Wall clock time and date at job start Mon Mar 30 2020 02:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 120.00141 * 2 1 4 4 H 1.48498 * 109.47028 * 239.99463 * 3 2 1 5 5 H 1.48491 * 109.47075 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47045 * 119.99709 * 3 2 1 7 7 C 1.37875 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00211 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99666 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46971 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.46794 * 179.97438 * 10 9 7 12 12 C 1.30572 * 119.99585 * 119.99882 * 11 10 9 13 13 N 1.36483 * 127.08328 * 359.97438 * 12 11 10 14 14 N 1.28388 * 109.65462 * 179.78996 * 13 12 11 15 15 N 1.28620 * 111.44418 * 0.39543 * 14 13 12 16 16 H 0.97001 * 126.00306 * 179.88248 * 15 14 13 17 17 N 1.38569 * 127.07695 * 179.97438 * 12 11 10 18 18 C 1.46499 * 127.47087 * 359.97438 * 17 12 11 19 19 C 1.50695 * 109.47323 * 84.96803 * 18 17 12 20 20 C 1.38229 * 120.00402 * 269.72717 * 19 18 17 21 21 C 1.38241 * 120.00230 * 179.76638 * 20 19 18 22 22 C 1.38231 * 119.99590 * 0.50568 * 21 20 19 23 23 C 1.38234 * 120.00298 * 359.75133 * 22 21 20 24 24 C 1.38233 * 120.00166 * 359.97438 * 23 22 21 25 25 H 0.97005 * 119.99889 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47346 * 60.00268 * 9 7 2 27 27 H 1.09004 * 109.47520 * 299.99602 * 9 7 2 28 28 H 1.08993 * 109.47478 * 60.00080 * 10 9 7 29 29 H 1.09005 * 109.47162 * 299.99779 * 10 9 7 30 30 H 1.09000 * 109.47192 * 204.97173 * 18 17 12 31 31 H 1.08998 * 109.46730 * 324.97168 * 18 17 12 32 32 H 1.08004 * 120.00211 * 359.97438 * 20 19 18 33 33 H 1.07999 * 120.00232 * 180.23273 * 21 20 19 34 34 H 1.08003 * 120.00257 * 179.72255 * 22 21 20 35 35 H 1.08009 * 120.00390 * 179.97438 * 23 22 21 36 36 H 1.07999 * 120.00545 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5127 -4.9308 0.0024 12 6 1.6763 -5.7795 -0.9762 13 7 2.4865 -5.6341 -2.0649 14 7 2.3936 -6.6725 -2.8141 15 7 1.5678 -7.5306 -2.3282 16 1 1.3375 -8.3866 -2.7220 17 7 1.0631 -7.0134 -1.1232 18 6 0.0976 -7.6423 -0.2185 19 6 -1.2888 -7.1470 -0.5403 20 6 -1.7856 -6.0231 0.0926 21 6 -3.0556 -5.5660 -0.2061 22 6 -3.8326 -6.2391 -1.1302 23 6 -3.3379 -7.3662 -1.7593 24 6 -2.0659 -7.8199 -1.4647 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8712 -3.6040 0.8922 29 1 2.8726 -3.6047 -0.8878 30 1 0.1348 -8.7245 -0.3427 31 1 0.3449 -7.3861 0.8117 32 1 -1.1803 -5.5000 0.8182 33 1 -3.4423 -4.6857 0.2856 34 1 -4.8266 -5.8846 -1.3604 35 1 -3.9452 -7.8923 -2.4811 36 1 -1.6794 -8.7007 -1.9559 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893128912.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:35 Heat of formation + Delta-G solvation = 153.575930 kcal Electronic energy + Delta-G solvation = -20150.383457 eV Core-core repulsion = 17058.633127 eV Total energy + Delta-G solvation = -3091.750330 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.60783 -40.16826 -37.20332 -36.14492 -35.14788 -33.37058 -32.46180 -31.81199 -30.59284 -27.87883 -26.50307 -25.04356 -23.59000 -23.33774 -22.51294 -21.60598 -19.63727 -18.54097 -18.04434 -17.69524 -17.07565 -16.50486 -16.39195 -16.07665 -15.98651 -15.09092 -14.45936 -14.37105 -14.26855 -14.17790 -13.65451 -13.58986 -13.24948 -13.04813 -12.75989 -12.61524 -12.51195 -12.36907 -11.97326 -11.89246 -11.60497 -11.45855 -11.37615 -10.58042 -10.18831 -9.85727 -9.81746 -8.60858 -8.18242 -6.31940 -0.18503 -0.04450 0.47473 0.62463 1.39685 1.45241 1.52766 1.88961 2.41978 2.59988 2.87465 3.13072 3.46997 3.57429 3.68392 3.90706 4.04206 4.11522 4.25304 4.42302 4.49411 4.59998 4.66622 4.77547 4.84831 5.03265 5.09221 5.12333 5.25349 5.47974 5.48646 5.59244 5.63836 5.67073 5.82651 6.06764 6.20442 6.26804 6.82421 6.98672 7.30243 7.37503 8.93229 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.016566 B = 0.005010 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.759150 B = 5587.305945 C = 6840.459040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.973 3.027 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.052 3.948 10 C 0.098 3.902 11 N -0.586 5.586 12 C 0.468 3.532 13 N -0.378 5.378 14 N 0.106 4.894 15 N -0.281 5.281 16 H 0.494 0.506 17 N -0.440 5.440 18 C 0.200 3.800 19 C -0.132 4.132 20 C -0.104 4.104 21 C -0.148 4.148 22 C -0.117 4.117 23 C -0.130 4.130 24 C -0.097 4.097 25 H 0.264 0.736 26 H -0.028 1.028 27 H -0.010 1.010 28 H 0.061 0.939 29 H 0.035 0.965 30 H 0.153 0.847 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.112 0.888 34 H 0.138 0.862 35 H 0.154 0.846 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.888 -24.302 -4.974 25.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.080 0.920 9 C 0.015 3.985 10 C -0.033 4.033 11 N -0.326 5.326 12 C 0.099 3.901 13 N -0.276 5.276 14 N 0.109 4.891 15 N -0.136 5.136 16 H 0.355 0.645 17 N -0.259 5.259 18 C 0.081 3.919 19 C -0.134 4.134 20 C -0.123 4.123 21 C -0.166 4.166 22 C -0.135 4.135 23 C -0.148 4.148 24 C -0.116 4.116 25 H 0.073 0.927 26 H -0.010 1.010 27 H 0.008 0.992 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.170 0.830 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.130 0.870 34 H 0.156 0.844 35 H 0.171 0.829 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.786 -23.797 -4.908 24.765 hybrid contribution -0.302 0.920 0.164 0.982 sum -5.088 -22.877 -4.744 23.912 Atomic orbital electron populations 1.70135 1.08024 1.27865 1.51408 1.26046 0.95815 1.03550 0.94349 0.85396 0.78212 0.77421 0.79372 1.19114 1.20493 1.18751 1.21583 0.93612 0.91998 1.51127 0.91951 1.18768 0.93834 0.92120 0.93821 1.21592 0.95236 0.87099 0.99342 1.72268 1.31806 1.05836 1.22695 1.21863 0.89732 0.87262 0.91264 1.77087 1.27295 1.16197 1.07049 1.77491 1.00686 0.94620 1.16297 1.48030 1.34428 1.20059 1.11114 0.64510 1.48814 1.44682 1.16516 1.15873 1.20851 0.80613 0.99153 0.91272 1.20289 0.96547 0.97048 0.99550 1.21294 0.95545 0.95820 0.99602 1.21379 0.95232 1.00320 0.99664 1.21513 1.00461 0.95860 0.95661 1.21519 0.96540 0.96552 1.00208 1.21412 0.94054 1.00191 0.95907 0.92736 1.00974 0.99206 0.92054 0.94656 0.82980 0.87714 0.87808 0.86950 0.84387 0.82876 0.82096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.82 13.29 21.45 0.28 -60.54 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.97 46.98 29.54 68.60 2.03 49.01 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.54 -34.16 9.11 25.60 0.23 -33.93 16 8 H 0.06 3.73 7.74 -2.91 -0.02 3.70 16 9 C 0.05 3.22 5.30 29.85 0.16 3.37 16 10 C 0.10 5.05 6.33 86.38 0.55 5.60 16 11 N -0.59 -26.53 10.60 -349.09 -3.70 -30.23 16 12 C 0.47 17.69 8.69 260.38 2.26 19.95 16 13 N -0.38 -14.27 11.41 -58.38 -0.67 -14.93 16 14 N 0.11 2.81 13.30 37.02 0.49 3.30 16 15 N -0.28 -4.82 8.31 37.02 0.31 -4.51 16 16 H 0.49 2.14 8.96 -340.26 -3.05 -0.91 16 17 N -0.44 -10.76 3.77 -352.87 -1.33 -12.09 16 18 C 0.20 3.54 6.69 85.63 0.57 4.11 16 19 C -0.13 -2.91 5.46 -19.87 -0.11 -3.02 16 20 C -0.10 -3.16 9.70 22.27 0.22 -2.94 16 21 C -0.15 -4.32 10.05 22.27 0.22 -4.09 16 22 C -0.12 -2.63 10.05 22.27 0.22 -2.41 16 23 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 24 C -0.10 -1.55 9.70 22.27 0.22 -1.33 16 25 H 0.26 16.00 8.31 -92.70 -0.77 15.23 16 26 H -0.03 -1.91 8.14 -2.39 -0.02 -1.93 16 27 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 28 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 29 H 0.03 1.84 7.07 -2.38 -0.02 1.83 16 30 H 0.15 0.89 8.09 -2.39 -0.02 0.87 16 31 H 0.10 2.15 8.08 -2.39 -0.02 2.13 16 32 H 0.10 3.78 8.06 -2.91 -0.02 3.75 16 33 H 0.11 3.40 8.06 -2.91 -0.02 3.37 16 34 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 35 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 36 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 Total: -1.00 -86.74 321.09 0.69 -86.05 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -1.95 Total: 0.20 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: 5.23 Total: -16.27 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -4.61 Total: -118.99 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -86.74 0.69 -86.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893128912.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.626 kcal (2) G-P(sol) polarization free energy of solvation -86.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds