Wall clock time and date at job start Mon Mar 30 2020 01:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47476 * 2 1 4 4 C 1.36788 * 119.99686 * 275.87105 * 3 2 1 5 5 H 1.08003 * 119.99641 * 146.57065 * 4 3 2 6 6 C 1.39067 * 120.00252 * 326.56893 * 4 3 2 7 7 N 1.31355 * 120.00051 * 336.24122 * 6 4 3 8 8 Si 1.86795 * 120.00211 * 156.24215 * 6 4 3 9 9 H 1.48501 * 109.47128 * 59.99806 * 8 6 4 10 10 H 1.48503 * 109.47364 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47177 * 300.00123 * 8 6 4 12 12 C 1.34778 * 120.00121 * 95.87240 * 3 2 1 13 13 O 1.21685 * 119.99789 * 180.02562 * 12 3 2 14 14 C 1.47122 * 119.99903 * 359.97438 * 12 3 2 15 15 C 1.46666 * 120.74512 * 89.98468 * 14 12 3 16 16 C 1.37546 * 135.05936 * 0.33716 * 15 14 12 17 17 N 1.34258 * 107.93026 * 180.02562 * 16 15 14 18 18 H 0.97003 * 125.06800 * 179.87294 * 17 16 15 19 19 N 1.39985 * 109.86787 * 359.61057 * 17 16 15 20 20 C 1.32136 * 108.88405 * 0.24346 * 19 17 16 21 21 C 1.41016 * 134.69439 * 180.02562 * 20 19 17 22 22 C 1.35764 * 120.61611 * 179.97438 * 21 20 19 23 23 C 1.38607 * 120.74807 * 270.00207 * 14 12 3 24 24 C 1.50698 * 119.36921 * 0.02562 * 23 14 12 25 25 H 1.08998 * 109.46990 * 300.00238 * 1 2 3 26 26 H 1.08997 * 109.46506 * 60.00091 * 1 2 3 27 27 H 1.08992 * 109.47202 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47287 * 239.99636 * 2 1 3 29 29 H 1.08999 * 109.46916 * 120.00242 * 2 1 3 30 30 H 0.96999 * 119.99908 * 180.02562 * 7 6 4 31 31 H 1.08002 * 126.03059 * 359.91692 * 16 15 14 32 32 H 1.08002 * 119.69301 * 359.97438 * 21 20 19 33 33 H 1.07991 * 118.65923 * 180.02562 * 22 21 20 34 34 H 1.09004 * 109.46819 * 270.02329 * 24 23 14 35 35 H 1.09004 * 109.46725 * 30.01361 * 24 23 14 36 36 H 1.08992 * 109.47303 * 150.01913 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1322 2.0663 -1.1784 5 1 1.9568 3.1317 -1.2027 6 6 2.4736 1.3911 -2.3452 7 7 3.1263 0.2531 -2.2785 8 14 2.0042 2.1023 -4.0075 9 1 2.6319 3.4384 -4.1694 10 1 2.4804 1.1983 -5.0851 11 1 0.5274 2.2361 -4.0894 12 6 2.3557 1.9767 1.1611 13 8 2.7609 3.1241 1.1611 14 6 2.2328 1.2399 2.4286 15 6 3.3521 0.4456 2.9457 16 6 4.6325 0.1761 2.5216 17 7 5.2056 -0.6338 3.4261 18 1 6.1100 -0.9800 3.3704 19 7 4.3054 -0.8995 4.4647 20 6 3.1706 -0.2687 4.2189 21 6 1.9322 -0.1597 4.8845 22 6 0.9289 0.5894 4.3598 23 6 1.0566 1.2805 3.1607 24 6 -0.1062 2.0898 2.6469 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.3647 -0.2177 -3.0924 31 1 5.0946 0.5487 1.6193 32 1 1.7805 -0.6770 5.8204 33 1 -0.0063 0.6512 4.8963 34 1 -0.0400 3.1068 3.0335 35 1 -0.0796 2.1129 1.5574 36 1 -1.0398 1.6352 2.9780 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874179482.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:25 Heat of formation + Delta-G solvation = 45.995298 kcal Electronic energy + Delta-G solvation = -21432.926772 eV Core-core repulsion = 18304.218644 eV Total energy + Delta-G solvation = -3128.708128 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.21356 -40.49038 -38.06618 -36.88840 -34.13729 -33.37984 -31.96141 -31.22152 -30.87502 -28.16763 -26.72869 -25.07580 -23.90961 -22.78861 -22.00824 -20.25028 -19.17756 -18.74199 -18.01095 -17.28441 -16.65921 -16.21515 -16.08135 -15.93337 -15.76028 -14.85576 -14.75899 -14.58447 -14.10145 -14.02907 -13.57053 -13.42693 -13.16909 -12.82289 -12.77939 -12.61793 -12.41517 -12.33519 -12.22142 -12.08536 -11.73116 -11.68741 -11.17554 -10.86506 -10.36239 -9.66128 -9.47526 -8.54101 -8.32893 -6.03412 -0.47292 0.84747 1.30663 1.38354 1.43725 1.53164 1.73887 1.97888 2.30389 2.73588 3.01393 3.10177 3.28316 3.72740 4.01232 4.03162 4.20538 4.37769 4.39623 4.49407 4.65814 4.69780 4.78644 4.82599 4.87934 4.94856 5.11257 5.24420 5.33031 5.40738 5.46072 5.49175 5.62518 5.70078 5.88109 6.19297 6.20622 6.52487 6.54515 7.15506 7.44554 8.05452 8.66238 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.021841 B = 0.006834 C = 0.005991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.712626 B = 4096.018837 C = 4672.435996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.095 3.905 3 N -0.429 5.429 4 C -0.346 4.346 5 H 0.066 0.934 6 C 0.011 3.989 7 N -0.880 5.880 8 Si 0.977 3.023 9 H -0.277 1.277 10 H -0.272 1.272 11 H -0.264 1.264 12 C 0.493 3.507 13 O -0.631 6.631 14 C -0.049 4.049 15 C -0.210 4.210 16 C 0.088 3.912 17 N -0.412 5.412 18 H 0.459 0.541 19 N -0.319 5.319 20 C 0.091 3.909 21 C -0.101 4.101 22 C -0.061 4.061 23 C -0.097 4.097 24 C -0.116 4.116 25 H 0.065 0.935 26 H 0.043 0.957 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.054 0.946 30 H 0.275 0.725 31 H 0.186 0.814 32 H 0.160 0.840 33 H 0.172 0.828 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.818 -5.798 9.136 11.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.028 4.028 3 N -0.145 5.145 4 C -0.474 4.474 5 H 0.084 0.916 6 C -0.192 4.192 7 N -0.517 5.517 8 Si 0.801 3.199 9 H -0.202 1.202 10 H -0.196 1.196 11 H -0.189 1.189 12 C 0.282 3.718 13 O -0.519 6.519 14 C -0.055 4.055 15 C -0.220 4.220 16 C -0.068 4.068 17 N -0.116 5.116 18 H 0.307 0.693 19 N -0.148 5.148 20 C -0.063 4.063 21 C -0.122 4.122 22 C -0.083 4.083 23 C -0.099 4.099 24 C -0.172 4.172 25 H 0.084 0.916 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.111 0.889 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.203 0.797 32 H 0.177 0.823 33 H 0.189 0.811 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.886 -6.235 9.800 11.969 hybrid contribution 0.507 0.877 -1.818 2.081 sum -2.379 -5.358 7.982 9.904 Atomic orbital electron populations 1.22175 0.95346 1.02214 1.01968 1.21668 0.94685 0.83546 1.02949 1.43622 1.53764 1.12745 1.04355 1.19334 1.48672 0.93923 0.85502 0.91575 1.26007 0.93936 0.96746 1.02530 1.69910 1.33416 1.17771 1.30564 0.85251 0.79310 0.78165 0.77212 1.20238 1.19633 1.18895 1.18633 0.81051 0.87109 0.84968 1.90603 1.52808 1.20620 1.87851 1.20241 0.93711 0.96758 0.94758 1.20457 0.94876 1.07294 0.99371 1.22615 0.93797 0.94481 0.95955 1.46178 1.15257 1.35131 1.15081 0.69281 1.77482 1.00434 1.26911 1.09930 1.21271 0.94963 0.95993 0.94103 1.20210 0.88719 1.02144 1.01108 1.20708 1.00096 0.94079 0.93468 1.19948 0.93810 1.00086 0.96105 1.20950 0.96356 0.99331 1.00605 0.91626 0.93821 0.90455 0.88924 0.92779 0.91517 0.79723 0.82293 0.81054 0.91390 0.93425 0.87674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.85 10.09 71.98 0.73 -5.13 16 2 C 0.09 4.23 5.67 86.38 0.49 4.72 16 3 N -0.43 -22.05 2.54 -639.60 -1.63 -23.68 16 4 C -0.35 -19.43 8.93 84.12 0.75 -18.68 16 5 H 0.07 3.98 7.70 -2.91 -0.02 3.96 16 6 C 0.01 0.59 4.99 84.96 0.42 1.02 16 7 N -0.88 -45.95 11.25 21.68 0.24 -45.70 16 8 Si 0.98 41.30 29.61 68.60 2.03 43.33 16 9 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 11 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 12 C 0.49 25.38 5.49 86.57 0.47 25.85 16 13 O -0.63 -37.92 16.92 -4.30 -0.07 -37.99 16 14 C -0.05 -2.07 3.95 -18.66 -0.07 -2.14 16 15 C -0.21 -8.17 6.01 -18.91 -0.11 -8.28 16 16 C 0.09 3.06 12.00 84.16 1.01 4.07 16 17 N -0.41 -11.60 7.20 -56.63 -0.41 -12.01 16 18 H 0.46 8.75 8.96 -213.39 -1.91 6.84 16 19 N -0.32 -10.23 12.71 -48.76 -0.62 -10.85 16 20 C 0.09 3.07 7.49 42.11 0.32 3.38 16 21 C -0.10 -2.72 10.02 22.38 0.22 -2.50 16 22 C -0.06 -1.57 9.45 21.88 0.21 -1.37 16 23 C -0.10 -3.30 5.77 -19.60 -0.11 -3.41 16 24 C -0.12 -3.58 8.45 71.24 0.60 -2.98 16 25 H 0.06 2.23 4.83 -2.39 -0.01 2.22 16 26 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.09 4.53 5.31 -2.38 -0.01 4.52 16 29 H 0.05 2.33 6.39 -2.39 -0.02 2.32 16 30 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 31 H 0.19 6.41 8.06 -2.91 -0.02 6.39 16 32 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 33 H 0.17 2.79 8.06 -2.92 -0.02 2.77 16 34 H 0.07 2.08 8.14 -2.38 -0.02 2.07 16 35 H 0.05 1.77 5.25 -2.38 -0.01 1.75 16 36 H 0.10 2.30 8.07 -2.39 -0.02 2.28 16 Total: -1.00 -72.54 303.31 3.69 -68.85 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: -0.78 Total: 23.49 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 4.92 Total: -5.44 kcal Atomic # 7 Polarization: -89.84 SS G_CDS: -2.41 Total: -92.24 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -0.07 Total: -37.99 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -72.54 3.69 -68.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874179482.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.850 kcal (2) G-P(sol) polarization free energy of solvation -72.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds