Wall clock time and date at job start Mon Mar 30 2020 02:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 113.99754 * 2 1 4 4 C 1.50701 * 109.47199 * 179.97438 * 3 2 1 5 5 C 1.35360 * 126.74971 * 0.24325 * 4 3 2 6 6 N 1.35312 * 106.17212 * 180.12557 * 5 4 3 7 7 C 1.46495 * 125.86448 * 179.90389 * 6 5 4 8 8 C 1.50706 * 109.47193 * 124.71668 * 7 6 5 9 9 C 1.38632 * 119.74902 * 89.99972 * 8 7 6 10 10 C 1.37610 * 120.24865 * 179.97438 * 9 8 7 11 11 C 1.40716 * 119.74899 * 0.27687 * 10 9 8 12 12 C 1.41392 * 120.24802 * 179.69783 * 11 10 9 13 13 H 1.08007 * 119.99541 * 150.23496 * 12 11 10 14 14 C 1.39945 * 120.00071 * 330.23912 * 12 11 10 15 15 N 1.30822 * 119.99676 * 161.71500 * 14 12 11 16 16 Si 1.86797 * 120.00031 * 341.71640 * 14 12 11 17 17 H 1.48495 * 109.47222 * 95.41135 * 16 14 12 18 18 H 1.48503 * 109.46947 * 215.41188 * 16 14 12 19 19 H 1.48504 * 109.47122 * 335.41193 * 16 14 12 20 20 C 1.40722 * 119.50521 * 359.47220 * 11 10 9 21 21 C 1.37614 * 119.74522 * 0.50698 * 20 11 10 22 22 N 1.28718 * 108.26338 * 359.64441 * 6 5 4 23 23 N 1.28622 * 110.18035 * 0.22490 * 22 6 5 24 24 H 1.09002 * 109.46725 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47346 * 299.99917 * 1 2 3 26 26 H 1.09002 * 109.46831 * 60.00559 * 1 2 3 27 27 H 1.08997 * 109.47213 * 59.99982 * 3 2 1 28 28 H 1.09000 * 109.47244 * 299.99571 * 3 2 1 29 29 H 1.07996 * 126.90867 * 0.02562 * 5 4 3 30 30 H 1.09001 * 109.47639 * 4.71736 * 7 6 5 31 31 H 1.09000 * 109.47393 * 244.71300 * 7 6 5 32 32 H 1.08004 * 119.87387 * 359.95713 * 9 8 7 33 33 H 1.08005 * 120.13128 * 179.97438 * 10 9 8 34 34 H 0.97002 * 119.99654 * 180.02562 * 15 14 12 35 35 H 1.07997 * 120.12679 * 180.25842 * 20 11 10 36 36 H 1.08002 * 119.87887 * 179.74692 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2343 0.0414 -0.0035 6 7 5.5346 0.4156 0.0019 7 6 6.6877 -0.4880 0.0021 8 6 7.5858 -0.1568 -1.1619 9 6 8.6039 0.7707 -1.0030 10 6 9.4304 1.0805 -2.0588 11 6 9.2353 0.4563 -3.3047 12 6 10.0742 0.7715 -4.3984 13 1 10.2739 0.0293 -5.1572 14 6 10.6458 2.0450 -4.4976 15 7 11.6787 2.2394 -5.2765 16 14 9.9340 3.4671 -3.5177 17 1 10.6917 3.6233 -2.2502 18 1 10.0369 4.7169 -4.3132 19 1 8.5073 3.1918 -3.2108 20 6 8.2021 -0.4875 -3.4529 21 6 7.3880 -0.7822 -2.3832 22 7 5.5843 1.7018 0.0011 23 7 4.3951 2.1918 0.0004 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8496 -0.9677 -0.0082 30 1 6.3423 -1.5180 -0.0872 31 1 7.2416 -0.3700 0.9334 32 1 8.7488 1.2521 -0.0471 33 1 10.2227 1.8037 -1.9330 34 1 12.0752 3.1221 -5.3449 35 1 8.0460 -0.9757 -4.4035 36 1 6.5918 -1.5032 -2.4956 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900545054.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:07 Heat of formation + Delta-G solvation = 48.882980 kcal Electronic energy + Delta-G solvation = -19904.950438 eV Core-core repulsion = 16776.367530 eV Total energy + Delta-G solvation = -3128.582908 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.15896 -39.81969 -38.78637 -36.38403 -35.19340 -32.82718 -32.53067 -31.57839 -29.27206 -28.37832 -26.45864 -25.88179 -23.53771 -22.97677 -22.40164 -21.60007 -19.43520 -18.34311 -17.75134 -17.38205 -17.12425 -16.65852 -16.20143 -15.91847 -15.78719 -15.66908 -15.44563 -14.78812 -14.18814 -13.99192 -13.84272 -13.61813 -13.29849 -13.24089 -12.75124 -12.64440 -12.47916 -12.31950 -12.13660 -11.90530 -11.72573 -11.54062 -11.07348 -11.00296 -10.73367 -9.98837 -9.58193 -9.52337 -9.00188 -6.59363 0.49327 0.78956 0.83511 1.19605 1.31700 1.41798 1.52430 1.73731 2.04954 2.53974 2.59406 3.44899 3.55565 3.90483 4.00170 4.03562 4.22887 4.29000 4.33205 4.45988 4.47022 4.54149 4.64577 4.67105 4.68182 4.85596 4.95534 4.97365 5.01867 5.16775 5.23844 5.52535 5.65222 5.75570 5.83691 5.90707 6.17441 6.18732 6.33346 6.65165 6.75705 7.58578 8.07844 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028213 B = 0.004110 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.211479 B = 6811.361429 C = 7051.553517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.404 6.404 3 C 0.161 3.839 4 C -0.053 4.053 5 C -0.019 4.019 6 N -0.276 5.276 7 C 0.173 3.827 8 C -0.233 4.233 9 C -0.046 4.046 10 C -0.258 4.258 11 C 0.082 3.918 12 C -0.481 4.481 13 H 0.063 0.937 14 C 0.055 3.945 15 N -0.840 5.840 16 Si 0.961 3.039 17 H -0.257 1.257 18 H -0.275 1.275 19 H -0.265 1.265 20 C -0.228 4.228 21 C -0.055 4.055 22 N -0.114 5.114 23 N -0.307 5.307 24 H 0.103 0.897 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.225 0.775 30 H 0.147 0.853 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.296 0.704 35 H 0.104 0.896 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.371 -5.793 12.195 22.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.323 6.323 3 C 0.083 3.917 4 C -0.192 4.192 5 C -0.171 4.171 6 N -0.070 5.070 7 C 0.055 3.945 8 C -0.235 4.235 9 C -0.065 4.065 10 C -0.277 4.277 11 C 0.079 3.921 12 C -0.510 4.510 13 H 0.081 0.919 14 C -0.161 4.161 15 N -0.466 5.466 16 Si 0.785 3.215 17 H -0.183 1.183 18 H -0.202 1.202 19 H -0.190 1.190 20 C -0.248 4.248 21 C -0.073 4.073 22 N -0.093 5.093 23 N -0.174 5.174 24 H 0.121 0.879 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.241 0.759 30 H 0.164 0.836 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.123 0.877 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.078 -4.618 12.050 21.405 hybrid contribution -0.240 0.063 -0.382 0.455 sum -17.318 -4.555 11.668 21.373 Atomic orbital electron populations 1.22970 0.78430 1.04280 1.01142 1.87750 1.22028 1.26789 1.95715 1.20196 0.84070 0.85288 1.02137 1.22118 0.97738 0.89915 1.09458 1.23882 0.82427 1.03324 1.07455 1.48085 1.08542 1.06036 1.44329 1.21125 0.82426 0.92371 0.98561 1.19275 1.01995 1.06257 0.95951 1.20772 0.93501 0.94713 0.97467 1.21117 1.04528 1.07806 0.94284 1.17952 0.90464 0.91618 0.92064 1.19570 1.24435 0.99018 1.07962 0.91926 1.26699 0.92392 1.02246 0.94770 1.69704 1.16857 1.26329 1.33702 0.85558 0.80641 0.76862 0.78429 1.18251 1.20152 1.18985 1.21204 0.98959 1.05517 0.99095 1.20887 0.97269 0.97488 0.91686 1.78294 1.17237 0.92818 1.20906 1.74932 0.95501 1.28186 1.18820 0.87875 0.92723 0.93159 0.90266 0.91020 0.75872 0.83566 0.86705 0.86468 0.88816 0.89361 0.87744 0.84785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.54 16 2 O -0.40 -7.32 10.09 -148.98 -1.50 -8.83 16 3 C 0.16 3.30 6.56 71.24 0.47 3.77 16 4 C -0.05 -1.50 7.22 41.60 0.30 -1.20 16 5 C -0.02 -0.48 10.91 83.49 0.91 0.43 16 6 N -0.28 -8.14 3.43 -351.46 -1.21 -9.34 16 7 C 0.17 4.23 6.57 85.64 0.56 4.79 16 8 C -0.23 -8.13 5.27 -19.67 -0.10 -8.24 16 9 C -0.05 -1.86 9.67 22.22 0.21 -1.65 16 10 C -0.26 -12.37 7.18 22.73 0.16 -12.21 16 11 C 0.08 4.19 5.11 -21.29 -0.11 4.08 16 12 C -0.48 -27.14 9.57 23.46 0.22 -26.91 16 13 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 14 C 0.05 3.00 5.40 85.26 0.46 3.46 16 15 N -0.84 -46.39 13.93 21.83 0.30 -46.08 16 16 Si 0.96 45.18 24.52 68.60 1.68 46.86 16 17 H -0.26 -11.46 6.71 99.48 0.67 -10.79 16 18 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.27 -13.36 6.86 99.48 0.68 -12.67 16 20 C -0.23 -10.28 9.80 22.73 0.22 -10.05 16 21 C -0.05 -2.01 9.67 22.22 0.21 -1.80 16 22 N -0.11 -4.25 12.92 37.02 0.48 -3.77 16 23 N -0.31 -11.10 12.41 -48.59 -0.60 -11.70 16 24 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.22 3.74 7.93 -2.91 -0.02 3.71 16 30 H 0.15 2.30 8.01 -2.39 -0.02 2.28 16 31 H 0.11 2.40 8.08 -2.39 -0.02 2.38 16 32 H 0.12 4.24 8.06 -2.91 -0.02 4.21 16 33 H 0.09 4.57 4.73 -2.91 -0.01 4.56 16 34 H 0.30 14.67 8.30 -92.71 -0.77 13.90 16 35 H 0.10 4.53 8.06 -2.91 -0.02 4.51 16 36 H 0.13 3.84 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -69.12 311.89 4.95 -64.17 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 1.02 Total: 12.66 kcal Atomic # 6 Polarization: -48.75 SS G_CDS: 4.78 Total: -43.97 kcal Atomic # 7 Polarization: -69.87 SS G_CDS: -1.03 Total: -70.89 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -1.50 Total: -8.83 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.68 Total: 46.86 kcal Total: -69.12 4.95 -64.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900545054.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.054 kcal (2) G-P(sol) polarization free energy of solvation -69.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds