Wall clock time and date at job start Mon Mar 30 2020 02:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00088 * 2 1 4 4 H 1.48495 * 109.47337 * 270.00652 * 3 2 1 5 5 H 1.48506 * 109.46820 * 30.00774 * 3 2 1 6 6 H 1.48497 * 109.46996 * 150.00271 * 3 2 1 7 7 C 1.38816 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99616 * 202.23104 * 7 2 1 9 9 N 1.36935 * 120.00188 * 22.22314 * 7 2 1 10 10 C 1.46499 * 120.00116 * 196.08998 * 9 7 2 11 11 C 1.52989 * 109.47400 * 270.00225 * 10 9 7 12 12 O 1.42903 * 109.47061 * 64.99799 * 11 10 9 13 13 C 1.42900 * 113.99858 * 179.97438 * 12 11 10 14 14 C 1.53003 * 109.46867 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.82441 * 305.56714 * 14 13 12 16 16 C 1.54386 * 109.83158 * 184.59268 * 14 13 12 17 17 C 1.55301 * 102.25335 * 219.13195 * 16 14 13 18 18 C 1.54951 * 100.94146 * 34.12743 * 17 16 14 19 19 O 1.43236 * 109.83259 * 66.45718 * 14 13 12 20 20 C 1.46505 * 119.99648 * 16.09702 * 9 7 2 21 21 C 1.50698 * 109.46941 * 264.01374 * 20 9 7 22 22 O 1.20830 * 119.99967 * 0.02562 * 21 20 9 23 23 O 1.34229 * 120.00216 * 180.02562 * 21 20 9 24 24 H 0.97001 * 120.00052 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46721 * 149.99889 * 10 9 7 26 26 H 1.08999 * 109.46888 * 30.00843 * 10 9 7 27 27 H 1.09006 * 109.47459 * 305.00056 * 11 10 9 28 28 H 1.09002 * 109.47312 * 185.00232 * 11 10 9 29 29 H 1.09000 * 109.47616 * 300.00165 * 13 12 11 30 30 H 1.09000 * 109.47258 * 60.00827 * 13 12 11 31 31 H 1.09003 * 110.84378 * 337.31741 * 16 14 13 32 32 H 1.08993 * 110.84808 * 100.93938 * 16 14 13 33 33 H 1.08998 * 111.12628 * 276.21461 * 17 16 14 34 34 H 1.08999 * 111.16572 * 152.06191 * 17 16 14 35 35 H 1.09002 * 110.30981 * 204.63883 * 18 17 16 36 36 H 1.09000 * 110.38870 * 82.52162 * 18 17 16 37 37 H 1.08996 * 109.47062 * 24.01403 * 20 9 7 38 38 H 1.09004 * 109.47078 * 144.01358 * 20 9 7 39 39 H 0.96697 * 117.00063 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0301 -1.2370 0.3533 9 7 1.4019 -2.3439 -0.4496 10 6 1.9778 -3.6534 -0.1340 11 6 2.9657 -4.0540 -1.2315 12 8 4.0693 -3.1461 -1.2334 13 6 5.0560 -3.4330 -2.2265 14 6 6.1845 -2.4037 -2.1363 15 1 5.7727 -1.3968 -2.2045 16 6 7.1974 -2.6356 -3.2782 17 6 8.5557 -2.3742 -2.5720 18 6 8.2557 -2.9107 -1.1496 19 8 6.8861 -2.5590 -0.8972 20 6 0.1752 -2.2556 -1.2456 21 6 -1.0212 -2.4273 -0.3455 22 8 -0.8651 -2.6046 0.8395 23 8 -2.2601 -2.3832 -0.8601 24 1 -0.4850 0.8401 0.0004 25 1 1.1816 -4.3953 -0.0734 26 1 2.4986 -3.6004 0.8220 27 1 2.4662 -4.0208 -2.1998 28 1 3.3271 -5.0650 -1.0437 29 1 5.4609 -4.4311 -2.0589 30 1 4.6002 -3.3871 -3.2155 31 1 7.1414 -3.6609 -3.6440 32 1 7.0382 -1.9242 -4.0884 33 1 8.7881 -1.3096 -2.5493 34 1 9.3596 -2.9395 -3.0435 35 1 8.9095 -2.4335 -0.4196 36 1 8.3805 -3.9930 -1.1178 37 1 0.1271 -1.2814 -1.7321 38 1 0.1760 -3.0401 -2.0025 39 1 -2.9960 -2.4981 -0.2433 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833067030.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:57 Heat of formation + Delta-G solvation = -180.861601 kcal Electronic energy + Delta-G solvation = -22030.868219 eV Core-core repulsion = 18552.721167 eV Total energy + Delta-G solvation = -3478.147052 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.57920 -40.44576 -38.66635 -37.19677 -36.20836 -33.59701 -33.08843 -31.67560 -30.14276 -28.72895 -26.27029 -25.20723 -23.07415 -22.57124 -22.00091 -21.55218 -18.78353 -18.49879 -18.03114 -17.43019 -17.12289 -16.95037 -16.80382 -16.24012 -15.98937 -15.74418 -15.26075 -14.93755 -14.72907 -14.17765 -13.95349 -13.42063 -13.39055 -13.09932 -12.75817 -12.64817 -12.60854 -12.36988 -12.17383 -12.11300 -12.06725 -11.97425 -11.89450 -11.78853 -11.65212 -11.09718 -10.51451 -10.41584 -10.31336 -8.92401 -7.91427 -5.21482 1.46769 1.47655 1.58063 2.01756 2.51014 2.79667 2.80264 3.08733 3.29028 3.59846 3.60573 3.95701 3.98758 4.21681 4.28523 4.45745 4.46698 4.48650 4.54882 4.61148 4.73182 4.75558 4.79892 4.83129 4.90574 4.98265 5.07379 5.08843 5.23279 5.29045 5.29940 5.74728 6.15282 6.17797 6.28193 6.60767 7.10676 7.62431 7.84781 8.20776 9.18246 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.019982 B = 0.005337 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.940084 B = 5245.270655 C = 6191.311469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.057 4.057 3 Si 0.964 3.036 4 H -0.280 1.280 5 H -0.300 1.300 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.068 0.932 9 N -0.575 5.575 10 C 0.144 3.856 11 C 0.056 3.944 12 O -0.391 6.391 13 C 0.050 3.950 14 C 0.074 3.926 15 H 0.062 0.938 16 C -0.138 4.138 17 C -0.147 4.147 18 C 0.035 3.965 19 O -0.405 6.405 20 C 0.188 3.812 21 C 0.481 3.519 22 O -0.559 6.559 23 O -0.533 6.533 24 H 0.248 0.752 25 H 0.068 0.932 26 H 0.036 0.964 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.016 -8.904 -10.556 18.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.250 4.250 3 Si 0.794 3.206 4 H -0.207 1.207 5 H -0.228 1.228 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.086 0.914 9 N -0.295 5.295 10 C 0.018 3.982 11 C -0.022 4.022 12 O -0.311 6.311 13 C -0.027 4.027 14 C 0.017 3.983 15 H 0.080 0.920 16 C -0.176 4.176 17 C -0.184 4.184 18 C -0.041 4.041 19 O -0.325 6.325 20 C 0.058 3.942 21 C 0.322 3.678 22 O -0.448 6.448 23 O -0.344 6.344 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.129 0.871 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 12.253 -8.604 -10.158 18.093 hybrid contribution -0.509 0.884 0.726 1.252 sum 11.744 -7.719 -9.432 16.925 Atomic orbital electron populations 1.69997 1.05996 1.25387 1.56938 1.25411 0.95949 1.00850 1.02792 0.85291 0.77696 0.80037 0.77598 1.20692 1.22771 1.20667 1.19410 0.94751 0.85902 1.35665 0.91375 1.44071 1.23802 1.02250 1.59395 1.20990 0.94400 0.86807 0.95960 1.23140 0.87588 0.91937 0.99568 1.88123 1.32605 1.54186 1.56167 1.23001 0.89380 0.98081 0.92214 1.22876 0.92323 0.98371 0.84749 0.91991 1.23104 0.92988 1.04442 0.97059 1.23260 0.97889 1.02781 0.94500 1.23644 0.82457 1.00156 0.97883 1.88557 1.23278 1.90808 1.29900 1.20315 0.80739 1.02585 0.90532 1.25516 0.84216 0.68704 0.89317 1.90491 1.86661 1.47899 1.19766 1.84556 1.17496 1.85660 1.46729 0.94302 0.91385 0.94525 0.93049 0.91974 0.92608 0.91415 0.88616 0.88392 0.90366 0.87121 0.89449 0.91413 0.88945 0.89286 0.74115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.47 9.31 21.65 0.20 -55.27 16 2 C -0.06 -3.25 4.86 84.86 0.41 -2.84 16 3 Si 0.96 47.62 29.61 68.60 2.03 49.65 16 4 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 5 H -0.30 -14.98 7.11 99.48 0.71 -14.28 16 6 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 7 C -0.23 -12.96 9.17 84.03 0.77 -12.19 16 8 H 0.07 4.07 7.82 -2.91 -0.02 4.04 16 9 N -0.58 -28.98 2.01 -706.35 -1.42 -30.40 16 10 C 0.14 6.11 6.07 86.38 0.52 6.63 16 11 C 0.06 1.94 6.28 71.98 0.45 2.39 16 12 O -0.39 -15.42 9.71 -146.53 -1.42 -16.84 16 13 C 0.05 1.45 5.47 71.98 0.39 1.85 16 14 C 0.07 2.12 3.81 31.07 0.12 2.24 16 15 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 16 C -0.14 -2.42 6.54 31.86 0.21 -2.21 16 17 C -0.15 -2.27 7.16 32.05 0.23 -2.04 16 18 C 0.03 0.73 7.78 72.65 0.56 1.30 16 19 O -0.41 -13.21 11.00 -146.53 -1.61 -14.82 16 20 C 0.19 8.78 5.49 85.63 0.47 9.25 16 21 C 0.48 23.32 6.55 71.24 0.47 23.78 16 22 O -0.56 -31.45 16.90 21.95 0.37 -31.08 16 23 O -0.53 -21.25 13.42 -51.40 -0.69 -21.94 16 24 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 25 H 0.07 2.64 8.07 -2.39 -0.02 2.62 16 26 H 0.04 1.69 8.04 -2.39 -0.02 1.68 16 27 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.10 1.33 7.85 -2.39 -0.02 1.31 16 32 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.09 4.77 6.35 -2.39 -0.02 4.75 16 38 H 0.09 3.37 8.12 -2.38 -0.02 3.35 16 39 H 0.40 12.56 9.10 -74.06 -0.67 11.89 16 Total: -1.00 -76.58 327.54 2.44 -74.15 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 0.37 Total: 18.40 kcal Atomic # 6 Polarization: 23.55 SS G_CDS: 4.61 Total: 28.16 kcal Atomic # 7 Polarization: -84.45 SS G_CDS: -1.22 Total: -85.67 kcal Atomic # 8 Polarization: -81.34 SS G_CDS: -3.35 Total: -84.69 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -76.58 2.44 -74.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067030.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.713 kcal (2) G-P(sol) polarization free energy of solvation -76.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds