Wall clock time and date at job start Mon Mar 30 2020 01:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47082 * 2 1 4 4 C 1.37101 * 119.99330 * 264.76691 * 3 2 1 5 5 H 1.08004 * 119.99707 * 138.85679 * 4 3 2 6 6 C 1.38951 * 119.99996 * 318.84693 * 4 3 2 7 7 N 1.31408 * 120.00195 * 341.83266 * 6 4 3 8 8 Si 1.86805 * 119.99452 * 161.83007 * 6 4 3 9 9 H 1.48494 * 109.47421 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46654 * 120.00345 * 8 6 4 11 11 H 1.48498 * 109.46686 * 240.00076 * 8 6 4 12 12 C 1.34775 * 120.00289 * 84.76105 * 3 2 1 13 13 O 1.21290 * 119.99785 * 179.97438 * 12 3 2 14 14 C 1.50701 * 120.00174 * 0.02562 * 12 3 2 15 15 C 1.50692 * 109.47311 * 179.97438 * 14 12 3 16 16 C 1.34463 * 126.51048 * 265.01981 * 15 14 12 17 17 N 1.36671 * 109.96664 * 180.02562 * 16 15 14 18 18 H 0.97000 * 125.05081 * 180.02562 * 17 16 15 19 19 C 1.37548 * 109.89866 * 0.02562 * 17 16 15 20 20 C 1.38869 * 134.46716 * 180.02562 * 19 17 16 21 21 N 1.31733 * 120.27503 * 179.97438 * 20 19 17 22 22 C 1.32306 * 122.57067 * 0.02562 * 21 20 19 23 23 C 1.36638 * 121.32192 * 0.02582 * 22 21 20 24 24 C 1.39839 * 118.69501 * 359.97321 * 23 22 21 25 25 H 1.08994 * 109.47778 * 300.00732 * 1 2 3 26 26 H 1.09001 * 109.46838 * 60.00505 * 1 2 3 27 27 H 1.08998 * 109.47230 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47271 * 239.99269 * 2 1 3 29 29 H 1.09001 * 109.46838 * 119.99495 * 2 1 3 30 30 H 0.96995 * 119.99869 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47021 * 59.98974 * 14 12 3 32 32 H 1.09009 * 109.46239 * 299.99608 * 14 12 3 33 33 H 1.07993 * 125.02079 * 0.04483 * 16 15 14 34 34 H 1.08000 * 119.86061 * 359.96484 * 20 19 17 35 35 H 1.08004 * 119.33943 * 180.02562 * 22 21 20 36 36 H 1.07999 * 120.65156 * 179.70712 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3489 1.9913 -1.1825 5 1 2.0744 3.0217 -1.3536 6 6 3.0373 1.2840 -2.1605 7 7 3.6793 0.1816 -1.8450 8 14 3.0500 1.9002 -3.9240 9 1 2.2586 3.1532 -4.0162 10 1 4.4489 2.1666 -4.3450 11 1 2.4532 0.8706 -4.8122 12 6 2.1425 2.0521 1.1623 13 8 2.5473 3.1955 1.1622 14 6 1.7796 1.3814 2.4621 15 6 2.0079 2.3393 3.6026 16 6 3.1110 2.4252 4.3667 17 7 2.9557 3.4099 5.3016 18 1 3.6184 3.6575 5.9652 19 6 1.7200 3.9976 5.1617 20 6 1.0487 5.0196 5.8200 21 7 -0.1645 5.3680 5.4430 22 6 -0.7960 4.7779 4.4413 23 6 -0.2156 3.7620 3.7356 24 6 1.0723 3.3485 4.0902 25 1 -0.3634 0.5139 0.8898 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8898 29 1 1.8933 -0.5138 0.8900 30 1 4.1595 -0.3123 -2.5278 31 1 2.4016 0.4970 2.6006 32 1 0.7301 1.0874 2.4384 33 1 3.9901 1.8074 4.2576 34 1 1.5233 5.5309 6.6445 35 1 -1.7903 5.1059 4.1760 36 1 -0.7429 3.2848 2.9228 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117739245.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:08 Heat of formation + Delta-G solvation = 14.686059 kcal Electronic energy + Delta-G solvation = -20653.006082 eV Core-core repulsion = 17522.940284 eV Total energy + Delta-G solvation = -3130.065798 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.47791 -40.26679 -38.92174 -36.79989 -34.32704 -33.73748 -31.88304 -31.07270 -30.83207 -28.65273 -26.42384 -24.55065 -23.87728 -23.41441 -21.59719 -20.03742 -18.98931 -18.64686 -17.72858 -17.64780 -16.83132 -16.65782 -16.00359 -15.78909 -15.63300 -15.45708 -14.96847 -14.47644 -14.38924 -13.97369 -13.75190 -13.54201 -13.43841 -13.21617 -12.85189 -12.63116 -12.60283 -12.44162 -12.19084 -12.04691 -11.72263 -10.95840 -10.84840 -10.56811 -10.25761 -9.52752 -9.32446 -8.73008 -8.29575 -6.05354 0.03856 0.54513 1.36827 1.41146 1.53800 1.67282 2.16989 2.17548 2.33719 2.97636 3.05408 3.28585 3.60962 3.79011 3.83385 4.02028 4.20570 4.24417 4.37279 4.46786 4.58605 4.65669 4.68464 4.72458 4.75732 4.89696 5.05370 5.11259 5.31046 5.35478 5.48830 5.58432 5.61535 5.67278 6.00099 6.29343 6.63889 6.66818 7.09828 7.27060 7.56042 8.19182 8.73530 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.026520 B = 0.004747 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.543187 B = 5896.571342 C = 5964.810779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.102 3.898 3 N -0.459 5.459 4 C -0.337 4.337 5 H 0.054 0.946 6 C 0.006 3.994 7 N -0.891 5.891 8 Si 0.975 3.025 9 H -0.275 1.275 10 H -0.280 1.280 11 H -0.263 1.263 12 C 0.455 3.545 13 O -0.623 6.623 14 C -0.049 4.049 15 C -0.176 4.176 16 C 0.082 3.918 17 N -0.565 5.565 18 H 0.437 0.563 19 C 0.025 3.975 20 C 0.111 3.889 21 N -0.492 5.492 22 C 0.042 3.958 23 C -0.135 4.135 24 C -0.087 4.087 25 H 0.054 0.946 26 H 0.038 0.962 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.272 0.728 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.202 0.798 34 H 0.186 0.814 35 H 0.173 0.827 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.821 -1.358 13.251 13.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.021 4.021 3 N -0.179 5.179 4 C -0.465 4.465 5 H 0.071 0.929 6 C -0.196 4.196 7 N -0.529 5.529 8 Si 0.800 3.200 9 H -0.200 1.200 10 H -0.205 1.205 11 H -0.188 1.188 12 C 0.244 3.756 13 O -0.509 6.509 14 C -0.089 4.089 15 C -0.183 4.183 16 C -0.047 4.047 17 N -0.170 5.170 18 H 0.278 0.722 19 C -0.085 4.085 20 C -0.057 4.057 21 N -0.201 5.201 22 C -0.106 4.106 23 C -0.155 4.155 24 C -0.098 4.098 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.103 0.897 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.128 0.872 32 H 0.118 0.882 33 H 0.219 0.781 34 H 0.203 0.797 35 H 0.190 0.810 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.914 -0.280 13.620 14.174 hybrid contribution 0.918 -0.299 -1.494 1.779 sum -2.995 -0.578 12.126 12.504 Atomic orbital electron populations 1.22125 0.95562 1.02454 1.01204 1.21556 0.93804 0.83582 1.03188 1.43748 1.56707 1.13011 1.04441 1.19281 1.36211 0.97809 0.93208 0.92858 1.26052 0.93317 0.96695 1.03578 1.69980 1.29718 1.18155 1.35002 0.85161 0.77968 0.78586 0.78328 1.19952 1.20535 1.18754 1.21326 0.80634 0.87409 0.86182 1.90481 1.51656 1.21031 1.87772 1.19904 1.03824 0.97018 0.88165 1.19852 0.95629 1.02128 1.00710 1.22145 0.99193 0.92982 0.90407 1.41480 1.13942 1.30424 1.31118 0.72231 1.19513 0.88719 0.99938 1.00322 1.22272 0.90510 0.93286 0.99616 1.67585 1.08996 1.27965 1.15530 1.22306 1.01016 0.94345 0.92957 1.21394 0.94336 0.98968 1.00843 1.19615 0.95370 0.97880 0.96976 0.92672 0.94287 0.89674 0.90441 0.91109 0.91868 0.87209 0.88190 0.78101 0.79710 0.80966 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.21 10.15 71.98 0.73 -4.48 16 2 C 0.10 4.24 5.41 86.38 0.47 4.71 16 3 N -0.46 -23.34 2.50 -635.53 -1.59 -24.93 16 4 C -0.34 -19.30 8.84 84.04 0.74 -18.56 16 5 H 0.05 3.32 7.82 -2.91 -0.02 3.30 16 6 C 0.01 0.32 4.95 84.93 0.42 0.74 16 7 N -0.89 -47.92 11.61 21.66 0.25 -47.66 16 8 Si 0.98 42.89 29.59 68.60 2.03 44.92 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 12 C 0.45 22.38 7.59 87.66 0.66 23.05 16 13 O -0.62 -36.51 15.95 -3.06 -0.05 -36.56 16 14 C -0.05 -1.74 4.84 29.10 0.14 -1.60 16 15 C -0.18 -6.03 4.80 -18.72 -0.09 -6.12 16 16 C 0.08 2.23 11.74 83.07 0.98 3.21 16 17 N -0.57 -12.99 6.06 -187.59 -1.14 -14.13 16 18 H 0.44 6.10 8.96 -92.71 -0.83 5.27 16 19 C 0.03 0.74 7.33 39.08 0.29 1.02 16 20 C 0.11 2.90 11.25 84.86 0.95 3.86 16 21 N -0.49 -14.58 10.32 -196.32 -2.03 -16.60 16 22 C 0.04 1.25 11.11 84.25 0.94 2.19 16 23 C -0.14 -4.47 10.13 22.28 0.23 -4.24 16 24 C -0.09 -3.01 6.42 -20.20 -0.13 -3.14 16 25 H 0.05 1.71 6.60 -2.39 -0.02 1.69 16 26 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.08 3.63 5.76 -2.39 -0.01 3.61 16 29 H 0.07 2.56 6.66 -2.39 -0.02 2.55 16 30 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 31 H 0.11 3.37 7.41 -2.39 -0.02 3.35 16 32 H 0.10 3.20 6.54 -2.38 -0.02 3.19 16 33 H 0.20 4.10 8.06 -2.91 -0.02 4.08 16 34 H 0.19 3.25 8.06 -2.91 -0.02 3.23 16 35 H 0.17 4.04 8.06 -2.91 -0.02 4.02 16 36 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -76.62 308.45 4.09 -72.53 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.29 Total: 21.81 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 6.32 Total: 0.63 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -4.50 Total: -103.33 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -0.05 Total: -36.56 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -76.62 4.09 -72.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117739245.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.216 kcal (2) G-P(sol) polarization free energy of solvation -76.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds