Wall clock time and date at job start Mon Mar 30 2020 02:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 120.00141 * 2 1 4 4 H 1.48498 * 109.47028 * 239.99463 * 3 2 1 5 5 H 1.48491 * 109.47075 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47045 * 119.99709 * 3 2 1 7 7 C 1.37875 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00211 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99666 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46971 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.46794 * 179.97438 * 10 9 7 12 12 C 1.30572 * 119.99585 * 119.99882 * 11 10 9 13 13 N 1.36483 * 127.08328 * 359.97438 * 12 11 10 14 14 N 1.28388 * 109.65462 * 179.78996 * 13 12 11 15 15 N 1.28620 * 111.44418 * 0.39543 * 14 13 12 16 16 H 0.97001 * 126.00306 * 179.88248 * 15 14 13 17 17 N 1.38569 * 127.07695 * 179.97438 * 12 11 10 18 18 C 1.46499 * 127.47087 * 359.97438 * 17 12 11 19 19 C 1.50695 * 109.47323 * 84.96803 * 18 17 12 20 20 C 1.38229 * 120.00402 * 269.72717 * 19 18 17 21 21 C 1.38241 * 120.00230 * 179.76638 * 20 19 18 22 22 C 1.38231 * 119.99590 * 0.50568 * 21 20 19 23 23 C 1.38234 * 120.00298 * 359.75133 * 22 21 20 24 24 C 1.38233 * 120.00166 * 359.97438 * 23 22 21 25 25 H 0.97005 * 119.99889 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47346 * 60.00268 * 9 7 2 27 27 H 1.09004 * 109.47520 * 299.99602 * 9 7 2 28 28 H 1.08993 * 109.47478 * 60.00080 * 10 9 7 29 29 H 1.09005 * 109.47162 * 299.99779 * 10 9 7 30 30 H 1.09000 * 109.47192 * 204.97173 * 18 17 12 31 31 H 1.08998 * 109.46730 * 324.97168 * 18 17 12 32 32 H 1.08004 * 120.00211 * 359.97438 * 20 19 18 33 33 H 1.07999 * 120.00232 * 180.23273 * 21 20 19 34 34 H 1.08003 * 120.00257 * 179.72255 * 22 21 20 35 35 H 1.08009 * 120.00390 * 179.97438 * 23 22 21 36 36 H 1.07999 * 120.00545 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5127 -4.9308 0.0024 12 6 1.6763 -5.7795 -0.9762 13 7 2.4865 -5.6341 -2.0649 14 7 2.3936 -6.6725 -2.8141 15 7 1.5678 -7.5306 -2.3282 16 1 1.3375 -8.3866 -2.7220 17 7 1.0631 -7.0134 -1.1232 18 6 0.0976 -7.6423 -0.2185 19 6 -1.2888 -7.1470 -0.5403 20 6 -1.7856 -6.0231 0.0926 21 6 -3.0556 -5.5660 -0.2061 22 6 -3.8326 -6.2391 -1.1302 23 6 -3.3379 -7.3662 -1.7593 24 6 -2.0659 -7.8199 -1.4647 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8712 -3.6040 0.8922 29 1 2.8726 -3.6047 -0.8878 30 1 0.1348 -8.7245 -0.3427 31 1 0.3449 -7.3861 0.8117 32 1 -1.1803 -5.5000 0.8182 33 1 -3.4423 -4.6857 0.2856 34 1 -4.8266 -5.8846 -1.3604 35 1 -3.9452 -7.8923 -2.4811 36 1 -1.6794 -8.7007 -1.9559 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893128912.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:36 Heat of formation + Delta-G solvation = 177.864889 kcal Electronic energy + Delta-G solvation = -20149.330209 eV Core-core repulsion = 17058.633127 eV Total energy + Delta-G solvation = -3090.697082 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.32267 -39.25156 -35.63966 -34.95576 -33.10070 -31.94778 -31.09079 -30.89212 -28.79516 -26.75962 -24.50865 -23.79899 -22.59037 -21.94484 -21.13732 -20.07919 -18.41609 -17.03528 -16.52200 -16.24524 -15.98257 -15.17998 -15.12552 -14.60193 -14.36993 -13.51365 -13.44051 -13.20527 -12.95502 -12.67453 -12.33427 -12.12555 -11.69149 -11.53780 -11.40227 -11.04450 -10.98686 -10.80755 -10.51284 -10.42612 -9.95149 -9.47792 -9.12245 -8.93699 -8.89241 -8.56821 -8.21213 -7.16461 -5.88785 -3.90658 0.90054 1.17481 1.41040 1.61926 3.33320 3.42055 3.45045 3.48869 3.62327 3.87758 4.44272 4.54840 4.57342 4.87485 4.89294 4.94208 5.12388 5.21398 5.30832 5.46889 5.46986 5.55452 5.74452 5.92007 6.06012 6.38365 6.49945 6.54649 6.59636 6.72546 6.83255 6.98069 7.17711 7.21743 7.82075 7.96720 8.12455 8.37608 8.51413 8.72247 9.16266 9.72087 11.22597 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.016566 B = 0.005010 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.759150 B = 5587.305945 C = 6840.459040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.037 3.963 10 C 0.074 3.926 11 N -0.538 5.538 12 C 0.458 3.542 13 N -0.310 5.310 14 N 0.091 4.909 15 N -0.339 5.339 16 H 0.465 0.535 17 N -0.457 5.457 18 C 0.208 3.792 19 C -0.126 4.126 20 C -0.074 4.074 21 C -0.118 4.118 22 C -0.111 4.111 23 C -0.131 4.131 24 C -0.107 4.107 25 H 0.259 0.741 26 H 0.012 0.988 27 H 0.021 0.979 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.138 0.862 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.106 -21.390 -3.109 22.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.055 4.055 11 N -0.275 5.275 12 C 0.091 3.909 13 N -0.210 5.210 14 N 0.095 4.905 15 N -0.188 5.188 16 H 0.319 0.681 17 N -0.277 5.277 18 C 0.087 3.913 19 C -0.128 4.128 20 C -0.092 4.092 21 C -0.136 4.136 22 C -0.129 4.129 23 C -0.149 4.149 24 C -0.126 4.126 25 H 0.069 0.931 26 H 0.030 0.970 27 H 0.039 0.961 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.131 0.869 32 H 0.155 0.845 33 H 0.145 0.855 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.992 -20.792 -3.011 21.594 hybrid contribution -0.076 0.355 -0.268 0.451 sum -5.068 -20.437 -3.279 21.310 Atomic orbital electron populations 1.69975 1.06052 1.26496 1.50995 1.24986 0.94818 0.99105 0.95407 0.86647 0.79556 0.83100 0.78636 1.20224 1.21380 1.20219 1.21172 0.93065 0.90886 1.50469 0.92627 1.19013 0.93823 0.89815 0.97393 1.22158 0.96756 0.86467 1.00145 1.72347 1.29221 1.05815 1.20139 1.21660 0.90602 0.86546 0.92133 1.77012 1.24338 1.14020 1.05625 1.77567 1.00859 0.95084 1.17016 1.47791 1.37657 1.20144 1.13230 0.68132 1.48424 1.45859 1.18034 1.15410 1.20386 0.82391 0.96277 0.92276 1.20173 0.95648 0.97760 0.99209 1.21354 0.95203 0.94058 0.98630 1.21314 0.94582 0.99720 0.97957 1.21236 0.99892 0.95391 0.96386 1.21050 0.95982 0.97412 1.00488 1.20922 0.94640 0.99609 0.97445 0.93098 0.96993 0.96093 0.91644 0.93602 0.89116 0.86909 0.84461 0.85477 0.86120 0.86287 0.86754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.99 13.29 55.43 0.74 -27.25 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 22.49 29.54 -169.99 -5.02 17.47 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -15.48 9.11 -34.44 -0.31 -15.79 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.04 1.06 5.30 -27.88 -0.15 0.91 16 10 C 0.07 1.78 6.33 -4.04 -0.03 1.76 16 11 N -0.54 -11.48 10.60 -61.69 -0.65 -12.13 16 12 C 0.46 8.59 8.69 -319.65 -2.78 5.81 16 13 N -0.31 -5.86 11.41 30.20 0.34 -5.52 16 14 N 0.09 1.32 13.30 60.35 0.80 2.13 16 15 N -0.34 -3.64 8.31 60.35 0.50 -3.14 16 16 H 0.46 2.50 8.96 -331.82 -2.97 -0.48 16 17 N -0.46 -6.15 3.77 -62.89 -0.24 -6.39 16 18 C 0.21 2.15 6.69 -5.20 -0.03 2.11 16 19 C -0.13 -1.50 5.46 -104.63 -0.57 -2.07 16 20 C -0.07 -1.05 9.70 -39.58 -0.38 -1.44 16 21 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 22 C -0.11 -1.29 10.05 -39.59 -0.40 -1.69 16 23 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 24 C -0.11 -1.09 9.70 -39.58 -0.38 -1.48 16 25 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 29 H 0.05 1.12 7.07 -51.93 -0.37 0.76 16 30 H 0.09 0.56 8.09 -51.93 -0.42 0.14 16 31 H 0.11 1.21 8.08 -51.93 -0.42 0.79 16 32 H 0.14 2.18 8.06 -52.48 -0.42 1.76 16 33 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 35 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 36 H 0.11 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 321.09 15.07 4.84 4.84 Total: -1.00 -36.27 321.09 -11.72 -47.99 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -7.11 Total: -3.99 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -5.93 Total: -14.01 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 1.49 Total: -52.30 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -36.27 -11.72 -47.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893128912.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.857 kcal (2) G-P(sol) polarization free energy of solvation -36.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 189.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds