Wall clock time and date at job start Mon Mar 30 2020 01:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47274 * 300.44309 * 3 2 1 5 5 C 1.37102 * 120.00061 * 95.97577 * 4 3 2 6 6 H 1.07999 * 120.00044 * 159.65020 * 5 4 3 7 7 C 1.38950 * 119.99823 * 339.65036 * 5 4 3 8 8 N 1.31410 * 120.00070 * 348.95279 * 7 5 4 9 9 Si 1.86804 * 119.99756 * 168.95794 * 7 5 4 10 10 H 1.48507 * 109.47004 * 90.00140 * 9 7 5 11 11 H 1.48493 * 109.47027 * 209.99717 * 9 7 5 12 12 H 1.48495 * 109.47108 * 330.00026 * 9 7 5 13 13 C 1.34774 * 119.99985 * 275.97247 * 4 3 2 14 14 O 1.21291 * 120.00233 * 186.14973 * 13 4 3 15 15 C 1.50700 * 120.00098 * 6.15313 * 13 4 3 16 16 H 1.09004 * 109.43036 * 31.97024 * 15 13 4 17 17 C 1.53112 * 109.43334 * 151.82774 * 15 13 4 18 18 C 1.53494 * 109.31364 * 189.98455 * 17 15 13 19 19 C 1.50705 * 108.05905 * 311.32040 * 18 17 15 20 20 C 1.33863 * 128.68170 * 195.77097 * 19 18 17 21 21 N 1.34418 * 107.80416 * 179.86293 * 20 19 18 22 22 C 1.30794 * 109.31903 * 359.97438 * 21 20 19 23 23 N 1.34407 * 108.54976 * 0.05839 * 22 21 20 24 24 C 1.46470 * 128.44197 * 179.81381 * 23 22 21 25 25 H 4.40632 * 5.51424 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.47134 * 180.43977 * 3 2 1 27 27 H 1.09008 * 109.47098 * 60.44353 * 3 2 1 28 28 H 0.97001 * 119.99711 * 180.02562 * 8 7 5 29 29 H 1.09006 * 109.49786 * 309.93396 * 17 15 13 30 30 H 1.08991 * 109.50029 * 70.00533 * 17 15 13 31 31 H 1.08998 * 109.75276 * 191.67187 * 18 17 15 32 32 H 1.09005 * 109.73340 * 70.95424 * 18 17 15 33 33 H 1.08006 * 126.09346 * 359.87917 * 20 19 18 34 34 H 1.07995 * 125.72304 * 180.02562 * 22 21 20 35 35 H 1.09000 * 109.59666 * 317.10843 * 24 23 22 36 36 H 1.09002 * 109.60259 * 77.41853 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.6989 1.1908 5 6 3.4803 -2.0235 1.1141 6 1 4.1315 -2.4556 1.8595 7 6 2.9928 -2.8098 0.0774 8 7 2.0373 -2.3529 -0.7005 9 14 3.6955 -4.5165 -0.2103 10 1 2.9206 -5.5099 0.5759 11 1 3.6076 -4.8510 -1.6544 12 1 5.1168 -4.5455 0.2190 13 6 3.2445 -0.0405 2.3616 14 8 3.7525 -0.5856 3.3186 15 6 2.7360 1.3730 2.4817 16 1 1.8741 1.5052 1.8277 17 6 2.3211 1.6437 3.9305 18 6 1.5769 2.9842 4.0034 19 6 2.3939 4.0129 3.2649 20 6 2.2944 5.3472 3.3062 21 7 3.2308 5.8548 2.4862 22 6 3.9051 4.8757 1.9409 23 7 3.4144 3.7113 2.3991 24 6 3.8439 2.3500 2.0710 25 1 -1.0498 0.0000 0.0003 26 1 3.0089 1.0285 0.0079 27 1 3.0096 -0.5061 -0.8940 28 1 1.6967 -2.9020 -1.4239 29 1 1.6657 0.8445 4.2767 30 1 3.2089 1.6853 4.5615 31 1 1.4604 3.2847 5.0447 32 1 0.5971 2.8871 3.5357 33 1 1.5878 5.9147 3.8938 34 1 4.7192 4.9845 1.2397 35 1 4.0210 2.2710 0.9984 36 1 4.7612 2.1157 2.6112 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847177963.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:25 Heat of formation + Delta-G solvation = 77.056925 kcal Electronic energy + Delta-G solvation = -21148.168104 eV Core-core repulsion = 18020.806909 eV Total energy + Delta-G solvation = -3127.361194 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.27932 -40.85649 -37.54586 -36.86093 -34.07994 -33.92852 -33.06247 -31.60489 -28.93503 -28.23221 -26.87387 -25.41438 -23.61783 -22.34029 -21.00886 -19.82593 -19.70529 -18.60617 -18.11862 -17.95934 -16.84224 -16.31819 -16.19850 -15.89408 -15.22812 -15.05005 -14.86097 -14.77964 -14.56526 -14.12992 -14.03532 -13.88809 -13.37091 -13.03669 -12.80965 -12.70958 -12.53222 -12.19620 -12.05390 -11.93599 -11.29801 -11.08400 -10.93607 -10.66720 -10.49349 -10.37534 -9.85273 -9.24961 -8.31472 -6.00503 1.14989 1.34096 1.42578 1.53259 1.68230 1.88828 2.10116 2.21826 2.29326 2.35882 3.01011 3.03197 3.44039 3.57004 3.70492 3.80033 3.83427 3.95461 4.16429 4.23351 4.26325 4.38026 4.50025 4.61748 4.65632 4.83186 4.92058 5.00789 5.05322 5.17689 5.41082 5.43440 5.46790 5.82528 6.02470 6.28913 6.39504 7.09183 7.10919 7.12671 7.35537 7.89228 8.64638 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029001 B = 0.005286 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.249870 B = 5296.024268 C = 5504.873057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.152 4.152 3 C 0.235 3.765 4 N -0.447 5.447 5 C -0.346 4.346 6 H 0.078 0.922 7 C 0.003 3.997 8 N -0.878 5.878 9 Si 0.986 3.014 10 H -0.281 1.281 11 H -0.270 1.270 12 H -0.270 1.270 13 C 0.453 3.547 14 O -0.618 6.618 15 C -0.101 4.101 16 H 0.095 0.905 17 C -0.097 4.097 18 C -0.036 4.036 19 C -0.031 4.031 20 C -0.040 4.040 21 N -0.530 5.530 22 C 0.181 3.819 23 N -0.454 5.454 24 C 0.122 3.878 25 H 0.232 0.768 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.272 0.728 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.186 0.814 34 H 0.234 0.766 35 H 0.111 0.889 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.133 9.736 0.980 9.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.153 4.153 3 C 0.112 3.888 4 N -0.164 5.164 5 C -0.473 4.473 6 H 0.096 0.904 7 C -0.200 4.200 8 N -0.516 5.516 9 Si 0.810 3.190 10 H -0.208 1.208 11 H -0.195 1.195 12 H -0.194 1.194 13 C 0.242 3.758 14 O -0.505 6.505 15 C -0.123 4.123 16 H 0.113 0.887 17 C -0.136 4.136 18 C -0.074 4.074 19 C -0.145 4.145 20 C -0.187 4.187 21 N -0.249 5.249 22 C -0.101 4.101 23 N -0.137 5.137 24 C -0.001 4.001 25 H 0.248 0.752 26 H 0.105 0.895 27 H 0.120 0.880 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.130 0.870 32 H 0.110 0.890 33 H 0.204 0.796 34 H 0.250 0.750 35 H 0.129 0.871 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.752 10.083 1.042 10.164 hybrid contribution -0.078 -2.111 -0.199 2.122 sum -0.829 7.971 0.843 8.059 Atomic orbital electron populations 1.25152 0.96395 1.04160 1.00921 1.23418 0.94979 0.97190 0.99725 1.18424 0.84600 0.95382 0.90351 1.43887 1.55515 1.09832 1.07198 1.19623 1.29185 0.85761 1.12758 0.90373 1.25984 0.95169 1.02763 0.96090 1.70076 1.24092 1.38643 1.18787 0.85036 0.78621 0.77607 0.77697 1.20756 1.19459 1.19447 1.20452 0.83971 0.89063 0.82339 1.90507 1.49804 1.71235 1.38929 1.21420 0.98987 0.91285 1.00617 0.88722 1.21384 1.00928 0.97805 0.93443 1.20279 0.96863 0.89288 1.00998 1.21505 0.96124 0.96773 1.00122 1.22149 1.01913 0.90991 1.03602 1.70481 1.09435 1.31818 1.13123 1.25424 1.02621 0.78903 1.03124 1.45502 1.26901 1.07459 1.33867 1.21869 0.97342 0.77690 1.03166 0.75181 0.89478 0.88013 0.91757 0.91521 0.91831 0.87014 0.88977 0.79647 0.74963 0.87087 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.31 19.25 74.32 1.43 -7.88 16 2 C -0.15 -6.28 10.19 31.13 0.32 -5.96 16 3 C 0.23 9.63 4.79 84.57 0.41 10.03 16 4 N -0.45 -21.23 2.60 -645.41 -1.68 -22.91 16 5 C -0.35 -18.36 9.37 84.04 0.79 -17.57 16 6 H 0.08 4.46 7.33 -2.91 -0.02 4.44 16 7 C 0.00 0.14 5.11 84.93 0.43 0.57 16 8 N -0.88 -43.44 9.02 21.66 0.20 -43.25 16 9 Si 0.99 40.46 29.57 68.60 2.03 42.49 16 10 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 12 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 13 C 0.45 20.39 6.60 87.66 0.58 20.97 16 14 O -0.62 -32.61 15.98 -3.06 -0.05 -32.66 16 15 C -0.10 -3.40 1.70 -11.40 -0.02 -3.42 16 16 H 0.09 3.21 6.01 -2.39 -0.01 3.20 16 17 C -0.10 -2.98 4.68 30.80 0.14 -2.84 16 18 C -0.04 -0.85 6.31 30.02 0.19 -0.66 16 19 C -0.03 -0.82 6.57 40.73 0.27 -0.55 16 20 C -0.04 -1.06 11.84 83.30 0.99 -0.08 16 21 N -0.53 -15.37 11.27 -200.96 -2.26 -17.64 16 22 C 0.18 4.54 12.66 180.38 2.28 6.83 16 23 N -0.45 -12.12 3.13 -514.81 -1.61 -13.73 16 24 C 0.12 3.39 6.13 86.49 0.53 3.92 16 25 H 0.23 6.70 7.80 -4.43 -0.03 6.67 16 26 H 0.09 2.88 5.50 -2.39 -0.01 2.87 16 27 H 0.10 4.53 6.31 -2.38 -0.02 4.51 16 28 H 0.27 12.86 8.31 -92.71 -0.77 12.09 16 29 H 0.07 2.19 8.11 -2.38 -0.02 2.17 16 30 H 0.06 2.06 8.11 -2.39 -0.02 2.04 16 31 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 33 H 0.19 3.90 8.06 -2.91 -0.02 3.87 16 34 H 0.23 3.95 8.06 -2.91 -0.02 3.92 16 35 H 0.11 2.69 6.50 -2.39 -0.02 2.67 16 36 H 0.09 2.55 8.12 -2.39 -0.02 2.53 16 Total: -1.00 -66.42 302.59 6.05 -60.37 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 1.09 Total: 23.96 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 8.34 Total: 3.37 kcal Atomic # 7 Polarization: -92.17 SS G_CDS: -5.36 Total: -97.53 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.05 Total: -32.66 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Total: -66.42 6.05 -60.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847177963.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.428 kcal (2) G-P(sol) polarization free energy of solvation -66.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds