Wall clock time and date at job start Mon Mar 30 2020 01:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47082 * 2 1 4 4 C 1.37101 * 119.99330 * 264.76691 * 3 2 1 5 5 H 1.08004 * 119.99707 * 138.85679 * 4 3 2 6 6 C 1.38951 * 119.99996 * 318.84693 * 4 3 2 7 7 N 1.31408 * 120.00195 * 341.83266 * 6 4 3 8 8 Si 1.86805 * 119.99452 * 161.83007 * 6 4 3 9 9 H 1.48494 * 109.47421 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46654 * 120.00345 * 8 6 4 11 11 H 1.48498 * 109.46686 * 240.00076 * 8 6 4 12 12 C 1.34775 * 120.00289 * 84.76105 * 3 2 1 13 13 O 1.21290 * 119.99785 * 179.97438 * 12 3 2 14 14 C 1.50701 * 120.00174 * 0.02562 * 12 3 2 15 15 C 1.50692 * 109.47311 * 179.97438 * 14 12 3 16 16 C 1.34463 * 126.51048 * 265.01981 * 15 14 12 17 17 N 1.36671 * 109.96664 * 180.02562 * 16 15 14 18 18 H 0.97000 * 125.05081 * 180.02562 * 17 16 15 19 19 C 1.37548 * 109.89866 * 0.02562 * 17 16 15 20 20 C 1.38869 * 134.46716 * 180.02562 * 19 17 16 21 21 N 1.31733 * 120.27503 * 179.97438 * 20 19 17 22 22 C 1.32306 * 122.57067 * 0.02562 * 21 20 19 23 23 C 1.36638 * 121.32192 * 0.02582 * 22 21 20 24 24 C 1.39839 * 118.69501 * 359.97321 * 23 22 21 25 25 H 1.08994 * 109.47778 * 300.00732 * 1 2 3 26 26 H 1.09001 * 109.46838 * 60.00505 * 1 2 3 27 27 H 1.08998 * 109.47230 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47271 * 239.99269 * 2 1 3 29 29 H 1.09001 * 109.46838 * 119.99495 * 2 1 3 30 30 H 0.96995 * 119.99869 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47021 * 59.98974 * 14 12 3 32 32 H 1.09009 * 109.46239 * 299.99608 * 14 12 3 33 33 H 1.07993 * 125.02079 * 0.04483 * 16 15 14 34 34 H 1.08000 * 119.86061 * 359.96484 * 20 19 17 35 35 H 1.08004 * 119.33943 * 180.02562 * 22 21 20 36 36 H 1.07999 * 120.65156 * 179.70712 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3489 1.9913 -1.1825 5 1 2.0744 3.0217 -1.3536 6 6 3.0373 1.2840 -2.1605 7 7 3.6793 0.1816 -1.8450 8 14 3.0500 1.9002 -3.9240 9 1 2.2586 3.1532 -4.0162 10 1 4.4489 2.1666 -4.3450 11 1 2.4532 0.8706 -4.8122 12 6 2.1425 2.0521 1.1623 13 8 2.5473 3.1955 1.1622 14 6 1.7796 1.3814 2.4621 15 6 2.0079 2.3393 3.6026 16 6 3.1110 2.4252 4.3667 17 7 2.9557 3.4099 5.3016 18 1 3.6184 3.6575 5.9652 19 6 1.7200 3.9976 5.1617 20 6 1.0487 5.0196 5.8200 21 7 -0.1645 5.3680 5.4430 22 6 -0.7960 4.7779 4.4413 23 6 -0.2156 3.7620 3.7356 24 6 1.0723 3.3485 4.0902 25 1 -0.3634 0.5139 0.8898 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8898 29 1 1.8933 -0.5138 0.8900 30 1 4.1595 -0.3123 -2.5278 31 1 2.4016 0.4970 2.6006 32 1 0.7301 1.0874 2.4384 33 1 3.9901 1.8074 4.2576 34 1 1.5233 5.5309 6.6445 35 1 -1.7903 5.1059 4.1760 36 1 -0.7429 3.2848 2.9228 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117739245.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:09 Heat of formation + Delta-G solvation = 37.183129 kcal Electronic energy + Delta-G solvation = -20652.030536 eV Core-core repulsion = 17522.940284 eV Total energy + Delta-G solvation = -3129.090252 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.33954 -38.47830 -37.75139 -34.90939 -32.88232 -31.97689 -30.58671 -29.70879 -29.38159 -27.21023 -24.55509 -23.42013 -22.32251 -22.18779 -20.07496 -18.63164 -17.74903 -16.72178 -16.57583 -15.84536 -15.52034 -14.96708 -14.59143 -14.44791 -14.11189 -14.04498 -13.70789 -12.90763 -12.73023 -12.56277 -12.45887 -12.15786 -11.74596 -11.67904 -11.36810 -11.05474 -11.00218 -10.93006 -10.32052 -10.28531 -10.06269 -9.73739 -9.41291 -8.88855 -8.44245 -8.29632 -7.54425 -7.36167 -6.28396 -3.96062 1.18786 1.70612 2.88391 3.17978 3.20665 3.28167 3.34845 4.00812 4.13903 4.22146 4.65957 4.88769 4.94570 4.97462 5.08371 5.15787 5.36259 5.57207 5.72609 5.80679 5.85603 5.87958 5.96553 6.12599 6.16158 6.26031 6.39764 6.49187 6.54693 6.75115 6.86096 6.91639 7.15883 7.24748 7.59397 7.62258 8.23159 8.35792 8.58745 9.26741 9.46200 10.10404 10.76821 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.026520 B = 0.004747 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.543187 B = 5896.571342 C = 5964.810779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.103 3.897 3 N -0.446 5.446 4 C -0.304 4.304 5 H 0.086 0.914 6 C 0.037 3.963 7 N -0.874 5.874 8 Si 0.915 3.085 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.466 3.534 13 O -0.571 6.571 14 C -0.067 4.067 15 C -0.129 4.129 16 C 0.065 3.935 17 N -0.585 5.585 18 H 0.416 0.584 19 C 0.038 3.962 20 C 0.104 3.896 21 N -0.474 5.474 22 C 0.043 3.957 23 C -0.109 4.109 24 C -0.056 4.056 25 H 0.042 0.958 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.102 0.898 29 H 0.048 0.952 30 H 0.265 0.735 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.173 0.827 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.013 -0.622 12.069 12.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.021 4.021 3 N -0.167 5.167 4 C -0.432 4.432 5 H 0.104 0.896 6 C -0.166 4.166 7 N -0.512 5.512 8 Si 0.742 3.258 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.207 1.207 12 C 0.253 3.747 13 O -0.454 6.454 14 C -0.108 4.108 15 C -0.136 4.136 16 C -0.063 4.063 17 N -0.188 5.188 18 H 0.253 0.747 19 C -0.072 4.072 20 C -0.064 4.064 21 N -0.183 5.183 22 C -0.106 4.106 23 C -0.130 4.130 24 C -0.068 4.068 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.120 0.880 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.190 0.810 34 H 0.166 0.834 35 H 0.168 0.832 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.098 0.486 12.411 13.079 hybrid contribution 0.922 -0.545 -1.184 1.596 sum -3.176 -0.059 11.227 11.668 Atomic orbital electron populations 1.22234 0.98345 1.00305 1.01523 1.21440 0.91536 0.85758 1.03366 1.43460 1.56685 1.11717 1.04801 1.19397 1.34431 0.98436 0.90957 0.89622 1.25395 0.94168 0.96607 1.00455 1.69928 1.29865 1.17674 1.33764 0.86051 0.78084 0.79013 0.82662 1.19245 1.20837 1.20662 1.20325 0.81879 0.87922 0.84534 1.90534 1.49403 1.18666 1.86749 1.20084 1.02684 0.96751 0.91283 1.19754 0.93890 1.00575 0.99407 1.21691 0.99490 0.93511 0.91582 1.41509 1.14300 1.31626 1.31370 0.74745 1.19342 0.87910 0.99493 1.00451 1.21661 0.91090 0.94160 0.99534 1.67492 1.08168 1.27480 1.15117 1.21943 1.00163 0.95050 0.93454 1.21257 0.93928 0.97777 0.99998 1.19251 0.94615 0.97147 0.95794 0.93853 0.92455 0.93152 0.87963 0.93397 0.92456 0.89341 0.89655 0.81004 0.83406 0.83186 0.85170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 10.15 37.16 0.38 -2.50 16 2 C 0.10 2.17 5.41 -4.04 -0.02 2.15 16 3 N -0.45 -11.13 2.50 -114.81 -0.29 -11.42 16 4 C -0.30 -8.43 8.84 -14.93 -0.13 -8.56 16 5 H 0.09 2.51 7.82 -52.48 -0.41 2.10 16 6 C 0.04 0.99 4.95 -17.47 -0.09 0.91 16 7 N -0.87 -23.48 11.61 55.50 0.64 -22.84 16 8 Si 0.92 20.71 29.59 -169.99 -5.03 15.68 16 9 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 C 0.47 11.26 7.59 -10.99 -0.08 11.17 16 13 O -0.57 -16.13 15.95 5.55 0.09 -16.05 16 14 C -0.07 -1.23 4.84 -29.04 -0.14 -1.37 16 15 C -0.13 -2.26 4.80 -102.86 -0.49 -2.76 16 16 C 0.06 0.95 11.74 -16.73 -0.20 0.75 16 17 N -0.58 -7.43 6.06 -10.64 -0.06 -7.50 16 18 H 0.42 3.57 8.96 -40.82 -0.37 3.21 16 19 C 0.04 0.58 7.33 -84.01 -0.62 -0.04 16 20 C 0.10 1.46 11.25 -17.36 -0.20 1.26 16 21 N -0.47 -7.33 10.32 -13.41 -0.14 -7.47 16 22 C 0.04 0.65 11.11 -17.93 -0.20 0.45 16 23 C -0.11 -1.79 10.13 -39.56 -0.40 -2.19 16 24 C -0.06 -0.99 6.42 -105.14 -0.67 -1.66 16 25 H 0.04 0.70 6.60 -51.93 -0.34 0.36 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.10 2.40 5.76 -51.93 -0.30 2.10 16 29 H 0.05 0.90 6.66 -51.93 -0.35 0.56 16 30 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 31 H 0.09 1.44 7.41 -51.93 -0.38 1.06 16 32 H 0.09 1.41 6.54 -51.92 -0.34 1.07 16 33 H 0.17 2.02 8.06 -52.49 -0.42 1.59 16 34 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.15 1.81 8.06 -52.48 -0.42 1.39 16 36 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 308.45 15.07 4.65 4.65 Total: -1.00 -34.17 308.45 -7.16 -41.33 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -4.16 Total: 5.98 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -2.86 Total: -2.38 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.15 Total: -49.22 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: 0.09 Total: -16.05 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.17 -7.16 -41.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117739245.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.516 kcal (2) G-P(sol) polarization free energy of solvation -34.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds