Wall clock time and date at job start Mon Mar 30 2020 02:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00088 * 2 1 4 4 H 1.48495 * 109.47337 * 270.00652 * 3 2 1 5 5 H 1.48506 * 109.46820 * 30.00774 * 3 2 1 6 6 H 1.48497 * 109.46996 * 150.00271 * 3 2 1 7 7 C 1.38816 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99616 * 202.23104 * 7 2 1 9 9 N 1.36935 * 120.00188 * 22.22314 * 7 2 1 10 10 C 1.46499 * 120.00116 * 196.08998 * 9 7 2 11 11 C 1.52989 * 109.47400 * 270.00225 * 10 9 7 12 12 O 1.42903 * 109.47061 * 64.99799 * 11 10 9 13 13 C 1.42900 * 113.99858 * 179.97438 * 12 11 10 14 14 C 1.53003 * 109.46867 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.82441 * 305.56714 * 14 13 12 16 16 C 1.54386 * 109.83158 * 184.59268 * 14 13 12 17 17 C 1.55301 * 102.25335 * 219.13195 * 16 14 13 18 18 C 1.54951 * 100.94146 * 34.12743 * 17 16 14 19 19 O 1.43236 * 109.83259 * 66.45718 * 14 13 12 20 20 C 1.46505 * 119.99648 * 16.09702 * 9 7 2 21 21 C 1.50698 * 109.46941 * 264.01374 * 20 9 7 22 22 O 1.20830 * 119.99967 * 0.02562 * 21 20 9 23 23 O 1.34229 * 120.00216 * 180.02562 * 21 20 9 24 24 H 0.97001 * 120.00052 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46721 * 149.99889 * 10 9 7 26 26 H 1.08999 * 109.46888 * 30.00843 * 10 9 7 27 27 H 1.09006 * 109.47459 * 305.00056 * 11 10 9 28 28 H 1.09002 * 109.47312 * 185.00232 * 11 10 9 29 29 H 1.09000 * 109.47616 * 300.00165 * 13 12 11 30 30 H 1.09000 * 109.47258 * 60.00827 * 13 12 11 31 31 H 1.09003 * 110.84378 * 337.31741 * 16 14 13 32 32 H 1.08993 * 110.84808 * 100.93938 * 16 14 13 33 33 H 1.08998 * 111.12628 * 276.21461 * 17 16 14 34 34 H 1.08999 * 111.16572 * 152.06191 * 17 16 14 35 35 H 1.09002 * 110.30981 * 204.63883 * 18 17 16 36 36 H 1.09000 * 110.38870 * 82.52162 * 18 17 16 37 37 H 1.08996 * 109.47062 * 24.01403 * 20 9 7 38 38 H 1.09004 * 109.47078 * 144.01358 * 20 9 7 39 39 H 0.96697 * 117.00063 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0301 -1.2370 0.3533 9 7 1.4019 -2.3439 -0.4496 10 6 1.9778 -3.6534 -0.1340 11 6 2.9657 -4.0540 -1.2315 12 8 4.0693 -3.1461 -1.2334 13 6 5.0560 -3.4330 -2.2265 14 6 6.1845 -2.4037 -2.1363 15 1 5.7727 -1.3968 -2.2045 16 6 7.1974 -2.6356 -3.2782 17 6 8.5557 -2.3742 -2.5720 18 6 8.2557 -2.9107 -1.1496 19 8 6.8861 -2.5590 -0.8972 20 6 0.1752 -2.2556 -1.2456 21 6 -1.0212 -2.4273 -0.3455 22 8 -0.8651 -2.6046 0.8395 23 8 -2.2601 -2.3832 -0.8601 24 1 -0.4850 0.8401 0.0004 25 1 1.1816 -4.3953 -0.0734 26 1 2.4986 -3.6004 0.8220 27 1 2.4662 -4.0208 -2.1998 28 1 3.3271 -5.0650 -1.0437 29 1 5.4609 -4.4311 -2.0589 30 1 4.6002 -3.3871 -3.2155 31 1 7.1414 -3.6609 -3.6440 32 1 7.0382 -1.9242 -4.0884 33 1 8.7881 -1.3096 -2.5493 34 1 9.3596 -2.9395 -3.0435 35 1 8.9095 -2.4335 -0.4196 36 1 8.3805 -3.9930 -1.1178 37 1 0.1271 -1.2814 -1.7321 38 1 0.1760 -3.0401 -2.0025 39 1 -2.9960 -2.4981 -0.2433 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833067030.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:57 Heat of formation + Delta-G solvation = -155.841242 kcal Electronic energy + Delta-G solvation = -22029.783255 eV Core-core repulsion = 18552.721167 eV Total energy + Delta-G solvation = -3477.062088 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.45466 -38.65220 -37.21001 -35.42254 -34.29405 -32.19626 -31.64826 -30.42915 -28.54058 -26.79376 -25.15829 -23.37891 -21.79880 -21.33944 -20.88365 -19.71938 -17.05666 -16.75480 -16.58989 -16.09860 -15.87531 -15.32224 -15.08766 -14.79234 -14.43661 -14.02664 -13.71244 -13.51992 -13.17118 -13.01086 -12.54072 -11.91419 -11.81317 -11.71826 -11.39329 -11.18429 -11.17132 -10.95641 -10.85632 -10.74430 -10.57917 -10.42303 -10.07709 -9.87952 -9.78920 -9.33235 -9.12732 -8.95251 -8.42657 -6.92604 -5.77239 -3.07344 3.47091 3.53571 3.58046 3.82524 3.94606 4.20693 4.40651 4.42309 4.67257 4.74753 4.93878 5.16463 5.24271 5.34555 5.44295 5.49391 5.53415 5.58998 5.61908 5.68746 5.78897 5.88225 5.94373 6.00410 6.17304 6.25297 6.40135 6.43409 6.83549 7.03416 7.11480 7.17070 7.86964 7.89647 7.98392 8.33843 9.19921 9.49910 9.85501 10.28171 11.35026 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.019982 B = 0.005337 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.940084 B = 5245.270655 C = 6191.311469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.009 4.009 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.278 1.278 7 C -0.228 4.228 8 H 0.087 0.913 9 N -0.561 5.561 10 C 0.147 3.853 11 C 0.047 3.953 12 O -0.350 6.350 13 C 0.053 3.947 14 C 0.083 3.917 15 H 0.092 0.908 16 C -0.148 4.148 17 C -0.156 4.156 18 C 0.046 3.954 19 O -0.363 6.363 20 C 0.189 3.811 21 C 0.476 3.524 22 O -0.517 6.517 23 O -0.545 6.545 24 H 0.254 0.746 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.038 0.962 28 H 0.032 0.968 29 H 0.040 0.960 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.056 0.944 37 H 0.114 0.886 38 H 0.048 0.952 39 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.926 -7.828 -8.686 16.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.205 4.205 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.222 1.222 6 H -0.203 1.203 7 C -0.357 4.357 8 H 0.104 0.896 9 N -0.280 5.280 10 C 0.020 3.980 11 C -0.033 4.033 12 O -0.268 6.268 13 C -0.025 4.025 14 C 0.025 3.975 15 H 0.110 0.890 16 C -0.186 4.186 17 C -0.194 4.194 18 C -0.031 4.031 19 O -0.282 6.282 20 C 0.059 3.941 21 C 0.316 3.684 22 O -0.403 6.403 23 O -0.355 6.355 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.132 0.868 38 H 0.066 0.934 39 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 11.161 -7.498 -8.257 15.778 hybrid contribution -0.163 0.626 0.123 0.658 sum 10.998 -6.872 -8.134 15.309 Atomic orbital electron populations 1.69865 1.05189 1.25503 1.55464 1.24820 0.95207 0.98472 1.02033 0.86154 0.79183 0.83314 0.77487 1.21668 1.22248 1.20326 1.19424 0.95389 0.84404 1.36481 0.89563 1.43942 1.23192 1.01761 1.59122 1.20843 0.93491 0.87999 0.95667 1.23349 0.88324 0.91009 1.00580 1.88176 1.31410 1.53003 1.54252 1.22784 0.90081 0.97100 0.92532 1.22787 0.91333 1.00016 0.83329 0.89048 1.23111 0.94168 1.02914 0.98418 1.23262 0.97544 1.02402 0.96146 1.23375 0.84465 0.99180 0.96061 1.88607 1.20784 1.90518 1.28298 1.20271 0.81373 1.02308 0.90161 1.25443 0.83097 0.69891 0.89990 1.90506 1.85848 1.45809 1.18117 1.84642 1.17846 1.86448 1.46582 0.93587 0.92809 0.92068 0.94359 0.94997 0.94170 0.93144 0.90485 0.89722 0.90279 0.90121 0.89968 0.92620 0.86802 0.93431 0.76533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.80 9.31 55.49 0.52 -26.29 16 2 C -0.01 -0.26 4.86 -17.43 -0.08 -0.35 16 3 Si 0.91 22.70 29.61 -169.99 -5.03 17.67 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 7 C -0.23 -6.38 9.17 -15.06 -0.14 -6.52 16 8 H 0.09 2.48 7.82 -52.49 -0.41 2.07 16 9 N -0.56 -14.11 2.01 -174.61 -0.35 -14.46 16 10 C 0.15 3.14 6.07 -4.05 -0.02 3.12 16 11 C 0.05 0.84 6.28 37.15 0.23 1.07 16 12 O -0.35 -6.96 9.71 -37.79 -0.37 -7.33 16 13 C 0.05 0.80 5.47 37.16 0.20 1.01 16 14 C 0.08 1.20 3.81 -26.00 -0.10 1.11 16 15 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 16 C -0.15 -1.49 6.54 -24.78 -0.16 -1.65 16 17 C -0.16 -1.41 7.16 -24.48 -0.18 -1.59 16 18 C 0.05 0.52 7.78 38.19 0.30 0.82 16 19 O -0.36 -5.91 11.00 -37.79 -0.42 -6.33 16 20 C 0.19 4.49 5.49 -5.19 -0.03 4.46 16 21 C 0.48 11.72 6.55 36.00 0.24 11.95 16 22 O -0.52 -14.52 16.90 -18.75 -0.32 -14.84 16 23 O -0.54 -11.32 13.42 -39.25 -0.53 -11.84 16 24 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.05 1.07 8.07 -51.93 -0.42 0.65 16 26 H 0.06 1.39 8.04 -51.93 -0.42 0.97 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.68 7.85 -51.93 -0.41 0.27 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.11 2.94 6.35 -51.93 -0.33 2.61 16 38 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 39 H 0.38 6.30 9.10 45.56 0.41 6.72 16 LS Contribution 327.54 15.07 4.94 4.94 Total: -1.00 -34.88 327.54 -6.65 -41.53 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -5.35 Total: 3.51 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: 0.26 Total: 13.43 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.17 Total: -40.74 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -1.63 Total: -40.34 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.03 Total: 17.67 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.88 -6.65 -41.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067030.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.307 kcal (2) G-P(sol) polarization free energy of solvation -34.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds