Wall clock time and date at job start Mon Mar 30 2020 01:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47476 * 2 1 4 4 C 1.36788 * 119.99686 * 275.87105 * 3 2 1 5 5 H 1.08003 * 119.99641 * 146.57065 * 4 3 2 6 6 C 1.39067 * 120.00252 * 326.56893 * 4 3 2 7 7 N 1.31355 * 120.00051 * 336.24122 * 6 4 3 8 8 Si 1.86795 * 120.00211 * 156.24215 * 6 4 3 9 9 H 1.48501 * 109.47128 * 59.99806 * 8 6 4 10 10 H 1.48503 * 109.47364 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47177 * 300.00123 * 8 6 4 12 12 C 1.34778 * 120.00121 * 95.87240 * 3 2 1 13 13 O 1.21685 * 119.99789 * 180.02562 * 12 3 2 14 14 C 1.47122 * 119.99903 * 359.97438 * 12 3 2 15 15 C 1.46666 * 120.74512 * 89.98468 * 14 12 3 16 16 C 1.37546 * 135.05936 * 0.33716 * 15 14 12 17 17 N 1.34258 * 107.93026 * 180.02562 * 16 15 14 18 18 H 0.97003 * 125.06800 * 179.87294 * 17 16 15 19 19 N 1.39985 * 109.86787 * 359.61057 * 17 16 15 20 20 C 1.32136 * 108.88405 * 0.24346 * 19 17 16 21 21 C 1.41016 * 134.69439 * 180.02562 * 20 19 17 22 22 C 1.35764 * 120.61611 * 179.97438 * 21 20 19 23 23 C 1.38607 * 120.74807 * 270.00207 * 14 12 3 24 24 C 1.50698 * 119.36921 * 0.02562 * 23 14 12 25 25 H 1.08998 * 109.46990 * 300.00238 * 1 2 3 26 26 H 1.08997 * 109.46506 * 60.00091 * 1 2 3 27 27 H 1.08992 * 109.47202 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47287 * 239.99636 * 2 1 3 29 29 H 1.08999 * 109.46916 * 120.00242 * 2 1 3 30 30 H 0.96999 * 119.99908 * 180.02562 * 7 6 4 31 31 H 1.08002 * 126.03059 * 359.91692 * 16 15 14 32 32 H 1.08002 * 119.69301 * 359.97438 * 21 20 19 33 33 H 1.07991 * 118.65923 * 180.02562 * 22 21 20 34 34 H 1.09004 * 109.46819 * 270.02329 * 24 23 14 35 35 H 1.09004 * 109.46725 * 30.01361 * 24 23 14 36 36 H 1.08992 * 109.47303 * 150.01913 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1322 2.0663 -1.1784 5 1 1.9568 3.1317 -1.2027 6 6 2.4736 1.3911 -2.3452 7 7 3.1263 0.2531 -2.2785 8 14 2.0042 2.1023 -4.0075 9 1 2.6319 3.4384 -4.1694 10 1 2.4804 1.1983 -5.0851 11 1 0.5274 2.2361 -4.0894 12 6 2.3557 1.9767 1.1611 13 8 2.7609 3.1241 1.1611 14 6 2.2328 1.2399 2.4286 15 6 3.3521 0.4456 2.9457 16 6 4.6325 0.1761 2.5216 17 7 5.2056 -0.6338 3.4261 18 1 6.1100 -0.9800 3.3704 19 7 4.3054 -0.8995 4.4647 20 6 3.1706 -0.2687 4.2189 21 6 1.9322 -0.1597 4.8845 22 6 0.9289 0.5894 4.3598 23 6 1.0566 1.2805 3.1607 24 6 -0.1062 2.0898 2.6469 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.3647 -0.2177 -3.0924 31 1 5.0946 0.5487 1.6193 32 1 1.7805 -0.6770 5.8204 33 1 -0.0063 0.6512 4.8963 34 1 -0.0400 3.1068 3.0335 35 1 -0.0796 2.1129 1.5574 36 1 -1.0398 1.6352 2.9780 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874179482.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:26 Heat of formation + Delta-G solvation = 66.420701 kcal Electronic energy + Delta-G solvation = -21432.041060 eV Core-core repulsion = 18304.218644 eV Total energy + Delta-G solvation = -3127.822416 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.89063 -38.74580 -36.67530 -34.95928 -32.49946 -31.76454 -30.59459 -29.71012 -29.37499 -26.64663 -24.98579 -23.71088 -22.27389 -21.21568 -20.68266 -18.63186 -17.90147 -16.87538 -16.41110 -15.55678 -15.06538 -14.77883 -14.55921 -14.53188 -14.18529 -13.31112 -13.17888 -12.96087 -12.64735 -12.55301 -11.95734 -11.71891 -11.70695 -11.37918 -11.15609 -11.09582 -11.01545 -10.90173 -10.42057 -10.34333 -10.28094 -10.04722 -9.66262 -9.02862 -8.50565 -8.36328 -7.52713 -7.18720 -6.37275 -3.98797 0.84095 2.16458 2.66259 2.93199 3.15386 3.22734 3.26669 3.79247 4.02267 4.15015 4.55009 4.79085 4.96381 5.10323 5.25356 5.46016 5.52236 5.71920 5.82474 5.86696 5.98066 6.04810 6.10145 6.30703 6.33138 6.38467 6.46216 6.68352 6.71878 6.75417 6.96478 7.02813 7.14662 7.31661 7.32368 7.56915 7.83234 8.18567 8.46784 9.11806 9.36224 9.96355 10.63564 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.021841 B = 0.006834 C = 0.005991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.712626 B = 4096.018837 C = 4672.435996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.090 3.910 3 N -0.424 5.424 4 C -0.311 4.311 5 H 0.094 0.906 6 C 0.040 3.960 7 N -0.864 5.864 8 Si 0.916 3.084 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.493 3.507 13 O -0.576 6.576 14 C -0.002 4.002 15 C -0.184 4.184 16 C 0.100 3.900 17 N -0.436 5.436 18 H 0.441 0.559 19 N -0.316 5.316 20 C 0.106 3.894 21 C -0.114 4.114 22 C -0.061 4.061 23 C -0.113 4.113 24 C -0.115 4.115 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.114 0.886 29 H 0.050 0.950 30 H 0.269 0.731 31 H 0.189 0.811 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.332 -4.225 7.781 9.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.034 4.034 3 N -0.141 5.141 4 C -0.439 4.439 5 H 0.112 0.888 6 C -0.165 4.165 7 N -0.502 5.502 8 Si 0.743 3.257 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.280 3.720 13 O -0.460 6.460 14 C -0.007 4.007 15 C -0.194 4.194 16 C -0.056 4.056 17 N -0.137 5.137 18 H 0.285 0.715 19 N -0.144 5.144 20 C -0.049 4.049 21 C -0.135 4.135 22 C -0.083 4.083 23 C -0.115 4.115 24 C -0.171 4.171 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.132 0.868 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.206 0.794 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.412 -4.610 8.442 9.722 hybrid contribution -0.003 0.426 -1.465 1.526 sum -1.415 -4.184 6.977 8.257 Atomic orbital electron populations 1.22256 0.97935 1.00369 1.02037 1.21683 0.92596 0.85195 1.03936 1.43464 1.53956 1.12019 1.04688 1.19399 1.46328 0.94524 0.83649 0.88839 1.25313 0.94776 0.96482 0.99913 1.69843 1.33753 1.17153 1.29425 0.86160 0.79321 0.79067 0.81189 1.19697 1.21004 1.19807 1.18082 0.82541 0.87684 0.83646 1.90673 1.50509 1.18095 1.86732 1.20518 0.91258 0.93640 0.95332 1.20242 0.94447 1.06582 0.98123 1.22652 0.93805 0.93635 0.95461 1.46243 1.14746 1.36338 1.16376 0.71496 1.77564 1.00379 1.27057 1.09418 1.20838 0.93761 0.95866 0.94389 1.19689 0.90078 1.03211 1.00506 1.20332 0.98217 0.95154 0.94622 1.19558 0.94864 1.01312 0.95768 1.20887 0.94843 0.98911 1.02494 0.92856 0.92427 0.93399 0.86842 0.93188 0.92103 0.79388 0.85821 0.85755 0.91494 0.90480 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 10.09 37.16 0.38 -2.78 16 2 C 0.09 1.97 5.67 -4.04 -0.02 1.95 16 3 N -0.42 -10.47 2.54 -116.15 -0.30 -10.76 16 4 C -0.31 -8.33 8.93 -15.03 -0.13 -8.47 16 5 H 0.09 2.63 7.70 -52.48 -0.40 2.23 16 6 C 0.04 1.01 4.99 -17.45 -0.09 0.93 16 7 N -0.86 -22.23 11.25 55.50 0.62 -21.60 16 8 Si 0.92 19.92 29.61 -169.99 -5.03 14.88 16 9 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 10 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 12 C 0.49 12.11 5.49 -12.65 -0.07 12.04 16 13 O -0.58 -16.27 16.92 5.20 0.09 -16.18 16 14 C 0.00 -0.03 3.95 -102.76 -0.41 -0.44 16 15 C -0.18 -3.57 6.01 -103.14 -0.62 -4.19 16 16 C 0.10 1.71 12.00 -16.74 -0.20 1.50 16 17 N -0.44 -6.31 7.20 30.75 0.22 -6.09 16 18 H 0.44 4.45 8.96 -182.68 -1.64 2.81 16 19 N -0.32 -5.36 12.71 33.24 0.42 -4.94 16 20 C 0.11 1.89 7.49 -83.08 -0.62 1.27 16 21 C -0.11 -1.75 10.02 -39.42 -0.40 -2.14 16 22 C -0.06 -0.90 9.45 -40.19 -0.38 -1.28 16 23 C -0.11 -2.01 5.77 -104.21 -0.60 -2.61 16 24 C -0.11 -1.86 8.45 36.00 0.30 -1.56 16 25 H 0.05 0.94 4.83 -51.93 -0.25 0.69 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.11 2.72 5.31 -51.93 -0.28 2.45 16 29 H 0.05 1.07 6.39 -51.93 -0.33 0.73 16 30 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 31 H 0.19 3.07 8.06 -52.49 -0.42 2.64 16 32 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.43 5.25 -51.93 -0.27 1.16 16 36 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 LS Contribution 303.31 15.07 4.57 4.57 Total: -1.00 -31.93 303.31 -7.53 -39.46 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -5.26 Total: 6.43 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -2.86 Total: -5.77 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.97 Total: -43.39 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.09 Total: -16.18 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.03 Total: 14.88 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.93 -7.53 -39.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874179482.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.877 kcal (2) G-P(sol) polarization free energy of solvation -31.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds