Wall clock time and date at job start Mon Mar 30 2020 01:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47151 * 2 1 4 4 C 1.50701 * 109.47184 * 120.00433 * 2 1 3 5 5 H 1.07996 * 120.00394 * 119.99990 * 4 2 1 6 6 C 1.37875 * 119.99731 * 299.99810 * 4 2 1 7 7 N 1.31523 * 120.00251 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99948 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47001 * 60.00321 * 8 6 4 10 10 H 1.48506 * 109.47231 * 179.97438 * 8 6 4 11 11 H 1.48491 * 109.47399 * 299.99694 * 8 6 4 12 12 N 1.46497 * 109.46620 * 240.00149 * 2 1 3 13 13 C 1.46504 * 120.00292 * 299.99444 * 12 2 1 14 14 C 1.34774 * 119.99697 * 120.00377 * 12 2 1 15 15 O 1.21640 * 120.00378 * 357.27172 * 14 12 2 16 16 C 1.47284 * 120.00031 * 177.27338 * 14 12 2 17 17 C 1.38431 * 120.03042 * 186.89550 * 16 14 12 18 18 C 1.40663 * 118.27203 * 179.97438 * 17 16 14 19 19 C 1.38256 * 133.40155 * 180.02562 * 18 17 16 20 20 C 1.39680 * 106.99349 * 179.97438 * 19 18 17 21 21 C 1.35639 * 108.08410 * 359.97438 * 20 19 18 22 22 N 1.35916 * 109.06098 * 0.02562 * 21 20 19 23 23 C 1.36903 * 132.42666 * 180.02562 * 22 21 20 24 24 N 1.29794 * 121.47928 * 179.75652 * 23 22 21 25 25 H 1.09006 * 109.47177 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47317 * 59.99962 * 1 2 3 27 27 H 1.09002 * 109.47024 * 299.99519 * 1 2 3 28 28 H 0.97002 * 119.99910 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.46486 * 96.11962 * 13 12 2 30 30 H 1.08996 * 109.47285 * 216.11467 * 13 12 2 31 31 H 1.08998 * 109.47052 * 336.11930 * 13 12 2 32 32 H 1.08005 * 120.86685 * 359.97438 * 17 16 14 33 33 H 1.07999 * 126.50305 * 359.97270 * 19 18 17 34 34 H 1.08007 * 125.95766 * 179.97438 * 20 19 18 35 35 H 1.07999 * 125.47253 * 180.02562 * 21 20 19 36 36 H 1.08001 * 119.26008 * 359.93887 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.8075 -1.1190 4.0076 10 1 1.8280 -0.4194 5.2204 11 1 1.8281 -2.5199 4.0081 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7931 -0.0356 -2.0833 15 8 3.0462 1.1424 -1.9165 16 6 3.3335 -0.7461 -3.2548 17 6 4.2425 -0.1171 -4.0881 18 6 4.7351 -0.8303 -5.1959 19 6 5.6279 -0.5199 -6.2049 20 6 5.7201 -1.6442 -7.0286 21 6 4.9037 -2.6032 -6.5249 22 7 4.2944 -2.1256 -5.4078 23 6 3.3937 -2.6798 -4.5384 24 7 2.9447 -2.0193 -3.5153 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 0.7082 1.1607 3.4845 29 1 0.7997 -2.1451 -2.0896 30 1 2.5064 -2.6089 -1.8896 31 1 1.4237 -2.5691 -0.4774 32 1 4.5651 0.8950 -3.8927 33 1 6.1542 0.4146 -6.3321 34 1 6.3344 -1.7343 -7.9124 35 1 4.7607 -3.5881 -6.9442 36 1 3.0513 -3.6903 -4.7060 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931939380.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:51 Heat of formation + Delta-G solvation = 72.926054 kcal Electronic energy + Delta-G solvation = -20575.977284 eV Core-core repulsion = 17448.436961 eV Total energy + Delta-G solvation = -3127.540322 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.44384 -39.29579 -37.25762 -35.38258 -33.15953 -32.76462 -31.06677 -29.53790 -28.16098 -25.94554 -25.20116 -24.51910 -23.39084 -21.45597 -20.85435 -19.16798 -18.14847 -16.95094 -16.32302 -16.06754 -15.86039 -15.39035 -15.11174 -14.44191 -14.39058 -14.27730 -13.32808 -12.80110 -12.64521 -12.59046 -12.45019 -12.25765 -12.19809 -11.57229 -11.52901 -11.04629 -10.82530 -10.69379 -10.57934 -10.23938 -10.14424 -9.83321 -9.15653 -9.08013 -8.97929 -8.40663 -7.71783 -7.39317 -6.05116 -4.13093 0.46324 1.12390 2.44734 2.72790 3.04471 3.29765 3.34478 3.36524 3.75003 3.97302 4.08183 4.40588 4.49026 4.66565 4.77733 5.05582 5.25157 5.27663 5.36075 5.52883 5.67835 5.96439 6.08389 6.25082 6.35757 6.45885 6.57880 6.69739 6.80391 6.89324 7.03461 7.09928 7.43534 7.54184 7.64781 7.73840 8.04122 8.21501 8.54542 8.82470 9.02493 9.52904 11.00220 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.034294 B = 0.004247 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.274003 B = 6591.891536 C = 6697.893872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.255 3.745 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.569 5.569 13 C 0.082 3.918 14 C 0.558 3.442 15 O -0.550 6.550 16 C 0.028 3.972 17 C -0.053 4.053 18 C 0.035 3.965 19 C -0.182 4.182 20 C -0.147 4.147 21 C -0.039 4.039 22 N -0.386 5.386 23 C 0.291 3.709 24 N -0.450 5.450 25 H 0.030 0.970 26 H 0.011 0.989 27 H 0.094 0.906 28 H 0.264 0.736 29 H 0.040 0.960 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.162 0.838 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.173 0.827 36 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.805 -8.787 -17.536 20.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.155 3.845 3 H 0.081 0.919 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.297 5.297 13 C -0.062 4.062 14 C 0.344 3.656 15 O -0.430 6.430 16 C -0.090 4.090 17 C -0.076 4.076 18 C -0.070 4.070 19 C -0.208 4.208 20 C -0.170 4.170 21 C -0.170 4.170 22 N -0.059 5.059 23 C 0.010 3.990 24 N -0.163 5.163 25 H 0.049 0.951 26 H 0.030 0.970 27 H 0.112 0.888 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.180 0.820 33 H 0.167 0.833 34 H 0.167 0.833 35 H 0.191 0.809 36 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 5.028 -8.416 -16.413 19.118 hybrid contribution 0.788 -0.335 0.299 0.907 sum 5.816 -8.751 -16.114 19.237 Atomic orbital electron populations 1.22070 0.97959 0.99505 1.00786 1.19030 0.91104 0.94534 0.79787 0.91871 1.21276 1.31904 1.13035 0.90209 0.92244 1.24889 0.94938 0.94987 0.98925 1.69878 1.36271 1.22597 1.23859 0.86535 0.79224 0.79575 0.81926 1.20263 1.21148 1.20209 1.48144 1.46721 1.12398 1.22437 1.22122 1.00794 0.82412 1.00849 1.17436 0.80159 0.86175 0.81844 1.90770 1.61099 1.15153 1.76004 1.21320 0.99061 0.90239 0.98351 1.21676 0.94268 1.01132 0.90474 1.18947 1.02744 0.85526 0.99777 1.21106 1.02868 1.00771 0.96043 1.21004 1.01491 0.93204 1.01266 1.21908 1.02568 1.01713 0.90787 1.43225 1.29841 1.12903 1.19897 1.25122 0.88492 0.99867 0.85512 1.68928 1.24510 1.08377 1.14462 0.95066 0.97016 0.88769 0.92619 0.94185 0.89219 0.91313 0.81999 0.83277 0.83332 0.80933 0.77839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 8.97 37.16 0.33 -3.27 16 2 C 0.26 6.78 2.63 -69.08 -0.18 6.60 16 3 H 0.06 1.92 6.90 -51.93 -0.36 1.56 16 4 C -0.53 -14.57 7.95 -34.44 -0.27 -14.85 16 5 H 0.06 1.63 7.44 -52.49 -0.39 1.24 16 6 C 0.06 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -25.46 11.32 55.43 0.63 -24.84 16 8 Si 0.90 21.33 29.54 -169.99 -5.02 16.30 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.57 -13.09 2.75 -176.58 -0.49 -13.58 16 13 C 0.08 1.55 8.27 59.85 0.50 2.04 16 14 C 0.56 12.59 7.63 -12.58 -0.10 12.49 16 15 O -0.55 -14.07 15.69 5.24 0.08 -13.99 16 16 C 0.03 0.51 6.65 -82.43 -0.55 -0.04 16 17 C -0.05 -0.84 9.72 -38.60 -0.38 -1.22 16 18 C 0.04 0.48 6.78 -83.95 -0.57 -0.09 16 19 C -0.18 -2.03 10.98 -39.04 -0.43 -2.46 16 20 C -0.15 -1.32 10.80 -39.97 -0.43 -1.75 16 21 C -0.04 -0.34 11.61 -16.67 -0.19 -0.53 16 22 N -0.39 -4.42 2.95 -62.17 -0.18 -4.61 16 23 C 0.29 3.22 12.16 -89.23 -1.09 2.14 16 24 N -0.45 -6.73 6.04 -10.42 -0.06 -6.79 16 25 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 26 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.09 1.54 5.15 -53.40 -0.27 1.26 16 31 H 0.07 1.35 7.12 -51.93 -0.37 0.98 16 32 H 0.16 2.50 7.67 -52.48 -0.40 2.09 16 33 H 0.15 1.39 8.06 -52.49 -0.42 0.96 16 34 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 35 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.21 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 303.90 15.07 4.58 4.58 Total: -1.00 -33.18 303.90 -8.09 -41.28 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -4.18 Total: 0.87 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -3.45 Total: 0.77 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: -0.11 Total: -49.81 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.08 Total: -13.99 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.18 -8.09 -41.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931939380.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.203 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds