Wall clock time and date at job start Mon Mar 30 2020 01:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.39875 * 125.46127 * 2 1 4 4 C 1.30234 * 110.09153 * 179.84283 * 3 2 1 5 5 C 1.45934 * 107.78893 * 0.41212 * 4 3 2 6 6 C 1.37040 * 125.45746 * 180.31184 * 2 1 3 7 7 C 1.39241 * 133.86101 * 359.97438 * 6 2 1 8 8 C 1.36626 * 119.85747 * 180.02562 * 7 6 2 9 9 C 1.38922 * 120.81428 * 359.96707 * 8 7 6 10 10 C 1.36506 * 120.62621 * 0.02562 * 9 8 7 11 11 C 1.50697 * 120.18102 * 179.97438 * 10 9 8 12 12 N 1.46497 * 109.47221 * 260.02669 * 11 10 9 13 13 C 1.34782 * 119.99943 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99912 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99929 * 180.02562 * 13 12 11 16 16 C 1.50697 * 109.47207 * 179.97438 * 15 13 12 17 17 H 1.07999 * 119.99680 * 359.97438 * 16 15 13 18 18 C 1.37875 * 119.99928 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00117 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99778 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47200 * 60.00492 * 20 18 16 22 22 H 1.48501 * 109.46877 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47208 * 300.00306 * 20 18 16 24 24 H 1.08999 * 109.46892 * 269.69181 * 1 2 3 25 25 H 1.09000 * 109.46803 * 29.68354 * 1 2 3 26 26 H 1.09000 * 109.47214 * 149.69148 * 1 2 3 27 27 H 1.08004 * 126.10597 * 180.13704 * 4 3 2 28 28 H 1.08007 * 120.07323 * 0.02562 * 7 6 2 29 29 H 1.08000 * 119.59293 * 179.97438 * 8 7 6 30 30 H 1.07999 * 119.68776 * 180.02562 * 9 8 7 31 31 H 1.09000 * 109.47172 * 20.02516 * 11 10 9 32 32 H 1.08997 * 109.47220 * 140.02487 * 11 10 9 33 33 H 0.96998 * 120.00268 * 359.97438 * 12 11 10 34 34 H 1.09000 * 109.46924 * 299.99614 * 15 13 12 35 35 H 1.08997 * 109.47184 * 59.99411 * 15 13 12 36 36 H 0.97000 * 119.99831 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2765 1.1393 0.0000 4 6 3.5323 0.7941 0.0034 5 6 3.5939 -0.6639 -0.0042 6 6 2.2600 -1.1162 -0.0061 7 6 2.0019 -2.4845 -0.0131 8 6 3.0402 -3.3725 -0.0175 9 6 4.3565 -2.9283 -0.0158 10 6 4.6399 -1.5930 -0.0092 11 6 6.0714 -1.1223 -0.0068 12 7 6.4606 -0.7493 1.3554 13 6 7.7060 -0.2956 1.6001 14 8 8.5045 -0.1966 0.6926 15 6 8.1065 0.0875 3.0014 16 6 9.5381 0.5583 3.0038 17 1 10.1016 0.5777 2.0826 18 6 10.1283 0.9643 4.1818 19 7 9.4422 0.9402 5.3035 20 14 11.9030 1.5472 4.1847 21 1 12.0386 2.7254 3.2910 22 1 12.2977 1.9249 5.5657 23 1 12.7839 0.4544 3.7001 24 1 -0.3633 -0.0055 1.0277 25 1 -0.3633 0.8928 -0.5089 26 1 -0.3633 -0.8872 -0.5186 27 1 4.3773 1.4668 0.0063 28 1 0.9831 -2.8431 -0.0150 29 1 2.8352 -4.4328 -0.0225 30 1 5.1633 -3.6463 -0.0199 31 1 6.7182 -1.9243 -0.3627 32 1 6.1706 -0.2574 -0.6627 33 1 5.8219 -0.8282 2.0811 34 1 7.4595 0.8890 3.3579 35 1 8.0079 -0.7777 3.6569 36 1 9.8577 1.2254 6.1323 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143205466.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:49 Heat of formation + Delta-G solvation = 23.298985 kcal Electronic energy + Delta-G solvation = -19799.502850 eV Core-core repulsion = 16669.810536 eV Total energy + Delta-G solvation = -3129.692314 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.31193 -40.39011 -38.47219 -35.88101 -35.06656 -34.27217 -32.15598 -30.87543 -30.71425 -27.43847 -27.26067 -25.21592 -23.46019 -23.04587 -21.37496 -21.02890 -18.51607 -18.21601 -17.90132 -17.34107 -16.84071 -16.50919 -16.40622 -16.17847 -15.96180 -15.30347 -14.82468 -14.52795 -14.25137 -14.00804 -13.85726 -13.81610 -13.43606 -13.08749 -12.80874 -12.72144 -12.65662 -12.51034 -12.04760 -11.98447 -11.81826 -11.44459 -11.06130 -10.60773 -10.49918 -9.97601 -9.65075 -8.84176 -8.23028 -6.30414 -0.13517 0.50878 1.41819 1.44917 1.44978 1.48017 1.53501 1.92358 2.35199 2.50841 2.95429 3.12370 3.37158 3.58107 3.76184 3.95412 4.16960 4.30821 4.33749 4.39061 4.42935 4.48017 4.66327 4.70695 4.81933 4.90539 5.02662 5.11184 5.28786 5.37067 5.49598 5.54178 5.62869 5.75704 5.83560 6.07881 6.11284 6.57290 6.71676 6.85997 7.35738 7.53275 8.88959 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029014 B = 0.003614 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.826422 B = 7746.128958 C = 8156.791087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.416 5.416 3 N -0.279 5.279 4 C 0.066 3.934 5 C -0.187 4.187 6 C 0.110 3.890 7 C -0.133 4.133 8 C -0.064 4.064 9 C -0.141 4.141 10 C -0.033 4.033 11 C 0.162 3.838 12 N -0.720 5.720 13 C 0.521 3.479 14 O -0.582 6.582 15 C 0.008 3.992 16 C -0.537 4.537 17 H 0.057 0.943 18 C 0.009 3.991 19 N -0.926 5.926 20 Si 0.965 3.035 21 H -0.272 1.272 22 H -0.275 1.275 23 H -0.271 1.271 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.109 0.891 27 H 0.198 0.802 28 H 0.156 0.844 29 H 0.167 0.833 30 H 0.143 0.857 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.407 0.593 34 H 0.040 0.960 35 H 0.041 0.959 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.244 -8.928 -10.442 25.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.205 5.205 3 N -0.092 5.092 4 C -0.131 4.131 5 C -0.195 4.195 6 C -0.005 4.005 7 C -0.154 4.154 8 C -0.084 4.084 9 C -0.161 4.161 10 C -0.036 4.036 11 C 0.039 3.961 12 N -0.373 5.373 13 C 0.311 3.689 14 O -0.462 6.462 15 C -0.032 4.032 16 C -0.575 4.575 17 H 0.075 0.925 18 C -0.189 4.189 19 N -0.566 5.566 20 Si 0.789 3.211 21 H -0.197 1.197 22 H -0.200 1.200 23 H -0.196 1.196 24 H 0.097 0.903 25 H 0.109 0.891 26 H 0.128 0.872 27 H 0.214 0.786 28 H 0.174 0.826 29 H 0.184 0.816 30 H 0.160 0.840 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.242 0.758 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.711 -7.800 -10.917 25.523 hybrid contribution 1.173 0.039 0.561 1.301 sum -20.539 -7.762 -10.356 24.276 Atomic orbital electron populations 1.22072 0.71972 1.05667 1.04130 1.48529 1.07069 1.00559 1.64363 1.76544 1.03172 1.10187 1.19255 1.25273 0.94719 0.93936 0.99146 1.19896 0.93494 0.93119 1.13007 1.19168 0.90264 0.90681 1.00345 1.20228 1.01822 0.87524 1.05867 1.21111 0.90881 1.01186 0.95213 1.20954 0.98456 0.94066 1.02590 1.19036 0.92119 0.93261 0.99175 1.20121 0.91485 1.00241 0.84254 1.46035 1.13293 1.67454 1.10481 1.21395 0.80893 0.74640 0.92006 1.90515 1.52483 1.55237 1.47974 1.19072 0.97281 0.97881 0.88941 1.21366 0.97710 1.43764 0.94652 0.92485 1.25802 1.02682 0.95561 0.94886 1.70033 1.38645 1.48601 0.99299 0.85507 0.79378 0.78891 0.77302 1.19739 1.19998 1.19632 0.90287 0.89074 0.87220 0.78555 0.82640 0.81594 0.83965 0.90769 0.91763 0.75755 0.94213 0.94058 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.23 11.40 127.77 1.46 2.69 16 2 N -0.42 -9.24 4.05 -361.04 -1.46 -10.70 16 3 N -0.28 -7.65 12.40 -53.09 -0.66 -8.31 16 4 C 0.07 1.79 12.15 86.92 1.06 2.84 16 5 C -0.19 -4.79 6.15 -20.24 -0.12 -4.92 16 6 C 0.11 2.45 6.87 39.21 0.27 2.72 16 7 C -0.13 -2.05 9.97 22.13 0.22 -1.83 16 8 C -0.06 -0.91 9.96 22.06 0.22 -0.69 16 9 C -0.14 -2.66 9.59 22.03 0.21 -2.45 16 10 C -0.03 -0.80 5.25 -19.87 -0.10 -0.90 16 11 C 0.16 4.73 5.72 85.63 0.49 5.22 16 12 N -0.72 -24.81 5.55 -466.79 -2.59 -27.40 16 13 C 0.52 24.08 7.82 87.66 0.69 24.77 16 14 O -0.58 -30.85 15.46 -3.03 -0.05 -30.90 16 15 C 0.01 0.40 5.46 29.10 0.16 0.56 16 16 C -0.54 -32.02 8.92 25.60 0.23 -31.80 16 17 H 0.06 3.55 6.75 -2.91 -0.02 3.53 16 18 C 0.01 0.53 5.46 84.65 0.46 0.99 16 19 N -0.93 -54.96 13.29 21.45 0.28 -54.67 16 20 Si 0.96 45.78 29.54 68.60 2.03 47.80 16 21 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 23 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 24 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 25 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.20 4.95 8.06 -2.91 -0.02 4.93 16 28 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 29 H 0.17 1.19 8.06 -2.91 -0.02 1.16 16 30 H 0.14 2.30 8.01 -2.91 -0.02 2.28 16 31 H 0.07 2.16 7.99 -2.39 -0.02 2.14 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.41 12.55 8.46 -92.71 -0.78 11.77 16 34 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.27 14.88 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -75.70 318.87 3.10 -72.60 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.32 Total: 14.38 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 5.23 Total: -2.79 kcal Atomic # 7 Polarization: -96.66 SS G_CDS: -4.43 Total: -101.09 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -0.05 Total: -30.90 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -75.70 3.10 -72.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205466.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.897 kcal (2) G-P(sol) polarization free energy of solvation -75.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds