Wall clock time and date at job start Mon Mar 30 2020 01:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 5 5 C 1.34769 * 119.99686 * 84.99974 * 4 2 1 6 6 O 1.21275 * 120.00678 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99690 * 179.97438 * 5 4 2 8 8 C 1.50704 * 109.47153 * 179.97438 * 7 5 4 9 9 H 1.07991 * 119.99857 * 0.02562 * 8 7 5 10 10 C 1.37886 * 119.99693 * 179.97438 * 8 7 5 11 11 N 1.31510 * 119.99950 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99530 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47108 * 90.00112 * 12 10 8 14 14 H 1.48498 * 109.46756 * 210.00339 * 12 10 8 15 15 H 1.48501 * 109.47127 * 330.00126 * 12 10 8 16 16 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 17 17 N 1.30110 * 124.95080 * 94.69422 * 16 2 1 18 18 C 1.35783 * 109.64174 * 179.89309 * 17 16 2 19 19 C 1.39747 * 133.59390 * 180.13500 * 18 17 16 20 20 C 1.36608 * 119.88050 * 180.29893 * 19 18 17 21 21 C 1.38775 * 120.66986 * 359.95474 * 20 19 18 22 22 C 1.37858 * 120.45427 * 0.02562 * 21 20 19 23 23 C 1.38841 * 119.68552 * 0.02562 * 22 21 20 24 24 N 1.36034 * 124.94847 * 275.00185 * 16 2 1 25 25 H 0.96997 * 126.35606 * 359.93908 * 24 16 2 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 0.97000 * 119.99634 * 265.00306 * 4 2 1 30 30 H 1.08996 * 109.47353 * 300.00507 * 7 5 4 31 31 H 1.09006 * 109.47337 * 60.00072 * 7 5 4 32 32 H 0.97006 * 119.99281 * 179.97438 * 11 10 8 33 33 H 1.07993 * 120.06326 * 0.27262 * 19 18 17 34 34 H 1.07995 * 119.66435 * 179.97438 * 20 19 18 35 35 H 1.07999 * 119.77625 * 180.02562 * 21 20 19 36 36 H 1.07993 * 120.15944 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1472 -0.0183 -2.3570 6 8 1.8592 1.1585 -2.4115 7 6 2.6501 -0.7285 -3.5873 8 6 2.7001 0.2396 -4.7412 9 1 2.3983 1.2665 -4.5978 10 6 3.1322 -0.1856 -5.9796 11 7 3.5002 -1.4361 -6.1540 12 14 3.1949 1.0147 -7.4096 13 1 4.5260 1.6718 -7.4463 14 1 2.9693 0.2817 -8.6812 15 1 2.1389 2.0446 -7.2380 16 6 2.0323 -0.7104 1.2305 17 7 2.3630 -1.9677 1.2825 18 6 2.7741 -2.2800 2.5384 19 6 3.2319 -3.4564 3.1379 20 6 3.5748 -3.4575 4.4602 21 6 3.4745 -2.2996 5.2185 22 6 3.0259 -1.1275 4.6481 23 6 2.6718 -1.1075 3.3058 24 7 2.2004 -0.1320 2.4502 25 1 2.0220 0.7941 2.6769 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 2.2491 -1.6318 -1.1525 30 1 3.6494 -1.1204 -3.3977 31 1 1.9779 -1.5509 -3.8325 32 1 3.8038 -1.7352 -7.0254 33 1 3.3141 -4.3631 2.5570 34 1 3.9277 -4.3687 4.9201 35 1 3.7499 -2.3168 6.2627 36 1 2.9501 -0.2291 5.2426 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143201290.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:21 Heat of formation + Delta-G solvation = 1.183874 kcal Electronic energy + Delta-G solvation = -19801.921955 eV Core-core repulsion = 16671.270658 eV Total energy + Delta-G solvation = -3130.651297 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.24210 -40.57039 -38.41767 -36.29166 -35.08116 -34.21213 -32.46618 -30.96036 -30.48864 -29.70970 -26.16328 -25.06494 -23.39490 -22.91540 -21.82756 -21.16299 -19.04276 -18.56088 -18.19681 -17.74263 -16.90207 -16.58637 -16.47432 -15.92736 -15.84720 -15.27043 -14.85396 -14.74033 -14.65333 -14.18293 -14.09404 -13.28217 -13.16870 -12.90736 -12.76662 -12.65924 -12.60082 -12.47461 -12.41088 -12.02714 -11.78576 -11.44390 -11.04856 -10.62270 -10.59464 -10.16658 -9.36982 -9.14269 -8.23810 -6.31762 -0.06082 0.55363 1.41272 1.42604 1.54105 1.58886 1.71134 1.85647 2.36090 2.51696 2.90348 2.93661 3.11512 3.53869 3.92130 4.05248 4.13604 4.19605 4.36570 4.40605 4.44215 4.50786 4.64018 4.76534 4.88586 5.09027 5.12350 5.12975 5.25607 5.41456 5.46150 5.54796 5.59296 5.74216 5.96015 6.04517 6.32662 6.64105 6.79679 6.83743 7.32937 7.45354 8.88626 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.034779 B = 0.003429 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.887429 B = 8162.767376 C = 8634.654075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.223 3.777 3 H 0.103 0.897 4 N -0.718 5.718 5 C 0.528 3.472 6 O -0.575 6.575 7 C 0.008 3.992 8 C -0.535 4.535 9 H 0.060 0.940 10 C 0.007 3.993 11 N -0.926 5.926 12 Si 0.967 3.033 13 H -0.272 1.272 14 H -0.275 1.275 15 H -0.271 1.271 16 C 0.278 3.722 17 N -0.516 5.516 18 C 0.009 3.991 19 C -0.086 4.086 20 C -0.122 4.122 21 C -0.096 4.096 22 C -0.114 4.114 23 C 0.037 3.963 24 N -0.580 5.580 25 H 0.438 0.562 26 H 0.093 0.907 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.413 0.587 30 H 0.038 0.962 31 H 0.041 0.959 32 H 0.267 0.733 33 H 0.129 0.871 34 H 0.157 0.843 35 H 0.166 0.834 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.191 -1.428 25.577 25.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.116 3.884 3 H 0.121 0.879 4 N -0.372 5.372 5 C 0.317 3.683 6 O -0.454 6.454 7 C -0.032 4.032 8 C -0.573 4.573 9 H 0.078 0.922 10 C -0.191 4.191 11 N -0.566 5.566 12 Si 0.792 3.208 13 H -0.197 1.197 14 H -0.200 1.200 15 H -0.196 1.196 16 C 0.009 3.991 17 N -0.237 5.237 18 C -0.109 4.109 19 C -0.106 4.106 20 C -0.142 4.142 21 C -0.116 4.116 22 C -0.135 4.135 23 C -0.073 4.073 24 N -0.193 5.193 25 H 0.280 0.720 26 H 0.111 0.889 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.250 0.750 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.147 0.853 34 H 0.175 0.825 35 H 0.183 0.817 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.347 -1.340 24.750 24.898 hybrid contribution 0.165 0.837 -0.417 0.949 sum -2.183 -0.503 24.334 24.437 Atomic orbital electron populations 1.22116 0.91795 1.03256 1.03682 1.19223 0.95458 0.95326 0.78440 0.87898 1.45988 1.68260 1.14831 1.08153 1.21365 0.75246 0.86899 0.84784 1.90502 1.51546 1.17764 1.85543 1.19073 0.97373 0.96692 0.90042 1.21379 1.44257 0.97057 0.94610 0.92167 1.25849 0.94591 0.97183 1.01504 1.70056 1.44922 1.16841 1.24819 0.85410 0.78729 0.78690 0.77989 1.19729 1.20009 1.19563 1.23325 0.98622 0.89366 0.87788 1.70190 1.19873 1.12438 1.21210 1.19551 1.05701 0.95780 0.89841 1.20319 0.98986 0.95446 0.95856 1.21053 1.00401 1.00229 0.92556 1.21383 0.97750 0.91058 1.01386 1.20385 1.02378 1.00955 0.89781 1.19230 1.04143 0.89467 0.94486 1.42787 1.55540 1.13004 1.07944 0.71968 0.88862 0.91971 0.91805 0.75032 0.94439 0.94054 0.92424 0.85321 0.82490 0.81679 0.83137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.47 71.98 0.68 -3.10 16 2 C 0.22 6.53 3.12 44.25 0.14 6.67 16 3 H 0.10 3.03 7.58 -2.39 -0.02 3.01 16 4 N -0.72 -26.38 5.07 -446.09 -2.26 -28.64 16 5 C 0.53 24.57 7.79 87.66 0.68 25.25 16 6 O -0.57 -29.49 15.12 -3.01 -0.05 -29.54 16 7 C 0.01 0.41 5.46 29.10 0.16 0.57 16 8 C -0.53 -31.91 8.92 25.60 0.23 -31.68 16 9 H 0.06 3.72 6.75 -2.92 -0.02 3.70 16 10 C 0.01 0.42 5.46 84.66 0.46 0.88 16 11 N -0.93 -55.49 13.29 21.45 0.28 -55.21 16 12 Si 0.97 45.75 29.54 68.60 2.03 47.78 16 13 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 14 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 15 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 16 C 0.28 7.60 7.08 137.92 0.98 8.58 16 17 N -0.52 -16.20 10.43 -179.97 -1.88 -18.08 16 18 C 0.01 0.25 7.23 39.45 0.29 0.54 16 19 C -0.09 -1.94 10.05 22.25 0.22 -1.71 16 20 C -0.12 -1.87 9.96 22.02 0.22 -1.65 16 21 C -0.10 -1.23 10.03 22.31 0.22 -1.00 16 22 C -0.11 -1.76 10.07 22.32 0.22 -1.54 16 23 C 0.04 0.82 7.31 38.86 0.28 1.11 16 24 N -0.58 -12.09 6.23 -179.23 -1.12 -13.21 16 25 H 0.44 5.89 8.96 -92.71 -0.83 5.06 16 26 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.41 14.77 7.95 -92.71 -0.74 14.03 16 30 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.04 2.24 8.14 -2.38 -0.02 2.22 16 32 H 0.27 14.96 8.31 -92.70 -0.77 14.19 16 33 H 0.13 2.73 8.06 -2.91 -0.02 2.70 16 34 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 35 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 36 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -74.97 315.43 1.35 -73.62 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -0.45 Total: 20.36 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 4.79 Total: 2.90 kcal Atomic # 7 Polarization: -110.16 SS G_CDS: -4.97 Total: -115.13 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.05 Total: -29.54 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -74.97 1.35 -73.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201290.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.806 kcal (2) G-P(sol) polarization free energy of solvation -74.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds