Wall clock time and date at job start Mon Mar 30 2020 01:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 5 5 C 1.34769 * 119.99686 * 84.99974 * 4 2 1 6 6 O 1.21275 * 120.00678 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99690 * 179.97438 * 5 4 2 8 8 C 1.50704 * 109.47153 * 179.97438 * 7 5 4 9 9 H 1.07991 * 119.99857 * 0.02562 * 8 7 5 10 10 C 1.37886 * 119.99693 * 179.97438 * 8 7 5 11 11 N 1.31510 * 119.99950 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99530 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47108 * 90.00112 * 12 10 8 14 14 H 1.48498 * 109.46756 * 210.00339 * 12 10 8 15 15 H 1.48501 * 109.47127 * 330.00126 * 12 10 8 16 16 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 17 17 N 1.30110 * 124.95080 * 94.69422 * 16 2 1 18 18 C 1.35783 * 109.64174 * 179.89309 * 17 16 2 19 19 C 1.39747 * 133.59390 * 180.13500 * 18 17 16 20 20 C 1.36608 * 119.88050 * 180.29893 * 19 18 17 21 21 C 1.38775 * 120.66986 * 359.95474 * 20 19 18 22 22 C 1.37858 * 120.45427 * 0.02562 * 21 20 19 23 23 C 1.38841 * 119.68552 * 0.02562 * 22 21 20 24 24 N 1.36034 * 124.94847 * 275.00185 * 16 2 1 25 25 H 0.96997 * 126.35606 * 359.93908 * 24 16 2 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 0.97000 * 119.99634 * 265.00306 * 4 2 1 30 30 H 1.08996 * 109.47353 * 300.00507 * 7 5 4 31 31 H 1.09006 * 109.47337 * 60.00072 * 7 5 4 32 32 H 0.97006 * 119.99281 * 179.97438 * 11 10 8 33 33 H 1.07993 * 120.06326 * 0.27262 * 19 18 17 34 34 H 1.07995 * 119.66435 * 179.97438 * 20 19 18 35 35 H 1.07999 * 119.77625 * 180.02562 * 21 20 19 36 36 H 1.07993 * 120.15944 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1472 -0.0183 -2.3570 6 8 1.8592 1.1585 -2.4115 7 6 2.6501 -0.7285 -3.5873 8 6 2.7001 0.2396 -4.7412 9 1 2.3983 1.2665 -4.5978 10 6 3.1322 -0.1856 -5.9796 11 7 3.5002 -1.4361 -6.1540 12 14 3.1949 1.0147 -7.4096 13 1 4.5260 1.6718 -7.4463 14 1 2.9693 0.2817 -8.6812 15 1 2.1389 2.0446 -7.2380 16 6 2.0323 -0.7104 1.2305 17 7 2.3630 -1.9677 1.2825 18 6 2.7741 -2.2800 2.5384 19 6 3.2319 -3.4564 3.1379 20 6 3.5748 -3.4575 4.4602 21 6 3.4745 -2.2996 5.2185 22 6 3.0259 -1.1275 4.6481 23 6 2.6718 -1.1075 3.3058 24 7 2.2004 -0.1320 2.4502 25 1 2.0220 0.7941 2.6769 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 2.2491 -1.6318 -1.1525 30 1 3.6494 -1.1204 -3.3977 31 1 1.9779 -1.5509 -3.8325 32 1 3.8038 -1.7352 -7.0254 33 1 3.3141 -4.3631 2.5570 34 1 3.9277 -4.3687 4.9201 35 1 3.7499 -2.3168 6.2627 36 1 2.9501 -0.2291 5.2426 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143201290.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:21 Heat of formation + Delta-G solvation = 24.484206 kcal Electronic energy + Delta-G solvation = -19800.911577 eV Core-core repulsion = 16671.270658 eV Total energy + Delta-G solvation = -3129.640919 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.32904 -38.89865 -37.52582 -34.87782 -33.30460 -32.89685 -30.97009 -30.10927 -29.00348 -28.38915 -24.70843 -23.40647 -22.54437 -22.02116 -20.61171 -19.60272 -18.10442 -17.28913 -16.45925 -16.30040 -15.54238 -15.31525 -15.03850 -14.48058 -14.38065 -14.22248 -14.08006 -13.58094 -12.99211 -12.71594 -12.23908 -12.16288 -12.04304 -11.81108 -11.70271 -11.41061 -11.11742 -10.86160 -10.76079 -10.58897 -10.10756 -9.93821 -9.24582 -8.73059 -8.64832 -8.52944 -8.39728 -8.28082 -6.02665 -4.02416 0.76555 1.33660 2.56429 2.63028 3.36701 3.41903 3.48469 3.64938 3.71239 3.82275 3.98495 4.38119 4.51307 4.78708 4.86381 5.08373 5.15542 5.20276 5.26096 5.29703 5.35664 5.54234 5.60442 5.83943 5.87347 6.16754 6.22038 6.31488 6.33833 6.39613 6.68644 6.93453 7.13025 7.23825 7.37105 7.74968 7.98209 8.08367 8.45002 9.07980 9.19074 9.62231 11.09675 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.034779 B = 0.003429 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.887429 B = 8162.767376 C = 8634.654075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.221 3.779 3 H 0.103 0.897 4 N -0.733 5.733 5 C 0.520 3.480 6 O -0.547 6.547 7 C 0.006 3.994 8 C -0.508 4.508 9 H 0.075 0.925 10 C 0.054 3.946 11 N -0.900 5.900 12 Si 0.901 3.099 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.272 1.272 16 C 0.290 3.710 17 N -0.483 5.483 18 C 0.050 3.950 19 C -0.062 4.062 20 C -0.131 4.131 21 C -0.105 4.105 22 C -0.112 4.112 23 C 0.045 3.955 24 N -0.595 5.595 25 H 0.423 0.577 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.410 0.590 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.261 0.739 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.372 -1.908 23.250 23.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.113 3.887 3 H 0.121 0.879 4 N -0.390 5.390 5 C 0.310 3.690 6 O -0.423 6.423 7 C -0.033 4.033 8 C -0.547 4.547 9 H 0.093 0.907 10 C -0.146 4.146 11 N -0.539 5.539 12 Si 0.729 3.271 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.197 1.197 16 C 0.022 3.978 17 N -0.203 5.203 18 C -0.068 4.068 19 C -0.082 4.082 20 C -0.151 4.151 21 C -0.125 4.125 22 C -0.133 4.133 23 C -0.065 4.065 24 N -0.206 5.206 25 H 0.262 0.738 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.246 0.754 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.522 -1.810 22.371 22.586 hybrid contribution 0.176 1.098 0.127 1.119 sum -2.346 -0.712 22.499 22.632 Atomic orbital electron populations 1.22192 0.93346 1.03182 1.02962 1.19110 0.94321 0.95763 0.79497 0.87929 1.46284 1.69690 1.14854 1.08138 1.22099 0.75127 0.87524 0.84232 1.90526 1.49994 1.16903 1.84922 1.19242 0.98018 0.97233 0.88784 1.21159 1.43463 0.97119 0.92944 0.90671 1.25013 0.95325 0.95362 0.98938 1.69967 1.44732 1.15340 1.23878 0.86432 0.78507 0.80931 0.81223 1.20663 1.21286 1.19689 1.23781 0.97326 0.89433 0.87298 1.70310 1.18979 1.11441 1.19593 1.19125 1.03849 0.93965 0.89869 1.20078 0.97717 0.95885 0.94479 1.20645 1.02195 0.98616 0.93647 1.20869 0.99798 0.91997 0.99810 1.19946 1.03230 0.99273 0.90808 1.18903 1.03923 0.90101 0.93526 1.42959 1.56259 1.12347 1.09026 0.73774 0.92230 0.90138 0.91583 0.75429 0.93286 0.93187 0.92900 0.85165 0.85380 0.85373 0.86035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.47 37.16 0.35 -1.68 16 2 C 0.22 3.24 3.12 -69.08 -0.22 3.02 16 3 H 0.10 1.51 7.58 -51.93 -0.39 1.12 16 4 N -0.73 -13.09 5.07 -54.93 -0.28 -13.37 16 5 C 0.52 11.72 7.79 -10.99 -0.09 11.63 16 6 O -0.55 -13.69 15.12 5.56 0.08 -13.61 16 7 C 0.01 0.17 5.46 -29.03 -0.16 0.01 16 8 C -0.51 -14.77 8.92 -34.44 -0.31 -15.08 16 9 H 0.08 2.26 6.75 -52.49 -0.35 1.90 16 10 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 11 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 12 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 16 C 0.29 3.99 7.08 -154.82 -1.10 2.90 16 17 N -0.48 -7.46 10.43 -8.23 -0.09 -7.54 16 18 C 0.05 0.70 7.23 -84.70 -0.61 0.09 16 19 C -0.06 -0.71 10.05 -39.61 -0.40 -1.11 16 20 C -0.13 -1.17 9.96 -39.97 -0.40 -1.57 16 21 C -0.11 -0.87 10.03 -39.52 -0.40 -1.27 16 22 C -0.11 -1.04 10.07 -39.50 -0.40 -1.44 16 23 C 0.05 0.54 7.31 -83.99 -0.61 -0.07 16 24 N -0.59 -6.56 6.23 -8.00 -0.05 -6.61 16 25 H 0.42 3.23 8.96 -40.82 -0.37 2.86 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.41 7.04 7.95 -40.82 -0.32 6.72 16 30 H 0.05 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 34 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 35 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 315.43 15.07 4.75 4.75 Total: -1.00 -34.04 315.43 -8.66 -42.71 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -4.38 Total: 5.49 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -4.43 Total: -3.10 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.32 Total: -53.42 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.08 Total: -13.61 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.04 -8.66 -42.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201290.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.190 kcal (2) G-P(sol) polarization free energy of solvation -34.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds