Wall clock time and date at job start Mon Mar 30 2020 01:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47274 * 300.44309 * 3 2 1 5 5 C 1.37102 * 120.00061 * 95.97577 * 4 3 2 6 6 H 1.07999 * 120.00044 * 159.65020 * 5 4 3 7 7 C 1.38950 * 119.99823 * 339.65036 * 5 4 3 8 8 N 1.31410 * 120.00070 * 348.95279 * 7 5 4 9 9 Si 1.86804 * 119.99756 * 168.95794 * 7 5 4 10 10 H 1.48507 * 109.47004 * 90.00140 * 9 7 5 11 11 H 1.48493 * 109.47027 * 209.99717 * 9 7 5 12 12 H 1.48495 * 109.47108 * 330.00026 * 9 7 5 13 13 C 1.34774 * 119.99985 * 275.97247 * 4 3 2 14 14 O 1.21291 * 120.00233 * 186.14973 * 13 4 3 15 15 C 1.50700 * 120.00098 * 6.15313 * 13 4 3 16 16 H 1.09004 * 109.43036 * 31.97024 * 15 13 4 17 17 C 1.53112 * 109.43334 * 151.82774 * 15 13 4 18 18 C 1.53494 * 109.31364 * 189.98455 * 17 15 13 19 19 C 1.50705 * 108.05905 * 311.32040 * 18 17 15 20 20 C 1.33863 * 128.68170 * 195.77097 * 19 18 17 21 21 N 1.34418 * 107.80416 * 179.86293 * 20 19 18 22 22 C 1.30794 * 109.31903 * 359.97438 * 21 20 19 23 23 N 1.34407 * 108.54976 * 0.05839 * 22 21 20 24 24 C 1.46470 * 128.44197 * 179.81381 * 23 22 21 25 25 H 4.40632 * 5.51424 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.47134 * 180.43977 * 3 2 1 27 27 H 1.09008 * 109.47098 * 60.44353 * 3 2 1 28 28 H 0.97001 * 119.99711 * 180.02562 * 8 7 5 29 29 H 1.09006 * 109.49786 * 309.93396 * 17 15 13 30 30 H 1.08991 * 109.50029 * 70.00533 * 17 15 13 31 31 H 1.08998 * 109.75276 * 191.67187 * 18 17 15 32 32 H 1.09005 * 109.73340 * 70.95424 * 18 17 15 33 33 H 1.08006 * 126.09346 * 359.87917 * 20 19 18 34 34 H 1.07995 * 125.72304 * 180.02562 * 22 21 20 35 35 H 1.09000 * 109.59666 * 317.10843 * 24 23 22 36 36 H 1.09002 * 109.60259 * 77.41853 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.6989 1.1908 5 6 3.4803 -2.0235 1.1141 6 1 4.1315 -2.4556 1.8595 7 6 2.9928 -2.8098 0.0774 8 7 2.0373 -2.3529 -0.7005 9 14 3.6955 -4.5165 -0.2103 10 1 2.9206 -5.5099 0.5759 11 1 3.6076 -4.8510 -1.6544 12 1 5.1168 -4.5455 0.2190 13 6 3.2445 -0.0405 2.3616 14 8 3.7525 -0.5856 3.3186 15 6 2.7360 1.3730 2.4817 16 1 1.8741 1.5052 1.8277 17 6 2.3211 1.6437 3.9305 18 6 1.5769 2.9842 4.0034 19 6 2.3939 4.0129 3.2649 20 6 2.2944 5.3472 3.3062 21 7 3.2308 5.8548 2.4862 22 6 3.9051 4.8757 1.9409 23 7 3.4144 3.7113 2.3991 24 6 3.8439 2.3500 2.0710 25 1 -1.0498 0.0000 0.0003 26 1 3.0089 1.0285 0.0079 27 1 3.0096 -0.5061 -0.8940 28 1 1.6967 -2.9020 -1.4239 29 1 1.6657 0.8445 4.2767 30 1 3.2089 1.6853 4.5615 31 1 1.4604 3.2847 5.0447 32 1 0.5971 2.8871 3.5357 33 1 1.5878 5.9147 3.8938 34 1 4.7192 4.9845 1.2397 35 1 4.0210 2.2710 0.9984 36 1 4.7612 2.1157 2.6112 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847177963.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:26 Heat of formation + Delta-G solvation = 93.386575 kcal Electronic energy + Delta-G solvation = -21147.459997 eV Core-core repulsion = 18020.806909 eV Total energy + Delta-G solvation = -3126.653088 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.17690 -39.18941 -36.08405 -35.19358 -32.86995 -32.25902 -31.35623 -30.32321 -27.74600 -26.57915 -25.24115 -24.08585 -22.28769 -21.24711 -19.57718 -18.46361 -18.01718 -17.10937 -16.68792 -16.47394 -15.44685 -14.72557 -14.66407 -14.32379 -13.88044 -13.83534 -13.64828 -13.59407 -13.03211 -12.91796 -12.39973 -12.31182 -11.82488 -11.62986 -11.35105 -11.12339 -10.87167 -10.65508 -10.63573 -10.43987 -9.81939 -9.53940 -9.42973 -9.34590 -8.97468 -8.61930 -8.19019 -8.00644 -6.43791 -4.05275 2.21963 2.87953 3.07046 3.17008 3.21444 3.29145 3.49537 3.71169 3.91915 4.05344 4.54327 4.67237 4.79789 4.81583 4.92379 5.03909 5.14362 5.25138 5.37626 5.45336 5.48774 5.62855 5.69654 5.86306 5.87502 5.97795 6.17232 6.29384 6.42273 6.54825 6.68420 6.87808 6.93454 7.35330 7.41775 7.88615 8.19471 8.26035 8.68739 8.96499 9.17850 9.69867 10.55162 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029001 B = 0.005286 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.249870 B = 5296.024268 C = 5504.873057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.113 4.113 3 C 0.231 3.769 4 N -0.436 5.436 5 C -0.313 4.313 6 H 0.105 0.895 7 C 0.031 3.969 8 N -0.870 5.870 9 Si 0.929 3.071 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.457 3.543 14 O -0.576 6.576 15 C -0.114 4.114 16 H 0.095 0.905 17 C -0.100 4.100 18 C -0.048 4.048 19 C -0.016 4.016 20 C -0.034 4.034 21 N -0.501 5.501 22 C 0.178 3.822 23 N -0.449 5.449 24 C 0.113 3.887 25 H 0.200 0.800 26 H 0.054 0.946 27 H 0.120 0.880 28 H 0.270 0.730 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.166 0.834 34 H 0.203 0.797 35 H 0.094 0.906 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.440 8.707 1.562 8.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.114 4.114 3 C 0.108 3.892 4 N -0.153 5.153 5 C -0.440 4.440 6 H 0.122 0.878 7 C -0.173 4.173 8 N -0.509 5.509 9 Si 0.755 3.245 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.193 1.193 13 C 0.244 3.756 14 O -0.459 6.459 15 C -0.136 4.136 16 H 0.113 0.887 17 C -0.138 4.138 18 C -0.086 4.086 19 C -0.131 4.131 20 C -0.181 4.181 21 N -0.220 5.220 22 C -0.104 4.104 23 N -0.132 5.132 24 C -0.009 4.009 25 H 0.217 0.783 26 H 0.072 0.928 27 H 0.138 0.862 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.183 0.817 34 H 0.219 0.781 35 H 0.113 0.887 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.038 9.025 1.641 9.173 hybrid contribution -0.262 -1.811 -0.394 1.872 sum -0.299 7.214 1.247 7.327 Atomic orbital electron populations 1.24307 0.95424 1.05666 1.02558 1.23122 0.94315 0.95775 0.98233 1.18423 0.84374 0.94223 0.92207 1.43721 1.55414 1.10295 1.05907 1.19712 1.28009 0.84026 1.12243 0.87753 1.25370 0.95164 0.99982 0.96775 1.69970 1.24100 1.37847 1.18964 0.85886 0.79529 0.81588 0.77484 1.20314 1.20762 1.19340 1.19671 0.85313 0.87335 0.83298 1.90543 1.48124 1.69696 1.37588 1.21582 0.98509 0.94057 0.99473 0.88722 1.21411 1.01235 0.96373 0.94767 1.20292 0.97240 0.91640 0.99434 1.21240 0.95742 0.96361 0.99766 1.21756 1.01839 0.90785 1.03715 1.70455 1.08462 1.30986 1.12066 1.24739 1.02548 0.79625 1.03471 1.45491 1.26532 1.07655 1.33510 1.22031 0.98685 0.77938 1.02251 0.78334 0.92829 0.86196 0.91905 0.90218 0.90806 0.89464 0.90024 0.81660 0.78082 0.88741 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.15 19.25 29.55 0.57 -4.58 16 2 C -0.11 -2.40 10.19 -37.12 -0.38 -2.77 16 3 C 0.23 4.77 4.79 -6.83 -0.03 4.74 16 4 N -0.44 -10.19 2.60 -117.93 -0.31 -10.50 16 5 C -0.31 -8.08 9.37 -14.93 -0.14 -8.22 16 6 H 0.10 2.84 7.33 -52.49 -0.38 2.46 16 7 C 0.03 0.76 5.11 -17.47 -0.09 0.67 16 8 N -0.87 -21.64 9.02 55.50 0.50 -21.14 16 9 Si 0.93 19.66 29.57 -169.99 -5.03 14.63 16 10 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 11 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 12 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 13 C 0.46 10.12 6.60 -10.99 -0.07 10.04 16 14 O -0.58 -14.69 15.98 5.55 0.09 -14.60 16 15 C -0.11 -1.96 1.70 -91.55 -0.16 -2.11 16 16 H 0.09 1.67 6.01 -51.93 -0.31 1.36 16 17 C -0.10 -1.56 4.68 -26.42 -0.12 -1.68 16 18 C -0.05 -0.61 6.31 -27.62 -0.17 -0.79 16 19 C -0.02 -0.23 6.57 -81.73 -0.54 -0.77 16 20 C -0.03 -0.48 11.84 -17.96 -0.21 -0.70 16 21 N -0.50 -7.82 11.27 -14.87 -0.17 -7.99 16 22 C 0.18 2.46 12.66 -90.71 -1.15 1.31 16 23 N -0.45 -6.47 3.13 -114.07 -0.36 -6.83 16 24 C 0.11 1.66 6.13 -3.90 -0.02 1.64 16 25 H 0.20 3.20 7.80 -54.10 -0.42 2.78 16 26 H 0.05 0.92 5.50 -51.93 -0.29 0.64 16 27 H 0.12 2.65 6.31 -51.92 -0.33 2.33 16 28 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 29 H 0.08 1.31 8.11 -51.93 -0.42 0.89 16 30 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.17 1.95 8.06 -52.48 -0.42 1.53 16 34 H 0.20 2.02 8.06 -52.49 -0.42 1.60 16 35 H 0.09 1.24 6.50 -51.93 -0.34 0.91 16 36 H 0.09 1.35 8.12 -51.93 -0.42 0.93 16 LS Contribution 302.59 15.07 4.56 4.56 Total: -1.00 -30.59 302.59 -7.39 -37.98 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -4.16 Total: 7.12 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -2.52 Total: -3.23 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: -0.33 Total: -46.47 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: 0.09 Total: -14.60 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.59 -7.39 -37.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847177963.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.367 kcal (2) G-P(sol) polarization free energy of solvation -30.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds