Wall clock time and date at job start Mon Mar 30 2020 01:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36142 * 126.34854 * 2 1 4 4 N 1.30079 * 110.08980 * 179.97438 * 3 2 1 5 5 C 1.35856 * 109.65595 * 0.02562 * 4 3 2 6 6 C 1.39787 * 133.48997 * 179.97438 * 5 4 3 7 7 C 1.36502 * 119.97733 * 180.02562 * 6 5 4 8 8 C 1.39363 * 120.59961 * 0.28037 * 7 6 5 9 9 N 1.40018 * 119.85283 * 179.70259 * 8 7 6 10 10 C 1.34772 * 120.00495 * 213.34853 * 9 8 7 11 11 O 1.21290 * 119.99719 * 5.27254 * 10 9 8 12 12 C 1.50698 * 120.00639 * 185.26739 * 10 9 8 13 13 C 1.52996 * 109.47536 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47034 * 180.02562 * 13 12 10 15 15 H 1.07996 * 120.00253 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99718 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00224 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99744 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47359 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47220 * 119.99905 * 18 16 14 21 21 H 1.48505 * 109.47404 * 239.99983 * 18 16 14 22 22 C 1.38461 * 120.30000 * 359.42154 * 8 7 6 23 23 C 1.38068 * 126.35651 * 179.97438 * 2 1 3 24 24 H 1.09006 * 109.46528 * 270.01954 * 1 2 3 25 25 H 1.08999 * 109.47683 * 30.02101 * 1 2 3 26 26 H 1.09006 * 109.46893 * 150.02448 * 1 2 3 27 27 H 1.07989 * 124.95658 * 359.97438 * 3 2 1 28 28 H 1.07997 * 120.00963 * 359.97438 * 6 5 4 29 29 H 1.07995 * 119.69728 * 180.02562 * 7 6 5 30 30 H 0.97007 * 120.00051 * 33.34460 * 9 8 7 31 31 H 1.08999 * 109.47091 * 300.00583 * 12 10 9 32 32 H 1.09003 * 109.46347 * 59.99830 * 12 10 9 33 33 H 1.08999 * 109.47542 * 300.00473 * 13 12 10 34 34 H 1.09000 * 109.46817 * 60.00465 * 13 12 10 35 35 H 0.97000 * 120.00314 * 180.02562 * 17 16 14 36 36 H 1.08000 * 120.18411 * 180.28079 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2719 1.0965 0.0000 4 7 3.5207 0.7323 0.0005 5 6 3.6012 -0.6238 0.0004 6 6 4.6706 -1.5241 0.0003 7 6 4.4308 -2.8679 -0.0004 8 6 3.1253 -3.3556 -0.0070 9 7 2.8974 -4.7371 -0.0139 10 6 1.8279 -5.2405 -0.6613 11 8 1.1166 -4.5091 -1.3173 12 6 1.5158 -6.7120 -0.5704 13 6 0.2605 -7.0187 -1.3895 14 6 -0.0519 -8.4902 -1.2980 15 1 0.5818 -9.1415 -0.7144 16 6 -1.1461 -9.0051 -1.9604 17 7 -1.9175 -8.2121 -2.6715 18 14 -1.5329 -10.8290 -1.8475 19 1 -0.5202 -11.4978 -0.9918 20 1 -2.8814 -11.0133 -1.2536 21 1 -1.5050 -11.4261 -3.2070 22 6 2.0525 -2.4803 -0.0008 23 6 2.2835 -1.1119 0.0005 24 1 -0.3632 0.0004 1.0278 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3633 -0.8903 -0.5135 27 1 1.9258 2.1194 -0.0004 28 1 5.6861 -1.1565 0.0000 29 1 5.2604 -3.5594 -0.0001 30 1 3.5094 -5.3320 0.4472 31 1 2.3552 -7.2863 -0.9623 32 1 1.3448 -6.9833 0.4713 33 1 -0.5787 -6.4444 -0.9973 34 1 0.4312 -6.7473 -2.4313 35 1 -2.6875 -8.5742 -3.1371 36 1 1.0416 -2.8603 -0.0013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156786233.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:55 Heat of formation + Delta-G solvation = 33.219634 kcal Electronic energy + Delta-G solvation = -19811.003615 eV Core-core repulsion = 16681.741493 eV Total energy + Delta-G solvation = -3129.262122 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.11401 -39.85760 -37.23459 -34.49923 -33.64485 -33.52521 -31.13131 -30.45850 -28.46492 -27.04478 -25.75387 -23.58825 -22.39041 -21.27232 -20.79142 -19.71871 -17.84223 -17.33869 -16.78926 -16.15232 -15.86740 -15.64844 -15.09042 -14.68752 -14.43322 -13.89006 -13.84049 -13.40705 -13.33882 -12.93951 -12.75198 -12.53146 -12.22201 -11.87616 -11.58066 -11.23001 -10.98914 -10.62891 -10.44900 -10.09463 -10.03408 -9.79719 -9.70211 -9.25046 -9.09735 -8.38175 -8.29319 -7.62359 -6.01695 -4.06241 0.97088 1.48692 2.53668 2.69371 3.12807 3.29301 3.33607 3.37586 3.40816 3.91715 4.23605 4.43011 4.52259 4.59062 4.98356 5.05467 5.22574 5.28958 5.29710 5.33737 5.35217 5.49031 5.67711 6.04263 6.11047 6.11642 6.25790 6.35369 6.45601 6.60087 6.79433 7.00837 7.07363 7.66327 7.68746 7.77375 7.81961 7.99807 8.30988 8.56297 9.01929 9.57807 11.09255 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.032946 B = 0.003470 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.674548 B = 8066.753930 C = 8782.274849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.496 5.496 3 C 0.249 3.751 4 N -0.495 5.495 5 C 0.021 3.979 6 C -0.047 4.047 7 C -0.150 4.150 8 C 0.173 3.827 9 N -0.683 5.683 10 C 0.509 3.491 11 O -0.514 6.514 12 C -0.129 4.129 13 C 0.036 3.964 14 C -0.528 4.528 15 H 0.057 0.943 16 C 0.058 3.942 17 N -0.889 5.889 18 Si 0.893 3.107 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.120 4.120 23 C 0.070 3.930 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.211 0.789 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.411 0.589 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.261 0.739 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.368 15.318 8.082 19.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.187 5.187 3 C -0.037 4.037 4 N -0.214 5.214 5 C -0.097 4.097 6 C -0.067 4.067 7 C -0.172 4.172 8 C 0.076 3.924 9 N -0.329 5.329 10 C 0.298 3.702 11 O -0.388 6.388 12 C -0.169 4.169 13 C -0.001 4.001 14 C -0.566 4.566 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.144 4.144 23 C -0.040 4.040 24 H 0.092 0.908 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.227 0.773 28 H 0.149 0.851 29 H 0.150 0.850 30 H 0.246 0.754 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.042 0.958 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.196 16.291 7.480 20.148 hybrid contribution -0.840 -1.700 0.178 1.904 sum 8.356 14.592 7.659 18.477 Atomic orbital electron populations 1.22016 0.75931 1.05034 1.03472 1.45269 1.07363 1.05432 1.60616 1.25245 0.85243 0.93224 0.99993 1.70379 1.18280 1.11064 1.21690 1.18997 0.92171 0.90184 1.08319 1.19733 0.97341 0.90759 0.98855 1.20427 0.95137 0.95345 1.06269 1.17356 0.92530 0.83619 0.98901 1.43936 1.29397 1.04927 1.54675 1.21852 0.78800 0.92513 0.76989 1.90679 1.48043 1.61328 1.38723 1.21914 1.03437 0.87946 1.03594 1.18920 0.89881 0.96199 0.95125 1.21238 1.11101 0.93439 1.30805 0.92459 1.25026 0.96218 0.97898 0.95241 1.70000 1.16229 1.34893 1.31684 0.86524 0.78224 0.85331 0.77818 1.19704 1.21011 1.20985 1.19812 1.00083 0.88373 1.06148 1.18635 0.90979 0.89063 1.05300 0.90761 0.89380 0.89277 0.77252 0.85097 0.84988 0.75356 0.89795 0.89727 0.95807 0.95718 0.92967 0.84582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 11.18 59.85 0.67 1.31 16 2 N -0.50 -5.91 3.21 -123.17 -0.40 -6.30 16 3 C 0.25 2.70 12.50 -89.71 -1.12 1.58 16 4 N -0.50 -6.96 11.27 -12.00 -0.14 -7.10 16 5 C 0.02 0.31 7.23 -84.65 -0.61 -0.30 16 6 C -0.05 -0.60 10.04 -39.63 -0.40 -1.00 16 7 C -0.15 -1.83 9.87 -39.79 -0.39 -2.22 16 8 C 0.17 2.53 6.28 -83.62 -0.52 2.01 16 9 N -0.68 -9.62 5.34 -9.82 -0.05 -9.67 16 10 C 0.51 9.39 7.56 -10.99 -0.08 9.31 16 11 O -0.51 -11.57 13.68 5.55 0.08 -11.49 16 12 C -0.13 -2.48 5.64 -27.89 -0.16 -2.64 16 13 C 0.04 0.94 4.26 -27.88 -0.12 0.83 16 14 C -0.53 -14.60 9.11 -34.44 -0.31 -14.92 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 18 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C -0.12 -1.92 8.65 -39.30 -0.34 -2.26 16 23 C 0.07 1.04 6.87 -84.00 -0.58 0.47 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.21 1.21 8.06 -52.49 -0.42 0.79 16 28 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 29 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 30 H 0.41 4.20 8.82 -40.82 -0.36 3.84 16 31 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 34 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.14 2.39 6.42 -52.49 -0.34 2.06 16 LS Contribution 314.67 15.07 4.74 4.74 Total: -1.00 -36.19 314.67 -8.58 -44.77 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -4.46 Total: 1.24 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -4.07 Total: -6.28 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 0.15 Total: -49.26 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.08 Total: -11.49 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -36.19 -8.58 -44.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156786233.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.990 kcal (2) G-P(sol) polarization free energy of solvation -36.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds