Wall clock time and date at job start Mon Mar 30 2020 01:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47236 * 99.51606 * 3 2 1 5 5 C 1.46507 * 119.99984 * 269.99865 * 4 3 2 6 6 C 1.53001 * 109.47006 * 269.99978 * 5 4 3 7 7 C 1.34775 * 120.00396 * 90.00192 * 4 3 2 8 8 O 1.21583 * 119.99770 * 359.97438 * 7 4 3 9 9 N 1.34772 * 120.00330 * 179.97438 * 7 4 3 10 10 C 1.39248 * 119.99952 * 185.79566 * 9 7 4 11 11 C 1.39684 * 119.57459 * 18.79989 * 10 9 7 12 12 C 1.38652 * 119.49306 * 180.02562 * 11 10 9 13 13 C 1.38350 * 118.67065 * 359.74119 * 12 11 10 14 14 C 1.40574 * 119.13368 * 0.50356 * 13 12 11 15 15 C 1.41332 * 119.79029 * 179.76896 * 14 13 12 16 16 H 1.07998 * 119.99665 * 6.97187 * 15 14 13 17 17 C 1.40024 * 119.99906 * 186.97420 * 15 14 13 18 18 N 1.30742 * 119.99749 * 181.93180 * 17 15 14 19 19 Si 1.86792 * 120.00293 * 1.93669 * 17 15 14 20 20 H 1.48500 * 109.47483 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.46933 * 300.00045 * 19 17 15 22 22 H 1.48500 * 109.47428 * 59.99695 * 19 17 15 23 23 N 1.31908 * 119.57492 * 198.82584 * 10 9 7 24 24 H 4.40634 * 5.51482 * 180.02562 * 4 1 2 25 25 H 1.09002 * 109.46933 * 339.51190 * 3 2 1 26 26 H 1.09002 * 109.46863 * 219.51742 * 3 2 1 27 27 H 1.08999 * 109.46799 * 29.99828 * 5 4 3 28 28 H 1.08996 * 109.46849 * 150.00052 * 5 4 3 29 29 H 1.09000 * 109.46640 * 179.97438 * 6 5 4 30 30 H 1.08999 * 109.47219 * 299.99593 * 6 5 4 31 31 H 1.08996 * 109.47257 * 60.00323 * 6 5 4 32 32 H 0.96994 * 120.00240 * 5.80097 * 9 7 4 33 33 H 1.07999 * 120.25659 * 0.02562 * 11 10 9 34 34 H 1.08002 * 120.66481 * 180.02562 * 12 11 10 35 35 H 1.08000 * 120.43514 * 180.25153 * 13 12 11 36 36 H 0.97006 * 120.00386 * 354.83210 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.2292 -1.3621 5 6 3.3790 -0.9078 -2.2530 6 6 4.8242 -1.3825 -2.0889 7 6 3.3584 1.4854 -1.7958 8 8 3.1549 2.4291 -1.0567 9 7 3.8080 1.6957 -3.0488 10 6 4.1544 2.9809 -3.4578 11 6 4.4152 3.9626 -2.4989 12 6 4.7594 5.2419 -2.9080 13 6 4.8395 5.5063 -4.2637 14 6 4.5603 4.4769 -5.1793 15 6 4.6332 4.7329 -6.5674 16 1 5.0105 5.6805 -6.9225 17 6 4.2162 3.7581 -7.4819 18 7 4.3188 3.9802 -8.7663 19 14 3.5131 2.1404 -6.8671 20 1 3.1501 1.2860 -8.0262 21 1 4.5282 1.4430 -6.0374 22 1 2.3026 2.4058 -6.0489 23 7 4.2315 3.2557 -4.7456 24 1 -1.0500 0.0002 0.0000 25 1 3.0097 -0.9619 0.3597 26 1 3.0089 0.7936 0.6539 27 1 2.6985 -1.7208 -1.9997 28 1 3.2119 -0.6026 -3.2859 29 1 5.0061 -2.2287 -2.7514 30 1 5.5046 -0.5695 -2.3422 31 1 4.9913 -1.6877 -1.0560 32 1 3.8903 0.9518 -3.6658 33 1 4.3492 3.7271 -1.4470 34 1 4.9653 6.0154 -2.1829 35 1 5.1091 6.4917 -4.6139 36 1 4.6131 4.8472 -9.0866 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881152456.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:49 Heat of formation + Delta-G solvation = 45.860202 kcal Electronic energy + Delta-G solvation = -20647.176709 eV Core-core repulsion = 17518.462723 eV Total energy + Delta-G solvation = -3128.713986 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.03417 -40.24663 -37.53769 -36.39337 -35.45033 -34.11051 -32.99677 -31.58042 -31.27257 -28.13659 -27.17063 -24.69640 -23.81098 -23.35858 -21.21315 -20.41302 -19.78664 -18.84714 -18.36852 -17.39110 -16.89344 -16.61366 -16.38269 -15.83128 -15.39545 -15.19406 -14.84006 -14.81902 -14.45977 -14.24243 -14.12323 -13.72351 -13.56297 -13.02713 -12.82365 -12.71047 -12.26862 -12.07411 -11.80230 -11.64258 -11.56708 -11.17256 -11.10043 -10.93628 -10.42288 -10.05739 -9.75242 -9.27624 -9.17366 -6.82292 0.57319 0.73922 1.08488 1.53321 1.66021 1.88615 1.93019 1.96852 2.07860 2.42568 2.67766 2.74851 3.51674 3.56157 3.92434 4.03424 4.20561 4.27538 4.38946 4.50717 4.58563 4.64324 4.69521 4.79432 4.86551 4.93501 5.06176 5.27794 5.33969 5.35857 5.43160 5.45433 5.58586 5.77891 5.88262 5.99440 6.39975 6.53512 6.66378 6.69813 7.28400 7.49217 7.94787 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.020365 B = 0.005902 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.590564 B = 4742.774739 C = 5380.831647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.237 4.237 3 C 0.239 3.761 4 N -0.613 5.613 5 C 0.094 3.906 6 C -0.168 4.168 7 C 0.709 3.291 8 O -0.592 6.592 9 N -0.664 5.664 10 C 0.393 3.607 11 C -0.306 4.306 12 C -0.026 4.026 13 C -0.293 4.293 14 C 0.260 3.740 15 C -0.508 4.508 16 H 0.070 0.930 17 C 0.016 3.984 18 N -0.829 5.829 19 Si 1.187 2.813 20 H -0.327 1.327 21 H -0.272 1.272 22 H -0.306 1.306 23 N -0.614 5.614 24 H 0.242 0.758 25 H 0.145 0.855 26 H 0.099 0.901 27 H 0.115 0.885 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.412 0.588 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.116 0.884 36 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.470 -13.743 15.059 20.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.238 4.238 3 C 0.118 3.882 4 N -0.349 5.349 5 C -0.028 4.028 6 C -0.226 4.226 7 C 0.411 3.589 8 O -0.471 6.471 9 N -0.313 5.313 10 C 0.161 3.839 11 C -0.331 4.331 12 C -0.050 4.050 13 C -0.315 4.315 14 C 0.134 3.866 15 C -0.541 4.541 16 H 0.088 0.912 17 C -0.201 4.201 18 N -0.453 5.453 19 Si 1.021 2.979 20 H -0.260 1.260 21 H -0.200 1.200 22 H -0.235 1.235 23 N -0.341 5.341 24 H 0.258 0.742 25 H 0.162 0.838 26 H 0.117 0.883 27 H 0.133 0.867 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.251 0.749 33 H 0.167 0.833 34 H 0.162 0.838 35 H 0.134 0.866 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.243 -15.106 14.444 21.150 hybrid contribution 0.653 2.574 0.129 2.659 sum -2.590 -12.531 14.573 19.394 Atomic orbital electron populations 1.25758 0.96989 1.00508 0.97356 1.24135 0.95991 1.01070 1.02643 1.18433 0.82933 1.05200 0.81661 1.47306 1.68366 1.03609 1.15625 1.21907 0.99156 0.88523 0.93196 1.22204 0.94539 1.01789 1.04095 1.15862 0.77730 0.84366 0.80988 1.90809 1.58608 1.41398 1.56246 1.42468 1.67022 1.08300 1.13523 1.18129 0.91636 0.84930 0.89159 1.21873 1.16391 0.94202 1.00612 1.21336 0.92526 0.96092 0.95039 1.21761 1.16069 0.99899 0.93805 1.18444 0.87641 0.86319 0.94147 1.20717 1.39151 1.03345 0.90901 0.91169 1.28478 0.91316 1.07619 0.92638 1.70659 1.33564 1.25619 1.15438 0.81406 0.76116 0.70325 0.70080 1.26000 1.19953 1.23477 1.65853 1.30724 1.22713 1.14776 0.74189 0.83777 0.88337 0.86684 0.91417 0.89134 0.94308 0.90439 0.74903 0.83320 0.83764 0.86578 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.81 19.25 74.32 1.43 -2.38 16 2 C -0.24 -5.30 13.68 31.12 0.43 -4.88 16 3 C 0.24 4.61 5.88 84.57 0.50 5.11 16 4 N -0.61 -14.60 2.43 -850.47 -2.07 -16.67 16 5 C 0.09 1.58 5.94 86.38 0.51 2.09 16 6 C -0.17 -2.37 10.24 71.98 0.74 -1.64 16 7 C 0.71 24.38 8.11 179.06 1.45 25.83 16 8 O -0.59 -24.08 12.72 -3.98 -0.05 -24.13 16 9 N -0.66 -25.09 5.29 -322.12 -1.70 -26.80 16 10 C 0.39 18.21 7.51 133.26 1.00 19.21 16 11 C -0.31 -13.70 8.83 22.72 0.20 -13.50 16 12 C -0.03 -1.10 10.15 22.40 0.23 -0.87 16 13 C -0.29 -14.04 9.83 22.87 0.22 -13.81 16 14 C 0.26 13.94 6.39 40.19 0.26 14.19 16 15 C -0.51 -28.78 9.58 23.46 0.22 -28.55 16 16 H 0.07 4.01 8.05 -2.91 -0.02 3.99 16 17 C 0.02 0.90 5.52 85.29 0.47 1.37 16 18 N -0.83 -46.51 13.65 21.84 0.30 -46.22 16 19 Si 1.19 57.69 25.53 68.60 1.75 59.44 16 20 H -0.33 -15.33 7.11 99.48 0.71 -14.63 16 21 H -0.27 -12.43 6.70 99.48 0.67 -11.76 16 22 H -0.31 -15.29 7.10 99.48 0.71 -14.59 16 23 N -0.61 -31.51 4.58 -186.36 -0.85 -32.36 16 24 H 0.24 3.11 7.80 -4.42 -0.03 3.08 16 25 H 0.14 1.49 8.07 -2.39 -0.02 1.47 16 26 H 0.10 2.14 7.42 -2.39 -0.02 2.12 16 27 H 0.11 1.30 8.07 -2.39 -0.02 1.28 16 28 H 0.07 1.28 6.29 -2.39 -0.02 1.26 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.41 13.82 6.52 -92.71 -0.60 13.22 16 33 H 0.15 6.51 5.33 -3.16 -0.02 6.49 16 34 H 0.14 5.00 8.06 -2.91 -0.02 4.98 16 35 H 0.12 5.19 8.06 -2.91 -0.02 5.17 16 36 H 0.28 15.26 8.72 -92.70 -0.81 14.45 16 Total: -1.00 -70.97 312.84 5.45 -65.52 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.42 Total: 19.03 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 7.66 Total: 2.17 kcal Atomic # 7 Polarization: -117.71 SS G_CDS: -4.33 Total: -122.04 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.05 Total: -24.13 kcal Atomic # 14 Polarization: 57.69 SS G_CDS: 1.75 Total: 59.44 kcal Total: -70.97 5.45 -65.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881152456.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.376 kcal (2) G-P(sol) polarization free energy of solvation -70.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds