5.33 16 14 C 0.47 19.51 7.80 87.66 0.68 20.20 16 15 O -0.56 -29.95 14.43 -3.02 -0.04 -29.99 16 16 N -0.72 -22.84 5.55 -466.80 -2.59 -25.43 16 17 C 0.18 5.54 5.98 85.63 0.51 6.06 16 18 C 0.10 2.40 6.15 42.55 0.26 2.66 16 19 C -0.16 -2.97 9.72 22.36 0.22 -2.75 16 20 C -0.07 -0.95 10.18 22.47 0.23 -0.72 16 21 C -0.16 -1.87 10.11 22.36 0.23 -1.65 16 22 C 0.09 1.44 11.18 84.67 0.95 2.39 16 23 N -0.51 -12.62 10.27 -183.89 -1.89 -14.51 16 24 H 0.20 9.38 7.80 -4.41 -0.03 9.34 16 25 H 0.08 4.24 6.41 -2.39 -0.02 4.22 16 26 H 0.07 2.78 7.98 -2.39 -0.02 2.76 16 27 H 0.24 14.64 8.31 -92.71 -0.77 13.87 16 28 H 0.10 3.37 8.03 -2.39 -0.02 3.35 16 29 H 0.10 3.22 7.95 -2.38 -0.02 3.21 16 30 H 0.41 10.21 8.46 -92.71 -0.78 9.43 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.07 2.21 8.04 -2.38 -0.02 2.19 16 33 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 34 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 35 H 0.17 0.75 8.06 -2.91 -0.02 0.73 16 36 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -79.31 319.71 3.52 -75.79 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.30 Total: 22.44 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 7.01 Total: 8.80 kcal Atomic # 7 Polarization: -119.25 SS G_CDS: -5.78 Total: -125.03 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.04 Total: -29.99 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -79.31 3.52 -75.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799201369.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.060 kcal (2) G-P(sol) polarization free energy of solvation -79.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds