Wall clock time and date at job start Mon Mar 30 2020 02:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 113.99754 * 2 1 4 4 C 1.50701 * 109.47199 * 179.97438 * 3 2 1 5 5 C 1.35360 * 126.74971 * 0.24325 * 4 3 2 6 6 N 1.35312 * 106.17212 * 180.12557 * 5 4 3 7 7 C 1.46495 * 125.86448 * 179.90389 * 6 5 4 8 8 C 1.50706 * 109.47193 * 124.71668 * 7 6 5 9 9 C 1.38632 * 119.74902 * 89.99972 * 8 7 6 10 10 C 1.37610 * 120.24865 * 179.97438 * 9 8 7 11 11 C 1.40716 * 119.74899 * 0.27687 * 10 9 8 12 12 C 1.41392 * 120.24802 * 179.69783 * 11 10 9 13 13 H 1.08007 * 119.99541 * 150.23496 * 12 11 10 14 14 C 1.39945 * 120.00071 * 330.23912 * 12 11 10 15 15 N 1.30822 * 119.99676 * 161.71500 * 14 12 11 16 16 Si 1.86797 * 120.00031 * 341.71640 * 14 12 11 17 17 H 1.48495 * 109.47222 * 95.41135 * 16 14 12 18 18 H 1.48503 * 109.46947 * 215.41188 * 16 14 12 19 19 H 1.48504 * 109.47122 * 335.41193 * 16 14 12 20 20 C 1.40722 * 119.50521 * 359.47220 * 11 10 9 21 21 C 1.37614 * 119.74522 * 0.50698 * 20 11 10 22 22 N 1.28718 * 108.26338 * 359.64441 * 6 5 4 23 23 N 1.28622 * 110.18035 * 0.22490 * 22 6 5 24 24 H 1.09002 * 109.46725 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47346 * 299.99917 * 1 2 3 26 26 H 1.09002 * 109.46831 * 60.00559 * 1 2 3 27 27 H 1.08997 * 109.47213 * 59.99982 * 3 2 1 28 28 H 1.09000 * 109.47244 * 299.99571 * 3 2 1 29 29 H 1.07996 * 126.90867 * 0.02562 * 5 4 3 30 30 H 1.09001 * 109.47639 * 4.71736 * 7 6 5 31 31 H 1.09000 * 109.47393 * 244.71300 * 7 6 5 32 32 H 1.08004 * 119.87387 * 359.95713 * 9 8 7 33 33 H 1.08005 * 120.13128 * 179.97438 * 10 9 8 34 34 H 0.97002 * 119.99654 * 180.02562 * 15 14 12 35 35 H 1.07997 * 120.12679 * 180.25842 * 20 11 10 36 36 H 1.08002 * 119.87887 * 179.74692 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2343 0.0414 -0.0035 6 7 5.5346 0.4156 0.0019 7 6 6.6877 -0.4880 0.0021 8 6 7.5858 -0.1568 -1.1619 9 6 8.6039 0.7707 -1.0030 10 6 9.4304 1.0805 -2.0588 11 6 9.2353 0.4563 -3.3047 12 6 10.0742 0.7715 -4.3984 13 1 10.2739 0.0293 -5.1572 14 6 10.6458 2.0450 -4.4976 15 7 11.6787 2.2394 -5.2765 16 14 9.9340 3.4671 -3.5177 17 1 10.6917 3.6233 -2.2502 18 1 10.0369 4.7169 -4.3132 19 1 8.5073 3.1918 -3.2108 20 6 8.2021 -0.4875 -3.4529 21 6 7.3880 -0.7822 -2.3832 22 7 5.5843 1.7018 0.0011 23 7 4.3951 2.1918 0.0004 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8496 -0.9677 -0.0082 30 1 6.3423 -1.5180 -0.0872 31 1 7.2416 -0.3700 0.9334 32 1 8.7488 1.2521 -0.0471 33 1 10.2227 1.8037 -1.9330 34 1 12.0752 3.1221 -5.3449 35 1 8.0460 -0.9757 -4.4035 36 1 6.5918 -1.5032 -2.4956 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900545054.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:08 Heat of formation + Delta-G solvation = 68.894591 kcal Electronic energy + Delta-G solvation = -19904.082670 eV Core-core repulsion = 16776.367530 eV Total energy + Delta-G solvation = -3127.715140 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.91066 -38.17125 -37.95750 -34.87763 -33.49582 -31.63629 -30.94951 -29.84024 -27.87666 -27.42086 -25.64794 -24.23949 -21.86121 -21.65288 -21.00110 -20.07001 -17.55147 -17.14131 -16.49321 -16.37657 -15.86137 -15.54445 -15.26246 -14.45814 -14.27955 -14.12230 -13.90888 -13.09725 -12.87290 -12.79085 -12.44635 -12.16644 -11.99922 -11.66683 -11.63574 -11.23819 -10.90125 -10.86092 -10.58738 -10.34610 -10.19041 -10.01323 -9.69530 -9.54763 -9.22872 -8.83930 -7.83731 -7.73567 -7.08600 -4.63380 1.94322 2.19975 2.61469 2.75637 2.94986 3.12458 3.21180 3.33374 3.39124 3.93468 4.38141 4.61658 4.94414 5.00754 5.07669 5.14832 5.21439 5.26886 5.36341 5.39440 5.41036 5.57640 5.59054 5.88595 6.01623 6.07846 6.30963 6.46029 6.71089 6.75654 6.89649 6.96520 7.03724 7.29704 7.41291 7.60548 7.75317 7.98781 8.21648 8.51687 8.66322 8.86144 9.92268 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028213 B = 0.004110 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.211479 B = 6811.361429 C = 7051.553517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.157 3.843 4 C -0.043 4.043 5 C -0.033 4.033 6 N -0.275 5.275 7 C 0.175 3.825 8 C -0.260 4.260 9 C -0.035 4.035 10 C -0.243 4.243 11 C 0.102 3.898 12 C -0.438 4.438 13 H 0.093 0.907 14 C 0.084 3.916 15 N -0.798 5.798 16 Si 0.911 3.089 17 H -0.268 1.268 18 H -0.289 1.289 19 H -0.241 1.241 20 C -0.214 4.214 21 C -0.057 4.057 22 N -0.065 5.065 23 N -0.278 5.278 24 H 0.087 0.913 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.188 0.812 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.288 0.712 35 H 0.102 0.898 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.226 -4.357 9.630 18.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.308 6.308 3 C 0.079 3.921 4 C -0.182 4.182 5 C -0.184 4.184 6 N -0.068 5.068 7 C 0.057 3.943 8 C -0.262 4.262 9 C -0.054 4.054 10 C -0.262 4.262 11 C 0.099 3.901 12 C -0.465 4.465 13 H 0.111 0.889 14 C -0.136 4.136 15 N -0.421 5.421 16 Si 0.737 3.263 17 H -0.194 1.194 18 H -0.216 1.216 19 H -0.164 1.164 20 C -0.233 4.233 21 C -0.076 4.076 22 N -0.044 5.044 23 N -0.146 5.146 24 H 0.106 0.894 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.205 0.795 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.120 0.880 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.942 -3.193 9.481 17.160 hybrid contribution -0.895 -0.169 0.197 0.932 sum -14.837 -3.362 9.678 18.031 Atomic orbital electron populations 1.22740 0.80382 1.02896 1.00196 1.87797 1.19996 1.27496 1.95547 1.20194 0.86140 0.84490 1.01268 1.21468 0.96117 0.90256 1.10341 1.23292 0.83568 1.02003 1.09575 1.48148 1.07509 1.06647 1.44515 1.20850 0.83055 0.90546 0.99818 1.18729 1.03309 1.09489 0.94711 1.20419 0.93365 0.94227 0.97355 1.21009 1.03833 1.07563 0.93771 1.17789 0.89781 0.90423 0.92125 1.19615 1.21234 0.98642 1.07048 0.88913 1.26229 0.92281 1.01070 0.94042 1.69689 1.15493 1.25434 1.31506 0.86297 0.82892 0.78316 0.78781 1.19367 1.21599 1.16400 1.20961 0.98890 1.05812 0.97628 1.20451 0.97331 0.97282 0.92537 1.78321 1.16488 0.91325 1.18300 1.74999 0.94917 1.26603 1.18084 0.89436 0.93912 0.93826 0.91575 0.91466 0.79533 0.88265 0.88917 0.88527 0.87971 0.90130 0.87997 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.29 10.09 -35.23 -0.36 -4.64 16 3 C 0.16 1.86 6.56 36.01 0.24 2.09 16 4 C -0.04 -0.68 7.22 -82.77 -0.60 -1.28 16 5 C -0.03 -0.49 10.91 -17.04 -0.19 -0.67 16 6 N -0.27 -4.62 3.43 -62.44 -0.21 -4.84 16 7 C 0.18 2.62 6.57 -5.19 -0.03 2.59 16 8 C -0.26 -5.02 5.27 -104.33 -0.55 -5.57 16 9 C -0.03 -0.74 9.67 -39.66 -0.38 -1.12 16 10 C -0.24 -5.79 7.18 -38.88 -0.28 -6.07 16 11 C 0.10 2.55 5.11 -106.82 -0.55 2.01 16 12 C -0.44 -11.65 9.57 -37.74 -0.36 -12.01 16 13 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 14 C 0.08 2.19 5.40 -17.34 -0.09 2.10 16 15 N -0.80 -20.94 13.93 55.55 0.77 -20.17 16 16 Si 0.91 21.19 24.52 -169.99 -4.17 17.03 16 17 H -0.27 -6.02 6.71 56.52 0.38 -5.64 16 18 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.24 -5.96 6.86 56.52 0.39 -5.57 16 20 C -0.21 -4.85 9.80 -38.87 -0.38 -5.23 16 21 C -0.06 -1.14 9.67 -39.66 -0.38 -1.53 16 22 N -0.06 -1.28 12.92 60.35 0.78 -0.50 16 23 N -0.28 -5.28 12.41 33.29 0.41 -4.87 16 24 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.19 2.15 7.93 -52.49 -0.42 1.74 16 30 H 0.10 1.16 8.01 -51.93 -0.42 0.74 16 31 H 0.09 1.23 8.08 -51.93 -0.42 0.81 16 32 H 0.10 1.87 8.06 -52.48 -0.42 1.44 16 33 H 0.10 2.45 4.73 -52.48 -0.25 2.20 16 34 H 0.29 6.84 8.30 -40.82 -0.34 6.50 16 35 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 36 H 0.09 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 311.89 15.07 4.70 4.70 Total: -1.00 -30.07 311.89 -4.99 -35.07 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -4.48 Total: 1.56 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: -2.45 Total: -23.33 kcal Atomic # 7 Polarization: -32.13 SS G_CDS: 1.75 Total: -30.38 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.36 Total: -4.64 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.17 Total: 17.03 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.07 -4.99 -35.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900545054.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.961 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds