Wall clock time and date at job start Mon Mar 30 2020 01:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47151 * 2 1 4 4 C 1.50701 * 109.47184 * 120.00433 * 2 1 3 5 5 H 1.07996 * 120.00394 * 119.99990 * 4 2 1 6 6 C 1.37875 * 119.99731 * 299.99810 * 4 2 1 7 7 N 1.31523 * 120.00251 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99948 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47001 * 60.00321 * 8 6 4 10 10 H 1.48506 * 109.47231 * 179.97438 * 8 6 4 11 11 H 1.48491 * 109.47399 * 299.99694 * 8 6 4 12 12 N 1.46497 * 109.46620 * 240.00149 * 2 1 3 13 13 C 1.46504 * 120.00292 * 299.99444 * 12 2 1 14 14 C 1.34774 * 119.99697 * 120.00377 * 12 2 1 15 15 O 1.21640 * 120.00378 * 357.27172 * 14 12 2 16 16 C 1.47284 * 120.00031 * 177.27338 * 14 12 2 17 17 C 1.38431 * 120.03042 * 186.89550 * 16 14 12 18 18 C 1.40663 * 118.27203 * 179.97438 * 17 16 14 19 19 C 1.38256 * 133.40155 * 180.02562 * 18 17 16 20 20 C 1.39680 * 106.99349 * 179.97438 * 19 18 17 21 21 C 1.35639 * 108.08410 * 359.97438 * 20 19 18 22 22 N 1.35916 * 109.06098 * 0.02562 * 21 20 19 23 23 C 1.36903 * 132.42666 * 180.02562 * 22 21 20 24 24 N 1.29794 * 121.47928 * 179.75652 * 23 22 21 25 25 H 1.09006 * 109.47177 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47317 * 59.99962 * 1 2 3 27 27 H 1.09002 * 109.47024 * 299.99519 * 1 2 3 28 28 H 0.97002 * 119.99910 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.46486 * 96.11962 * 13 12 2 30 30 H 1.08996 * 109.47285 * 216.11467 * 13 12 2 31 31 H 1.08998 * 109.47052 * 336.11930 * 13 12 2 32 32 H 1.08005 * 120.86685 * 359.97438 * 17 16 14 33 33 H 1.07999 * 126.50305 * 359.97270 * 19 18 17 34 34 H 1.08007 * 125.95766 * 179.97438 * 20 19 18 35 35 H 1.07999 * 125.47253 * 180.02562 * 21 20 19 36 36 H 1.08001 * 119.26008 * 359.93887 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.8075 -1.1190 4.0076 10 1 1.8280 -0.4194 5.2204 11 1 1.8281 -2.5199 4.0081 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7931 -0.0356 -2.0833 15 8 3.0462 1.1424 -1.9165 16 6 3.3335 -0.7461 -3.2548 17 6 4.2425 -0.1171 -4.0881 18 6 4.7351 -0.8303 -5.1959 19 6 5.6279 -0.5199 -6.2049 20 6 5.7201 -1.6442 -7.0286 21 6 4.9037 -2.6032 -6.5249 22 7 4.2944 -2.1256 -5.4078 23 6 3.3937 -2.6798 -4.5384 24 7 2.9447 -2.0193 -3.5153 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 0.7082 1.1607 3.4845 29 1 0.7997 -2.1451 -2.0896 30 1 2.5064 -2.6089 -1.8896 31 1 1.4237 -2.5691 -0.4774 32 1 4.5651 0.8950 -3.8927 33 1 6.1542 0.4146 -6.3321 34 1 6.3344 -1.7343 -7.9124 35 1 4.7607 -3.5881 -6.9442 36 1 3.0513 -3.6903 -4.7060 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931939380.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:51 Heat of formation + Delta-G solvation = 53.703392 kcal Electronic energy + Delta-G solvation = -20576.810841 eV Core-core repulsion = 17448.436961 eV Total energy + Delta-G solvation = -3128.373880 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.32117 -40.87842 -38.38812 -37.25729 -34.80895 -34.11635 -32.11282 -31.31751 -29.28739 -27.54082 -27.33750 -25.57495 -24.56775 -22.74263 -21.97615 -20.60325 -19.34593 -18.56476 -17.99230 -17.50570 -16.87890 -16.70573 -16.67111 -15.98838 -15.94488 -15.24147 -14.95665 -14.40693 -13.97552 -13.82721 -13.66645 -13.47024 -13.36352 -13.28186 -13.01055 -12.84617 -12.73350 -12.68726 -12.23319 -12.13490 -11.66395 -11.38297 -11.16820 -10.58685 -10.44358 -9.87538 -9.39401 -8.50203 -8.16540 -6.34176 -0.61684 0.22733 1.40007 1.43180 1.50767 1.64814 1.72169 1.99890 2.21280 2.43874 2.66786 3.00545 3.10596 3.54170 3.64767 3.93252 4.08732 4.31742 4.49558 4.61624 4.64925 4.71161 4.75834 4.83082 4.88967 5.03680 5.17071 5.19936 5.33132 5.42639 5.53088 5.58746 5.64852 5.78500 5.98945 6.12214 6.26161 6.60109 6.71648 6.78936 7.21911 7.40154 8.87907 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.034294 B = 0.004247 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.274003 B = 6591.891536 C = 6697.893872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.258 3.742 3 H 0.010 0.990 4 C -0.542 4.542 5 H 0.059 0.941 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.969 3.031 9 H -0.277 1.277 10 H -0.280 1.280 11 H -0.261 1.261 12 N -0.580 5.580 13 C 0.088 3.912 14 C 0.548 3.452 15 O -0.602 6.602 16 C -0.008 4.008 17 C -0.046 4.046 18 C -0.014 4.014 19 C -0.168 4.168 20 C -0.156 4.156 21 C -0.002 4.002 22 N -0.398 5.398 23 C 0.316 3.684 24 N -0.480 5.480 25 H 0.046 0.954 26 H 0.016 0.984 27 H 0.072 0.928 28 H 0.266 0.734 29 H 0.054 0.946 30 H 0.113 0.887 31 H 0.056 0.944 32 H 0.146 0.854 33 H 0.160 0.840 34 H 0.183 0.817 35 H 0.223 0.777 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.018 -12.517 -20.187 24.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.157 3.843 3 H 0.028 0.972 4 C -0.580 4.580 5 H 0.077 0.923 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.794 3.206 9 H -0.203 1.203 10 H -0.205 1.205 11 H -0.186 1.186 12 N -0.307 5.307 13 C -0.054 4.054 14 C 0.337 3.663 15 O -0.486 6.486 16 C -0.123 4.123 17 C -0.069 4.069 18 C -0.118 4.118 19 C -0.194 4.194 20 C -0.178 4.178 21 C -0.133 4.133 22 N -0.071 5.071 23 C 0.035 3.965 24 N -0.194 5.194 25 H 0.065 0.935 26 H 0.035 0.965 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.131 0.869 31 H 0.075 0.925 32 H 0.164 0.836 33 H 0.177 0.823 34 H 0.200 0.800 35 H 0.239 0.761 36 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 6.229 -12.164 -19.071 23.462 hybrid contribution 0.580 0.787 0.781 1.251 sum 6.809 -11.377 -18.290 22.591 Atomic orbital electron populations 1.21853 0.96904 1.00093 0.99903 1.18660 0.91886 0.92271 0.81531 0.97238 1.21497 1.32258 1.13173 0.91065 0.92297 1.25772 0.94941 0.95638 1.02044 1.70022 1.37086 1.23826 1.24646 0.85446 0.78353 0.79006 0.77833 1.20301 1.20548 1.18561 1.48139 1.47138 1.13872 1.21577 1.22273 1.02414 0.80102 1.00603 1.18178 0.79283 0.85910 0.82939 1.90706 1.62802 1.17496 1.77619 1.20468 1.01763 0.92206 0.97911 1.21594 0.93566 1.00620 0.91116 1.18908 1.05292 0.87122 1.00436 1.21573 1.00853 1.01960 0.95032 1.21516 1.02076 0.92136 1.02053 1.22885 0.99199 1.03018 0.88162 1.43444 1.30463 1.12256 1.20959 1.26069 0.86322 1.00659 0.83467 1.68623 1.26365 1.07168 1.17201 0.93522 0.96478 0.90952 0.92464 0.92705 0.86932 0.92485 0.83615 0.82284 0.79954 0.76073 0.72369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.71 8.97 71.98 0.65 -6.07 16 2 C 0.26 14.57 2.63 44.25 0.12 14.69 16 3 H 0.01 0.64 6.90 -2.39 -0.02 0.62 16 4 C -0.54 -31.16 7.95 25.60 0.20 -30.96 16 5 H 0.06 3.31 7.44 -2.91 -0.02 3.29 16 6 C 0.02 0.89 5.30 84.65 0.45 1.34 16 7 N -0.92 -54.53 11.32 21.45 0.24 -54.29 16 8 Si 0.97 44.31 29.54 68.60 2.03 46.33 16 9 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 12 N -0.58 -28.11 2.75 -830.82 -2.29 -30.39 16 13 C 0.09 3.36 8.27 127.77 1.06 4.41 16 14 C 0.55 26.55 7.63 86.62 0.66 27.21 16 15 O -0.60 -33.85 15.69 -4.16 -0.07 -33.91 16 16 C -0.01 -0.29 6.65 40.98 0.27 -0.02 16 17 C -0.05 -1.53 9.72 22.91 0.22 -1.30 16 18 C -0.01 -0.36 6.78 38.69 0.26 -0.10 16 19 C -0.17 -3.27 10.98 22.62 0.25 -3.02 16 20 C -0.16 -1.99 10.80 22.02 0.24 -1.75 16 21 C 0.00 -0.02 11.61 83.46 0.97 0.95 16 22 N -0.40 -7.56 2.95 -350.61 -1.04 -8.59 16 23 C 0.32 5.82 12.16 179.86 2.19 8.01 16 24 N -0.48 -13.84 6.04 -186.89 -1.13 -14.96 16 25 H 0.05 2.21 7.67 -2.38 -0.02 2.20 16 26 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 4.08 6.07 -2.39 -0.01 4.06 16 28 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 29 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.11 3.79 5.15 -5.28 -0.03 3.77 16 31 H 0.06 2.26 7.12 -2.39 -0.02 2.24 16 32 H 0.15 5.01 7.67 -2.91 -0.02 4.99 16 33 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 34 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 35 H 0.22 0.31 8.06 -2.91 -0.02 0.29 16 36 H 0.26 1.53 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -79.54 303.90 6.37 -73.17 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 1.08 Total: 9.26 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 7.53 Total: 13.39 kcal Atomic # 7 Polarization: -104.03 SS G_CDS: -4.21 Total: -108.24 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -0.07 Total: -33.91 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -79.54 6.37 -73.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931939380.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.874 kcal (2) G-P(sol) polarization free energy of solvation -79.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds