Wall clock time and date at job start Mon Mar 30 2020 01:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47215 * 336.84990 * 3 2 1 5 5 C 1.36842 * 119.99954 * 263.93765 * 4 3 2 6 6 H 1.07995 * 120.00266 * 142.80800 * 5 4 3 7 7 C 1.39058 * 119.99898 * 322.79687 * 5 4 3 8 8 N 1.31364 * 119.99447 * 169.52764 * 7 5 4 9 9 Si 1.86798 * 119.99840 * 349.53255 * 7 5 4 10 10 H 1.48496 * 109.47346 * 89.56931 * 9 7 5 11 11 H 1.48504 * 109.46945 * 209.56403 * 9 7 5 12 12 H 1.48500 * 109.47521 * 329.56509 * 9 7 5 13 13 C 1.34773 * 119.99984 * 83.94020 * 4 3 2 14 14 O 1.21673 * 120.00024 * 176.92971 * 13 4 3 15 15 C 1.47019 * 120.00006 * 356.92292 * 13 4 3 16 16 C 1.38519 * 126.89718 * 352.39580 * 15 13 4 17 17 C 1.39641 * 105.35285 * 179.97438 * 16 15 13 18 18 C 1.50703 * 126.06233 * 179.97438 * 17 16 15 19 19 C 1.52999 * 117.49646 * 343.75414 * 18 17 16 20 20 C 1.52992 * 117.50222 * 275.09043 * 18 17 16 21 21 N 1.30877 * 107.87900 * 0.02562 * 17 16 15 22 22 N 1.28445 * 110.95215 * 359.73812 * 21 17 16 23 23 C 1.46499 * 125.19742 * 180.25537 * 22 21 17 24 24 H 4.40639 * 5.51365 * 180.02562 * 4 1 2 25 25 H 1.09006 * 109.46667 * 216.85197 * 3 2 1 26 26 H 1.09000 * 109.47178 * 96.85343 * 3 2 1 27 27 H 0.97003 * 119.99078 * 180.02562 * 8 7 5 28 28 H 1.08004 * 127.32352 * 359.97438 * 16 15 13 29 29 H 1.09003 * 115.54747 * 129.41970 * 18 17 16 30 30 H 1.08995 * 117.50373 * 359.97438 * 19 18 17 31 31 H 1.09007 * 117.49594 * 145.02035 * 19 18 17 32 32 H 1.08993 * 117.50464 * 214.97643 * 20 18 17 33 33 H 1.09008 * 117.50042 * 359.97438 * 20 18 17 34 34 H 1.08995 * 109.47016 * 273.22907 * 23 22 21 35 35 H 1.09003 * 109.46845 * 33.23191 * 23 22 21 36 36 H 1.09003 * 109.47134 * 153.22117 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2691 0.5430 5 6 3.4811 -1.3604 1.8638 6 1 3.2660 -2.2625 2.4173 7 6 4.1100 -0.2917 2.4932 8 7 4.2573 -0.2927 3.7986 9 14 4.7450 1.1451 1.4825 10 1 3.6749 2.1655 1.3458 11 1 5.9196 1.7478 2.1625 12 1 5.1456 0.6644 0.1358 13 6 3.2439 -2.3473 -0.2583 14 8 3.7024 -3.3862 0.1787 15 6 2.8087 -2.2682 -1.6603 16 6 2.1377 -1.2179 -2.2648 17 6 1.9503 -1.6132 -3.5909 18 6 1.2638 -0.8120 -4.6669 19 6 0.3939 0.3662 -4.2240 20 6 -0.2603 -0.9108 -4.7576 21 7 2.4757 -2.8034 -3.7334 22 7 2.9893 -3.2139 -2.6300 23 6 3.6628 -4.5008 -2.4393 24 1 -1.0497 -0.0004 0.0000 25 1 3.0090 0.8232 0.6164 26 1 3.0093 0.1235 -1.0203 27 1 4.6956 0.4529 4.2376 28 1 1.8258 -0.2904 -1.8077 29 1 1.8176 -0.7060 -5.5998 30 1 0.3179 0.5616 -3.1544 31 1 0.3751 1.2471 -4.8657 32 1 -0.7092 -0.8693 -5.7499 33 1 -0.7665 -1.5556 -4.0392 34 1 2.9251 -5.2637 -2.1910 35 1 4.1794 -4.7800 -3.3577 36 1 4.3853 -4.4160 -1.6276 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935811248.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:10 Heat of formation + Delta-G solvation = 172.152195 kcal Electronic energy + Delta-G solvation = -21181.328431 eV Core-core repulsion = 18058.090877 eV Total energy + Delta-G solvation = -3123.237554 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.20493 -38.81650 -37.16707 -35.74255 -33.09202 -32.51505 -31.75593 -30.40912 -27.22146 -26.78225 -25.43515 -23.11209 -22.44938 -21.74314 -20.31176 -18.82082 -18.43441 -16.99938 -16.68096 -16.27377 -15.88190 -15.52491 -15.22514 -14.50576 -14.28705 -14.16646 -13.46831 -13.12210 -12.85931 -12.59993 -12.46973 -12.28109 -11.79225 -11.75701 -11.45021 -11.11791 -10.85742 -10.64772 -10.51853 -10.38079 -9.97454 -9.88813 -9.67594 -9.30578 -8.85685 -8.58261 -8.46011 -8.09381 -6.53229 -4.17066 1.82280 2.75969 2.79802 2.89027 3.06702 3.08140 3.11984 3.28060 3.87682 3.95520 3.98315 4.26788 4.58494 4.68704 4.92131 4.97962 5.01206 5.14837 5.23384 5.43427 5.46512 5.56960 5.63929 5.66663 5.74042 5.81390 5.88685 5.98067 6.10628 6.16386 6.27268 6.29470 6.83079 7.12662 7.33794 7.98309 8.03968 8.24967 8.46671 8.70590 9.06666 9.48053 10.57447 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.018894 B = 0.007342 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.592061 B = 3812.975557 C = 4648.363149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C 0.167 3.833 4 N -0.435 5.435 5 C -0.311 4.311 6 H 0.114 0.886 7 C 0.060 3.940 8 N -0.858 5.858 9 Si 0.880 3.120 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.260 1.260 13 C 0.530 3.470 14 O -0.560 6.560 15 C -0.004 4.004 16 C -0.223 4.223 17 C 0.047 3.953 18 C -0.067 4.067 19 C -0.169 4.169 20 C -0.168 4.168 21 N -0.288 5.288 22 N -0.265 5.265 23 C 0.091 3.909 24 H 0.215 0.785 25 H 0.093 0.907 26 H 0.108 0.892 27 H 0.278 0.722 28 H 0.177 0.823 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.677 2.450 -14.149 15.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.180 4.180 3 C 0.045 3.955 4 N -0.154 5.154 5 C -0.438 4.438 6 H 0.131 0.869 7 C -0.147 4.147 8 N -0.493 5.493 9 Si 0.709 3.291 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.184 1.184 13 C 0.319 3.681 14 O -0.442 6.442 15 C -0.133 4.133 16 C -0.251 4.251 17 C -0.109 4.109 18 C -0.087 4.087 19 C -0.206 4.206 20 C -0.206 4.206 21 N -0.121 5.121 22 N -0.052 5.052 23 C -0.049 4.049 24 H 0.232 0.768 25 H 0.110 0.890 26 H 0.125 0.875 27 H 0.089 0.911 28 H 0.193 0.807 29 H 0.132 0.868 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.035 0.974 -14.452 15.335 hybrid contribution -0.050 1.385 0.316 1.422 sum -5.085 2.360 -14.136 15.207 Atomic orbital electron populations 1.24736 0.95612 1.00165 1.01540 1.23356 0.94631 1.00591 0.99453 1.19713 0.84389 0.90280 1.01130 1.43307 1.55321 1.07348 1.09442 1.19142 1.37579 1.04997 0.82105 0.86896 1.25408 0.95350 0.98395 0.95589 1.69609 1.39774 1.32121 1.07825 0.86941 0.78760 0.82119 0.81282 1.19508 1.20930 1.18403 1.16787 0.83112 0.85854 0.82385 1.90652 1.49041 1.29223 1.75334 1.21874 1.06322 0.91702 0.93362 1.23001 1.06545 1.01513 0.94074 1.20923 1.03401 0.92375 0.94249 1.19951 0.92000 0.99637 0.97079 1.23019 1.03196 0.92038 1.02391 1.22966 0.94283 1.00825 1.02545 1.72939 1.14985 1.14431 1.09723 1.45437 1.39962 1.15009 1.04771 1.22259 0.98230 0.80145 1.04311 0.76775 0.88992 0.87498 0.91089 0.80668 0.86763 0.88188 0.88295 0.88586 0.88771 0.90245 0.89645 0.86872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.28 19.25 29.55 0.57 -2.71 16 2 C -0.18 -3.41 10.64 -37.12 -0.39 -3.81 16 3 C 0.17 3.48 3.82 -6.83 -0.03 3.45 16 4 N -0.43 -10.68 2.24 -119.31 -0.27 -10.95 16 5 C -0.31 -8.65 9.46 -15.01 -0.14 -8.79 16 6 H 0.11 3.51 7.93 -52.49 -0.42 3.09 16 7 C 0.06 1.61 5.45 -17.45 -0.10 1.51 16 8 N -0.86 -24.12 13.95 55.50 0.77 -23.34 16 9 Si 0.88 19.71 24.56 -169.99 -4.18 15.53 16 10 H -0.27 -5.53 6.64 56.52 0.38 -5.16 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.26 -5.65 6.92 56.52 0.39 -5.26 16 13 C 0.53 12.81 7.53 -12.70 -0.10 12.72 16 14 O -0.56 -14.73 14.63 5.21 0.08 -14.65 16 15 C 0.00 -0.08 6.78 -82.06 -0.56 -0.63 16 16 C -0.22 -4.09 7.49 -38.95 -0.29 -4.38 16 17 C 0.05 0.80 6.85 -82.47 -0.57 0.24 16 18 C -0.07 -0.86 6.33 -91.77 -0.58 -1.44 16 19 C -0.17 -1.83 10.03 -26.69 -0.27 -2.10 16 20 C -0.17 -1.85 10.24 -26.70 -0.27 -2.12 16 21 N -0.29 -5.21 11.90 33.63 0.40 -4.81 16 22 N -0.27 -4.98 3.75 -63.89 -0.24 -5.22 16 23 C 0.09 1.39 10.84 59.85 0.65 2.04 16 24 H 0.22 2.54 7.80 -54.10 -0.42 2.12 16 25 H 0.09 1.97 2.48 -51.93 -0.13 1.84 16 26 H 0.11 2.01 5.06 -51.93 -0.26 1.74 16 27 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.18 3.02 2.78 -52.48 -0.15 2.88 16 29 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.10 1.17 7.22 -51.93 -0.37 0.79 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 1.13 8.14 -51.92 -0.42 0.71 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.11 1.90 6.32 -51.93 -0.33 1.57 16 LS Contribution 303.16 15.07 4.57 4.57 Total: -1.00 -31.81 303.16 -4.72 -36.53 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -3.79 Total: 8.38 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -2.07 Total: -6.03 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.67 Total: -44.32 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.08 Total: -14.65 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.18 Total: 15.53 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.81 -4.72 -36.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935811248.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.679 kcal (2) G-P(sol) polarization free energy of solvation -31.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds