Wall clock time and date at job start Mon Mar 30 2020 01:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.39875 * 125.46127 * 2 1 4 4 C 1.30234 * 110.09153 * 179.84283 * 3 2 1 5 5 C 1.45934 * 107.78893 * 0.41212 * 4 3 2 6 6 C 1.37040 * 125.45746 * 180.31184 * 2 1 3 7 7 C 1.39241 * 133.86101 * 359.97438 * 6 2 1 8 8 C 1.36626 * 119.85747 * 180.02562 * 7 6 2 9 9 C 1.38922 * 120.81428 * 359.96707 * 8 7 6 10 10 C 1.36506 * 120.62621 * 0.02562 * 9 8 7 11 11 C 1.50697 * 120.18102 * 179.97438 * 10 9 8 12 12 N 1.46497 * 109.47221 * 260.02669 * 11 10 9 13 13 C 1.34782 * 119.99943 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99912 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99929 * 180.02562 * 13 12 11 16 16 C 1.50697 * 109.47207 * 179.97438 * 15 13 12 17 17 H 1.07999 * 119.99680 * 359.97438 * 16 15 13 18 18 C 1.37875 * 119.99928 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00117 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99778 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47200 * 60.00492 * 20 18 16 22 22 H 1.48501 * 109.46877 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47208 * 300.00306 * 20 18 16 24 24 H 1.08999 * 109.46892 * 269.69181 * 1 2 3 25 25 H 1.09000 * 109.46803 * 29.68354 * 1 2 3 26 26 H 1.09000 * 109.47214 * 149.69148 * 1 2 3 27 27 H 1.08004 * 126.10597 * 180.13704 * 4 3 2 28 28 H 1.08007 * 120.07323 * 0.02562 * 7 6 2 29 29 H 1.08000 * 119.59293 * 179.97438 * 8 7 6 30 30 H 1.07999 * 119.68776 * 180.02562 * 9 8 7 31 31 H 1.09000 * 109.47172 * 20.02516 * 11 10 9 32 32 H 1.08997 * 109.47220 * 140.02487 * 11 10 9 33 33 H 0.96998 * 120.00268 * 359.97438 * 12 11 10 34 34 H 1.09000 * 109.46924 * 299.99614 * 15 13 12 35 35 H 1.08997 * 109.47184 * 59.99411 * 15 13 12 36 36 H 0.97000 * 119.99831 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2765 1.1393 0.0000 4 6 3.5323 0.7941 0.0034 5 6 3.5939 -0.6639 -0.0042 6 6 2.2600 -1.1162 -0.0061 7 6 2.0019 -2.4845 -0.0131 8 6 3.0402 -3.3725 -0.0175 9 6 4.3565 -2.9283 -0.0158 10 6 4.6399 -1.5930 -0.0092 11 6 6.0714 -1.1223 -0.0068 12 7 6.4606 -0.7493 1.3554 13 6 7.7060 -0.2956 1.6001 14 8 8.5045 -0.1966 0.6926 15 6 8.1065 0.0875 3.0014 16 6 9.5381 0.5583 3.0038 17 1 10.1016 0.5777 2.0826 18 6 10.1283 0.9643 4.1818 19 7 9.4422 0.9402 5.3035 20 14 11.9030 1.5472 4.1847 21 1 12.0386 2.7254 3.2910 22 1 12.2977 1.9249 5.5657 23 1 12.7839 0.4544 3.7001 24 1 -0.3633 -0.0055 1.0277 25 1 -0.3633 0.8928 -0.5089 26 1 -0.3633 -0.8872 -0.5186 27 1 4.3773 1.4668 0.0063 28 1 0.9831 -2.8431 -0.0150 29 1 2.8352 -4.4328 -0.0225 30 1 5.1633 -3.6463 -0.0199 31 1 6.7182 -1.9243 -0.3627 32 1 6.1706 -0.2574 -0.6627 33 1 5.8219 -0.8282 2.0811 34 1 7.4595 0.8890 3.3579 35 1 8.0079 -0.7777 3.6569 36 1 9.8577 1.2254 6.1323 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143205466.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:50 Heat of formation + Delta-G solvation = 46.804323 kcal Electronic energy + Delta-G solvation = -19798.483582 eV Core-core repulsion = 16669.810536 eV Total energy + Delta-G solvation = -3128.673046 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.44005 -38.71112 -37.49491 -34.60182 -33.29148 -32.88292 -30.96778 -29.99913 -28.85997 -26.72376 -25.89724 -23.34731 -22.46648 -22.19719 -20.17000 -19.59857 -17.24208 -17.01866 -16.34128 -15.83208 -15.70537 -15.47372 -15.04420 -14.74406 -14.35844 -14.14227 -13.87785 -13.26850 -13.13788 -12.87816 -12.60006 -12.47362 -12.03045 -11.92082 -11.82812 -11.15254 -11.09266 -10.90837 -10.76196 -10.55485 -10.15643 -9.92616 -9.24812 -8.88608 -8.60024 -8.46480 -8.36465 -7.98593 -6.02105 -4.01607 0.73246 1.34697 2.22590 2.38329 3.40178 3.42122 3.46676 3.52085 3.75652 4.15728 4.25426 4.37014 4.53399 4.59861 4.76438 4.89986 4.99203 5.07391 5.12387 5.16228 5.35101 5.36801 5.54901 5.72852 5.79203 5.91501 6.20851 6.30545 6.40760 6.50442 6.64152 6.87123 7.04992 7.23464 7.37396 7.47954 7.99365 8.09660 8.47583 9.09021 9.26395 9.63334 11.10253 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029014 B = 0.003614 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.826422 B = 7746.128958 C = 8156.791087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.414 5.414 3 N -0.255 5.255 4 C 0.084 3.916 5 C -0.166 4.166 6 C 0.125 3.875 7 C -0.142 4.142 8 C -0.068 4.068 9 C -0.145 4.145 10 C -0.016 4.016 11 C 0.157 3.843 12 N -0.743 5.743 13 C 0.515 3.485 14 O -0.546 6.546 15 C 0.006 3.994 16 C -0.508 4.508 17 H 0.075 0.925 18 C 0.054 3.946 19 N -0.901 5.901 20 Si 0.902 3.098 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.276 1.276 24 H 0.068 0.932 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.198 0.802 28 H 0.123 0.877 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.397 0.603 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.803 -7.293 -10.187 23.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.203 5.203 3 N -0.066 5.066 4 C -0.114 4.114 5 C -0.175 4.175 6 C 0.011 3.989 7 C -0.164 4.164 8 C -0.089 4.089 9 C -0.165 4.165 10 C -0.019 4.019 11 C 0.033 3.967 12 N -0.398 5.398 13 C 0.305 3.695 14 O -0.422 6.422 15 C -0.034 4.034 16 C -0.547 4.547 17 H 0.093 0.907 18 C -0.146 4.146 19 N -0.541 5.541 20 Si 0.730 3.270 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.201 1.201 24 H 0.087 0.913 25 H 0.105 0.895 26 H 0.100 0.900 27 H 0.215 0.785 28 H 0.141 0.859 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.231 0.769 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.206 -6.152 -10.666 23.662 hybrid contribution 0.886 -0.399 0.495 1.091 sum -19.320 -6.551 -10.171 22.795 Atomic orbital electron populations 1.21705 0.74321 1.03998 1.02922 1.48177 1.05778 1.01174 1.65158 1.76636 1.02738 1.08621 1.18632 1.25176 0.94559 0.93268 0.98361 1.19745 0.92450 0.93270 1.12010 1.18796 0.90692 0.89564 0.99863 1.19782 0.99899 0.88807 1.07918 1.20709 0.92032 0.99372 0.96741 1.20669 0.96895 0.94803 1.04130 1.19265 0.93888 0.92365 0.96361 1.20079 0.89626 1.00464 0.86483 1.46355 1.15134 1.69664 1.08655 1.22030 0.79521 0.74273 0.93633 1.90538 1.50914 1.53227 1.47494 1.19232 0.98736 0.98487 0.86905 1.21135 0.95928 1.42630 0.94966 0.90717 1.25006 0.98441 0.95779 0.95387 1.69953 1.36975 1.48372 0.98814 0.86488 0.84513 0.79331 0.76702 1.20120 1.21411 1.20136 0.91309 0.89546 0.90004 0.78535 0.85949 0.85218 0.85210 0.90948 0.91027 0.76941 0.93453 0.93472 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.80 11.40 59.85 0.68 1.49 16 2 N -0.41 -4.88 4.05 -65.47 -0.27 -5.14 16 3 N -0.25 -3.47 12.40 31.87 0.40 -3.08 16 4 C 0.08 1.10 12.15 -15.15 -0.18 0.92 16 5 C -0.17 -2.17 6.15 -105.21 -0.65 -2.82 16 6 C 0.13 1.51 6.87 -84.18 -0.58 0.93 16 7 C -0.14 -1.36 9.97 -39.79 -0.40 -1.76 16 8 C -0.07 -0.62 9.96 -39.91 -0.40 -1.02 16 9 C -0.14 -1.55 9.59 -39.95 -0.38 -1.93 16 10 C -0.02 -0.20 5.25 -104.63 -0.55 -0.75 16 11 C 0.16 2.29 5.72 -5.20 -0.03 2.26 16 12 N -0.74 -12.68 5.55 -61.47 -0.34 -13.02 16 13 C 0.52 11.61 7.82 -10.98 -0.09 11.52 16 14 O -0.55 -14.06 15.46 5.56 0.09 -13.98 16 15 C 0.01 0.14 5.46 -29.04 -0.16 -0.02 16 16 C -0.51 -14.81 8.92 -34.44 -0.31 -15.12 16 17 H 0.07 2.26 6.75 -52.49 -0.35 1.91 16 18 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -26.62 13.29 55.43 0.74 -25.89 16 20 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.20 2.30 8.06 -52.48 -0.42 1.87 16 28 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 29 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.13 1.23 8.01 -52.49 -0.42 0.81 16 31 H 0.07 1.06 7.99 -51.93 -0.41 0.65 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.40 6.11 8.46 -40.82 -0.35 5.77 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 318.87 15.07 4.81 4.81 Total: -1.00 -34.72 318.87 -7.21 -41.93 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -4.48 Total: 1.92 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -3.13 Total: -4.81 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.53 Total: -47.12 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.09 Total: -13.98 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.72 -7.21 -41.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205466.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.738 kcal (2) G-P(sol) polarization free energy of solvation -34.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds