Wall clock time and date at job start Mon Mar 30 2020 01:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47236 * 99.51606 * 3 2 1 5 5 C 1.46507 * 119.99984 * 269.99865 * 4 3 2 6 6 C 1.53001 * 109.47006 * 269.99978 * 5 4 3 7 7 C 1.34775 * 120.00396 * 90.00192 * 4 3 2 8 8 O 1.21583 * 119.99770 * 359.97438 * 7 4 3 9 9 N 1.34772 * 120.00330 * 179.97438 * 7 4 3 10 10 C 1.39248 * 119.99952 * 185.79566 * 9 7 4 11 11 C 1.39684 * 119.57459 * 18.79989 * 10 9 7 12 12 C 1.38652 * 119.49306 * 180.02562 * 11 10 9 13 13 C 1.38350 * 118.67065 * 359.74119 * 12 11 10 14 14 C 1.40574 * 119.13368 * 0.50356 * 13 12 11 15 15 C 1.41332 * 119.79029 * 179.76896 * 14 13 12 16 16 H 1.07998 * 119.99665 * 6.97187 * 15 14 13 17 17 C 1.40024 * 119.99906 * 186.97420 * 15 14 13 18 18 N 1.30742 * 119.99749 * 181.93180 * 17 15 14 19 19 Si 1.86792 * 120.00293 * 1.93669 * 17 15 14 20 20 H 1.48500 * 109.47483 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.46933 * 300.00045 * 19 17 15 22 22 H 1.48500 * 109.47428 * 59.99695 * 19 17 15 23 23 N 1.31908 * 119.57492 * 198.82584 * 10 9 7 24 24 H 4.40634 * 5.51482 * 180.02562 * 4 1 2 25 25 H 1.09002 * 109.46933 * 339.51190 * 3 2 1 26 26 H 1.09002 * 109.46863 * 219.51742 * 3 2 1 27 27 H 1.08999 * 109.46799 * 29.99828 * 5 4 3 28 28 H 1.08996 * 109.46849 * 150.00052 * 5 4 3 29 29 H 1.09000 * 109.46640 * 179.97438 * 6 5 4 30 30 H 1.08999 * 109.47219 * 299.99593 * 6 5 4 31 31 H 1.08996 * 109.47257 * 60.00323 * 6 5 4 32 32 H 0.96994 * 120.00240 * 5.80097 * 9 7 4 33 33 H 1.07999 * 120.25659 * 0.02562 * 11 10 9 34 34 H 1.08002 * 120.66481 * 180.02562 * 12 11 10 35 35 H 1.08000 * 120.43514 * 180.25153 * 13 12 11 36 36 H 0.97006 * 120.00386 * 354.83210 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.2292 -1.3621 5 6 3.3790 -0.9078 -2.2530 6 6 4.8242 -1.3825 -2.0889 7 6 3.3584 1.4854 -1.7958 8 8 3.1549 2.4291 -1.0567 9 7 3.8080 1.6957 -3.0488 10 6 4.1544 2.9809 -3.4578 11 6 4.4152 3.9626 -2.4989 12 6 4.7594 5.2419 -2.9080 13 6 4.8395 5.5063 -4.2637 14 6 4.5603 4.4769 -5.1793 15 6 4.6332 4.7329 -6.5674 16 1 5.0105 5.6805 -6.9225 17 6 4.2162 3.7581 -7.4819 18 7 4.3188 3.9802 -8.7663 19 14 3.5131 2.1404 -6.8671 20 1 3.1501 1.2860 -8.0262 21 1 4.5282 1.4430 -6.0374 22 1 2.3026 2.4058 -6.0489 23 7 4.2315 3.2557 -4.7456 24 1 -1.0500 0.0002 0.0000 25 1 3.0097 -0.9619 0.3597 26 1 3.0089 0.7936 0.6539 27 1 2.6985 -1.7208 -1.9997 28 1 3.2119 -0.6026 -3.2859 29 1 5.0061 -2.2287 -2.7514 30 1 5.5046 -0.5695 -2.3422 31 1 4.9913 -1.6877 -1.0560 32 1 3.8903 0.9518 -3.6658 33 1 4.3492 3.7271 -1.4470 34 1 4.9653 6.0154 -2.1829 35 1 5.1091 6.4917 -4.6139 36 1 4.6131 4.8472 -9.0866 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881152456.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:49 Heat of formation + Delta-G solvation = 64.976543 kcal Electronic energy + Delta-G solvation = -20646.347762 eV Core-core repulsion = 17518.462723 eV Total energy + Delta-G solvation = -3127.885039 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.59762 -38.51183 -36.33265 -34.78069 -33.64639 -33.05212 -31.10066 -30.64982 -29.55531 -27.01321 -25.28699 -23.67999 -22.14691 -21.62685 -19.69319 -18.85444 -18.16179 -17.85015 -16.92185 -16.02358 -15.32092 -15.03545 -14.85635 -14.21806 -14.06376 -13.99469 -13.53388 -13.38447 -13.01764 -12.84172 -12.56739 -12.21138 -12.09819 -11.84501 -11.44988 -11.11286 -10.80833 -10.64184 -10.36963 -10.24867 -10.00009 -9.66387 -9.41999 -9.15311 -8.92484 -8.52832 -7.79261 -7.34751 -7.23255 -4.76034 2.18720 2.40090 2.66951 2.76495 3.12481 3.37648 3.52595 3.65280 3.90464 4.00449 4.31012 4.38288 4.66577 4.70119 4.95731 5.06815 5.20679 5.42959 5.54678 5.55613 5.61106 5.83000 5.84585 6.00492 6.10584 6.24562 6.45935 6.55527 6.67252 6.80870 7.17757 7.30840 7.45911 7.52656 7.63082 7.75483 7.86202 8.17598 8.33762 8.63516 8.72561 9.42304 10.01425 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.020365 B = 0.005902 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.590564 B = 4742.774739 C = 5380.831647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.203 4.203 3 C 0.243 3.757 4 N -0.626 5.626 5 C 0.101 3.899 6 C -0.174 4.174 7 C 0.713 3.287 8 O -0.558 6.558 9 N -0.665 5.665 10 C 0.404 3.596 11 C -0.310 4.310 12 C -0.034 4.034 13 C -0.279 4.279 14 C 0.276 3.724 15 C -0.478 4.478 16 H 0.084 0.916 17 C 0.044 3.956 18 N -0.808 5.808 19 Si 1.156 2.844 20 H -0.333 1.333 21 H -0.285 1.285 22 H -0.294 1.294 23 N -0.601 5.601 24 H 0.216 0.784 25 H 0.101 0.899 26 H 0.110 0.890 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.403 0.597 33 H 0.141 0.859 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.068 -11.744 12.906 17.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.205 4.205 3 C 0.120 3.880 4 N -0.364 5.364 5 C -0.022 4.022 6 C -0.232 4.232 7 C 0.414 3.586 8 O -0.434 6.434 9 N -0.314 5.314 10 C 0.172 3.828 11 C -0.335 4.335 12 C -0.058 4.058 13 C -0.302 4.302 14 C 0.152 3.848 15 C -0.510 4.510 16 H 0.102 0.898 17 C -0.177 4.177 18 N -0.430 5.430 19 Si 0.993 3.007 20 H -0.267 1.267 21 H -0.214 1.214 22 H -0.222 1.222 23 N -0.327 5.327 24 H 0.233 0.767 25 H 0.119 0.881 26 H 0.127 0.873 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.241 0.759 33 H 0.159 0.841 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.847 -13.041 12.272 18.132 hybrid contribution 0.580 1.987 0.558 2.144 sum -2.267 -11.054 12.830 17.087 Atomic orbital electron populations 1.24948 0.95970 1.01372 0.98608 1.23703 0.95139 1.00136 1.01510 1.18125 0.83290 1.03355 0.83196 1.47203 1.69966 1.04682 1.14502 1.21607 0.97406 0.88998 0.94200 1.22243 0.96349 1.02063 1.02568 1.15658 0.77985 0.83021 0.81901 1.90855 1.57103 1.39694 1.55702 1.42498 1.66903 1.09467 1.12508 1.17809 0.92135 0.83117 0.89706 1.21542 1.17828 0.93899 1.00186 1.20928 0.94371 0.95394 0.95094 1.21586 1.15610 0.99802 0.93162 1.18253 0.87371 0.85220 0.94005 1.20712 1.37012 1.03340 0.89920 0.89836 1.27733 0.91387 1.05955 0.92626 1.70641 1.31733 1.25431 1.15210 0.81796 0.76780 0.71820 0.70336 1.26654 1.21377 1.22246 1.65863 1.30423 1.22849 1.13565 0.76724 0.88078 0.87260 0.89724 0.90556 0.91094 0.91885 0.92024 0.75946 0.84131 0.87603 0.87684 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.16 19.25 29.55 0.57 -1.60 16 2 C -0.20 -2.52 13.68 -37.13 -0.51 -3.03 16 3 C 0.24 2.67 5.88 -6.84 -0.04 2.63 16 4 N -0.63 -8.21 2.43 -182.78 -0.44 -8.65 16 5 C 0.10 1.01 5.94 -4.04 -0.02 0.98 16 6 C -0.17 -1.50 10.24 37.16 0.38 -1.12 16 7 C 0.71 12.80 8.11 -86.92 -0.71 12.09 16 8 O -0.56 -11.68 12.72 5.29 0.07 -11.61 16 9 N -0.67 -12.99 5.29 -15.78 -0.08 -13.08 16 10 C 0.40 9.54 7.51 -154.99 -1.16 8.37 16 11 C -0.31 -7.17 8.83 -38.89 -0.34 -7.51 16 12 C -0.03 -0.75 10.15 -39.39 -0.40 -1.15 16 13 C -0.28 -6.78 9.83 -38.66 -0.38 -7.16 16 14 C 0.28 7.36 6.39 -85.00 -0.54 6.82 16 15 C -0.48 -13.18 9.58 -37.74 -0.36 -13.55 16 16 H 0.08 2.29 8.05 -52.49 -0.42 1.87 16 17 C 0.04 1.20 5.52 -17.35 -0.10 1.11 16 18 N -0.81 -22.17 13.65 55.55 0.76 -21.42 16 19 Si 1.16 28.37 25.53 -169.99 -4.34 24.03 16 20 H -0.33 -8.02 7.11 56.52 0.40 -7.62 16 21 H -0.29 -6.69 6.70 56.52 0.38 -6.31 16 22 H -0.29 -7.40 7.10 56.52 0.40 -7.00 16 23 N -0.60 -15.53 4.58 -10.26 -0.05 -15.58 16 24 H 0.22 1.70 7.80 -54.09 -0.42 1.28 16 25 H 0.10 0.73 8.07 -51.93 -0.42 0.31 16 26 H 0.11 1.28 7.42 -51.93 -0.39 0.90 16 27 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 28 H 0.08 0.81 6.29 -51.93 -0.33 0.49 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.40 7.04 6.52 -40.82 -0.27 6.77 16 33 H 0.14 3.20 5.33 -52.50 -0.28 2.92 16 34 H 0.11 2.02 8.06 -52.49 -0.42 1.59 16 35 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16 36 H 0.28 7.42 8.72 -40.82 -0.36 7.07 16 LS Contribution 312.84 15.07 4.71 4.71 Total: -1.00 -32.65 312.84 -7.22 -39.87 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -4.23 Total: 4.82 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -3.62 Total: -3.11 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 0.18 Total: -58.73 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.07 Total: -11.61 kcal Atomic # 14 Polarization: 28.37 SS G_CDS: -4.34 Total: 24.03 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.65 -7.22 -39.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881152456.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.850 kcal (2) G-P(sol) polarization free energy of solvation -32.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds