Wall clock time and date at job start Mon Mar 30 2020 01:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47215 * 336.84990 * 3 2 1 5 5 C 1.36842 * 119.99954 * 263.93765 * 4 3 2 6 6 H 1.07995 * 120.00266 * 142.80800 * 5 4 3 7 7 C 1.39058 * 119.99898 * 322.79687 * 5 4 3 8 8 N 1.31364 * 119.99447 * 169.52764 * 7 5 4 9 9 Si 1.86798 * 119.99840 * 349.53255 * 7 5 4 10 10 H 1.48496 * 109.47346 * 89.56931 * 9 7 5 11 11 H 1.48504 * 109.46945 * 209.56403 * 9 7 5 12 12 H 1.48500 * 109.47521 * 329.56509 * 9 7 5 13 13 C 1.34773 * 119.99984 * 83.94020 * 4 3 2 14 14 O 1.21673 * 120.00024 * 176.92971 * 13 4 3 15 15 C 1.47019 * 120.00006 * 356.92292 * 13 4 3 16 16 C 1.38519 * 126.89718 * 352.39580 * 15 13 4 17 17 C 1.39641 * 105.35285 * 179.97438 * 16 15 13 18 18 C 1.50703 * 126.06233 * 179.97438 * 17 16 15 19 19 C 1.52999 * 117.49646 * 343.75414 * 18 17 16 20 20 C 1.52992 * 117.50222 * 275.09043 * 18 17 16 21 21 N 1.30877 * 107.87900 * 0.02562 * 17 16 15 22 22 N 1.28445 * 110.95215 * 359.73812 * 21 17 16 23 23 C 1.46499 * 125.19742 * 180.25537 * 22 21 17 24 24 H 4.40639 * 5.51365 * 180.02562 * 4 1 2 25 25 H 1.09006 * 109.46667 * 216.85197 * 3 2 1 26 26 H 1.09000 * 109.47178 * 96.85343 * 3 2 1 27 27 H 0.97003 * 119.99078 * 180.02562 * 8 7 5 28 28 H 1.08004 * 127.32352 * 359.97438 * 16 15 13 29 29 H 1.09003 * 115.54747 * 129.41970 * 18 17 16 30 30 H 1.08995 * 117.50373 * 359.97438 * 19 18 17 31 31 H 1.09007 * 117.49594 * 145.02035 * 19 18 17 32 32 H 1.08993 * 117.50464 * 214.97643 * 20 18 17 33 33 H 1.09008 * 117.50042 * 359.97438 * 20 18 17 34 34 H 1.08995 * 109.47016 * 273.22907 * 23 22 21 35 35 H 1.09003 * 109.46845 * 33.23191 * 23 22 21 36 36 H 1.09003 * 109.47134 * 153.22117 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2691 0.5430 5 6 3.4811 -1.3604 1.8638 6 1 3.2660 -2.2625 2.4173 7 6 4.1100 -0.2917 2.4932 8 7 4.2573 -0.2927 3.7986 9 14 4.7450 1.1451 1.4825 10 1 3.6749 2.1655 1.3458 11 1 5.9196 1.7478 2.1625 12 1 5.1456 0.6644 0.1358 13 6 3.2439 -2.3473 -0.2583 14 8 3.7024 -3.3862 0.1787 15 6 2.8087 -2.2682 -1.6603 16 6 2.1377 -1.2179 -2.2648 17 6 1.9503 -1.6132 -3.5909 18 6 1.2638 -0.8120 -4.6669 19 6 0.3939 0.3662 -4.2240 20 6 -0.2603 -0.9108 -4.7576 21 7 2.4757 -2.8034 -3.7334 22 7 2.9893 -3.2139 -2.6300 23 6 3.6628 -4.5008 -2.4393 24 1 -1.0497 -0.0004 0.0000 25 1 3.0090 0.8232 0.6164 26 1 3.0093 0.1235 -1.0203 27 1 4.6956 0.4529 4.2376 28 1 1.8258 -0.2904 -1.8077 29 1 1.8176 -0.7060 -5.5998 30 1 0.3179 0.5616 -3.1544 31 1 0.3751 1.2471 -4.8657 32 1 -0.7092 -0.8693 -5.7499 33 1 -0.7665 -1.5556 -4.0392 34 1 2.9251 -5.2637 -2.1910 35 1 4.1794 -4.7800 -3.3577 36 1 4.3853 -4.4160 -1.6276 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935811248.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:09 Heat of formation + Delta-G solvation = 151.205287 kcal Electronic energy + Delta-G solvation = -21182.236758 eV Core-core repulsion = 18058.090877 eV Total energy + Delta-G solvation = -3124.145880 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.63896 -40.62971 -38.18063 -37.48020 -34.91394 -33.82437 -33.49532 -31.97136 -28.75763 -28.15548 -27.33656 -24.35790 -23.61020 -23.00601 -21.77058 -20.38830 -19.87107 -18.77685 -18.28399 -17.87611 -17.37656 -17.02472 -16.45536 -16.13620 -15.78259 -15.29746 -15.10556 -14.87301 -14.55549 -14.33891 -13.77865 -13.75761 -13.28641 -12.93925 -12.88548 -12.52953 -12.24833 -12.04640 -11.85422 -11.50338 -11.45992 -11.35366 -11.11991 -11.08730 -10.67429 -10.13089 -10.06333 -9.73641 -8.58997 -6.31170 0.23987 1.12855 1.26843 1.35371 1.36851 1.47160 1.70038 1.85471 2.07970 2.17299 2.62430 2.88541 2.97819 3.40102 3.47427 3.57722 3.94073 3.99983 4.06387 4.14103 4.19134 4.25790 4.33799 4.42342 4.53199 4.62059 4.80234 4.89094 5.02149 5.09647 5.28328 5.36070 5.37730 5.48459 5.73862 5.87224 6.30447 6.64685 6.67699 7.00495 7.06629 7.54492 8.56455 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.018894 B = 0.007342 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.592061 B = 3812.975557 C = 4648.363149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.240 4.240 3 C 0.169 3.831 4 N -0.446 5.446 5 C -0.332 4.332 6 H 0.056 0.944 7 C 0.015 3.985 8 N -0.903 5.903 9 Si 0.944 3.056 10 H -0.233 1.233 11 H -0.278 1.278 12 H -0.252 1.252 13 C 0.527 3.473 14 O -0.598 6.598 15 C -0.037 4.037 16 C -0.209 4.209 17 C 0.050 3.950 18 C -0.090 4.090 19 C -0.156 4.156 20 C -0.159 4.159 21 N -0.289 5.289 22 N -0.269 5.269 23 C 0.086 3.914 24 H 0.259 0.741 25 H 0.087 0.913 26 H 0.127 0.873 27 H 0.285 0.715 28 H 0.189 0.811 29 H 0.131 0.869 30 H 0.091 0.909 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.118 0.882 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.380 4.813 -17.475 19.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.241 4.241 3 C 0.049 3.951 4 N -0.165 5.165 5 C -0.459 4.459 6 H 0.074 0.926 7 C -0.189 4.189 8 N -0.540 5.540 9 Si 0.767 3.233 10 H -0.158 1.158 11 H -0.205 1.205 12 H -0.175 1.175 13 C 0.317 3.683 14 O -0.483 6.483 15 C -0.166 4.166 16 C -0.237 4.237 17 C -0.106 4.106 18 C -0.109 4.109 19 C -0.193 4.193 20 C -0.197 4.197 21 N -0.121 5.121 22 N -0.056 5.056 23 C -0.053 4.053 24 H 0.275 0.725 25 H 0.104 0.896 26 H 0.144 0.856 27 H 0.095 0.905 28 H 0.205 0.795 29 H 0.148 0.852 30 H 0.110 0.890 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.137 0.863 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.763 3.343 -17.781 19.315 hybrid contribution 0.350 0.521 1.307 1.450 sum -6.412 3.863 -16.473 18.094 Atomic orbital electron populations 1.25723 0.96365 0.96745 0.98302 1.23242 0.94803 1.03613 1.02435 1.19718 0.86083 0.87809 1.01534 1.43321 1.55965 1.08956 1.08256 1.18708 1.39678 1.03804 0.83744 0.92618 1.26212 0.94684 1.01378 0.96617 1.69730 1.40804 1.33728 1.09734 0.85932 0.78967 0.78807 0.79569 1.15814 1.20484 1.17548 1.17318 0.82007 0.85152 0.83826 1.90611 1.50457 1.30641 1.76564 1.21491 1.09095 0.93935 0.92065 1.23194 1.04961 1.01015 0.94565 1.21567 1.02482 0.91943 0.94655 1.20164 0.93115 1.00960 0.96706 1.23141 1.01136 0.92533 1.02521 1.23043 0.92450 1.00526 1.03653 1.72973 1.14936 1.15089 1.09149 1.45727 1.39997 1.15459 1.04437 1.22406 0.98238 0.79371 1.05286 0.72500 0.89613 0.85623 0.90459 0.79463 0.85166 0.89015 0.85524 0.86007 0.90092 0.89221 0.86333 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.47 19.25 74.32 1.43 -3.04 16 2 C -0.24 -8.71 10.64 31.12 0.33 -8.38 16 3 C 0.17 6.92 3.82 84.57 0.32 7.24 16 4 N -0.45 -22.58 2.24 -649.60 -1.46 -24.04 16 5 C -0.33 -19.57 9.46 84.11 0.80 -18.78 16 6 H 0.06 3.81 7.93 -2.91 -0.02 3.79 16 7 C 0.01 0.81 5.45 84.96 0.46 1.27 16 8 N -0.90 -52.97 13.95 21.68 0.30 -52.67 16 9 Si 0.94 40.52 24.56 68.60 1.68 42.20 16 10 H -0.23 -8.68 6.64 99.48 0.66 -8.02 16 11 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.25 -10.37 6.92 99.48 0.69 -9.68 16 13 C 0.53 26.50 7.53 86.55 0.65 27.15 16 14 O -0.60 -33.51 14.63 -4.26 -0.06 -33.57 16 15 C -0.04 -1.55 6.78 40.76 0.28 -1.28 16 16 C -0.21 -7.30 7.49 22.68 0.17 -7.13 16 17 C 0.05 1.57 6.85 43.04 0.29 1.86 16 18 C -0.09 -1.98 6.33 -11.54 -0.07 -2.05 16 19 C -0.16 -2.67 10.03 30.62 0.31 -2.36 16 20 C -0.16 -2.83 10.24 30.62 0.31 -2.52 16 21 N -0.29 -9.90 11.90 -47.50 -0.57 -10.47 16 22 N -0.27 -9.97 3.75 -356.03 -1.34 -11.30 16 23 C 0.09 2.65 10.84 127.77 1.38 4.03 16 24 H 0.26 4.76 7.80 -4.43 -0.03 4.73 16 25 H 0.09 3.54 2.48 -2.38 -0.01 3.53 16 26 H 0.13 4.51 5.06 -2.39 -0.01 4.50 16 27 H 0.29 15.20 8.31 -92.71 -0.77 14.43 16 28 H 0.19 6.03 2.78 -2.91 -0.01 6.02 16 29 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.09 1.75 7.22 -2.39 -0.02 1.73 16 31 H 0.13 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 36 H 0.09 3.24 6.32 -2.39 -0.02 3.22 16 Total: -1.00 -74.45 303.16 6.29 -68.15 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 1.05 Total: 25.67 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: 6.67 Total: -3.98 kcal Atomic # 7 Polarization: -95.42 SS G_CDS: -3.05 Total: -98.48 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.06 Total: -33.57 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 1.68 Total: 42.20 kcal Total: -74.45 6.29 -68.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935811248.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.360 kcal (2) G-P(sol) polarization free energy of solvation -74.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds