Wall clock time and date at job start Mon Mar 30 2020 01:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36142 * 126.34854 * 2 1 4 4 N 1.30079 * 110.08980 * 179.97438 * 3 2 1 5 5 C 1.35856 * 109.65595 * 0.02562 * 4 3 2 6 6 C 1.39787 * 133.48997 * 179.97438 * 5 4 3 7 7 C 1.36502 * 119.97733 * 180.02562 * 6 5 4 8 8 C 1.39363 * 120.59961 * 0.28037 * 7 6 5 9 9 N 1.40018 * 119.85283 * 179.70259 * 8 7 6 10 10 C 1.34772 * 120.00495 * 213.34853 * 9 8 7 11 11 O 1.21290 * 119.99719 * 5.27254 * 10 9 8 12 12 C 1.50698 * 120.00639 * 185.26739 * 10 9 8 13 13 C 1.52996 * 109.47536 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47034 * 180.02562 * 13 12 10 15 15 H 1.07996 * 120.00253 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99718 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00224 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99744 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47359 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47220 * 119.99905 * 18 16 14 21 21 H 1.48505 * 109.47404 * 239.99983 * 18 16 14 22 22 C 1.38461 * 120.30000 * 359.42154 * 8 7 6 23 23 C 1.38068 * 126.35651 * 179.97438 * 2 1 3 24 24 H 1.09006 * 109.46528 * 270.01954 * 1 2 3 25 25 H 1.08999 * 109.47683 * 30.02101 * 1 2 3 26 26 H 1.09006 * 109.46893 * 150.02448 * 1 2 3 27 27 H 1.07989 * 124.95658 * 359.97438 * 3 2 1 28 28 H 1.07997 * 120.00963 * 359.97438 * 6 5 4 29 29 H 1.07995 * 119.69728 * 180.02562 * 7 6 5 30 30 H 0.97007 * 120.00051 * 33.34460 * 9 8 7 31 31 H 1.08999 * 109.47091 * 300.00583 * 12 10 9 32 32 H 1.09003 * 109.46347 * 59.99830 * 12 10 9 33 33 H 1.08999 * 109.47542 * 300.00473 * 13 12 10 34 34 H 1.09000 * 109.46817 * 60.00465 * 13 12 10 35 35 H 0.97000 * 120.00314 * 180.02562 * 17 16 14 36 36 H 1.08000 * 120.18411 * 180.28079 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2719 1.0965 0.0000 4 7 3.5207 0.7323 0.0005 5 6 3.6012 -0.6238 0.0004 6 6 4.6706 -1.5241 0.0003 7 6 4.4308 -2.8679 -0.0004 8 6 3.1253 -3.3556 -0.0070 9 7 2.8974 -4.7371 -0.0139 10 6 1.8279 -5.2405 -0.6613 11 8 1.1166 -4.5091 -1.3173 12 6 1.5158 -6.7120 -0.5704 13 6 0.2605 -7.0187 -1.3895 14 6 -0.0519 -8.4902 -1.2980 15 1 0.5818 -9.1415 -0.7144 16 6 -1.1461 -9.0051 -1.9604 17 7 -1.9175 -8.2121 -2.6715 18 14 -1.5329 -10.8290 -1.8475 19 1 -0.5202 -11.4978 -0.9918 20 1 -2.8814 -11.0133 -1.2536 21 1 -1.5050 -11.4261 -3.2070 22 6 2.0525 -2.4803 -0.0008 23 6 2.2835 -1.1119 0.0005 24 1 -0.3632 0.0004 1.0278 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3633 -0.8903 -0.5135 27 1 1.9258 2.1194 -0.0004 28 1 5.6861 -1.1565 0.0000 29 1 5.2604 -3.5594 -0.0001 30 1 3.5094 -5.3320 0.4472 31 1 2.3552 -7.2863 -0.9623 32 1 1.3448 -6.9833 0.4713 33 1 -0.5787 -6.4444 -0.9973 34 1 0.4312 -6.7473 -2.4313 35 1 -2.6875 -8.5742 -3.1371 36 1 1.0416 -2.8603 -0.0013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156786233.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:55 Heat of formation + Delta-G solvation = 9.347321 kcal Electronic energy + Delta-G solvation = -19812.038797 eV Core-core repulsion = 16681.741493 eV Total energy + Delta-G solvation = -3130.297303 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.08260 -41.22508 -38.42201 -35.65546 -35.49440 -34.75452 -33.01481 -31.48372 -29.69042 -27.87881 -27.57838 -24.85114 -23.73820 -22.70266 -21.78321 -21.15207 -19.00682 -18.79888 -18.15041 -17.44815 -17.12071 -16.73113 -16.52568 -16.47268 -15.65589 -15.13926 -15.01064 -14.67339 -14.31392 -14.20694 -14.09817 -13.82193 -13.47270 -13.25340 -13.05029 -12.84819 -12.60132 -12.44699 -11.93671 -11.65864 -11.40665 -11.29726 -11.12415 -11.03157 -10.63213 -10.57341 -9.28605 -8.73475 -8.18823 -6.32362 -0.07304 0.44839 1.42874 1.43642 1.50575 1.57013 1.69026 1.90618 2.13055 2.43675 2.85585 3.14877 3.34706 3.65763 3.84137 3.97740 4.10076 4.28855 4.34405 4.37584 4.42124 4.50942 4.54462 4.63897 4.65002 5.01853 5.06542 5.25868 5.31666 5.38152 5.49673 5.54873 5.61859 5.84112 5.90907 6.16598 6.22540 6.48537 6.85857 6.86534 7.20893 7.38039 8.93962 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.032946 B = 0.003470 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.674548 B = 8066.753930 C = 8782.274849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.500 5.500 3 C 0.265 3.735 4 N -0.528 5.528 5 C 0.005 3.995 6 C -0.051 4.051 7 C -0.136 4.136 8 C 0.153 3.847 9 N -0.658 5.658 10 C 0.511 3.489 11 O -0.566 6.566 12 C -0.116 4.116 13 C 0.041 3.959 14 C -0.541 4.541 15 H 0.078 0.922 16 C -0.007 4.007 17 N -0.938 5.938 18 Si 0.973 3.027 19 H -0.252 1.252 20 H -0.281 1.281 21 H -0.282 1.282 22 C -0.140 4.140 23 C 0.042 3.958 24 H 0.089 0.911 25 H 0.124 0.876 26 H 0.064 0.936 27 H 0.261 0.739 28 H 0.156 0.844 29 H 0.170 0.830 30 H 0.432 0.568 31 H 0.112 0.888 32 H 0.111 0.889 33 H -0.016 1.016 34 H -0.017 1.017 35 H 0.262 0.738 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.193 15.103 9.394 21.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.191 5.191 3 C -0.020 4.020 4 N -0.248 5.248 5 C -0.113 4.113 6 C -0.071 4.071 7 C -0.158 4.158 8 C 0.057 3.943 9 N -0.305 5.305 10 C 0.302 3.698 11 O -0.443 6.443 12 C -0.156 4.156 13 C 0.003 3.997 14 C -0.579 4.579 15 H 0.096 0.904 16 C -0.204 4.204 17 N -0.578 5.578 18 Si 0.797 3.203 19 H -0.175 1.175 20 H -0.207 1.207 21 H -0.208 1.208 22 C -0.164 4.164 23 C -0.068 4.068 24 H 0.107 0.893 25 H 0.143 0.857 26 H 0.083 0.917 27 H 0.276 0.724 28 H 0.174 0.826 29 H 0.187 0.813 30 H 0.272 0.728 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.002 0.998 34 H 0.001 0.999 35 H 0.071 0.929 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.067 16.071 8.841 21.422 hybrid contribution -1.427 -1.473 -0.218 2.062 sum 9.640 14.598 8.623 19.504 Atomic orbital electron populations 1.22231 0.74187 1.05618 1.04657 1.45583 1.08550 1.04939 1.59983 1.26254 0.84369 0.94636 0.96776 1.70398 1.20021 1.10562 1.23788 1.19467 0.92595 0.91011 1.08180 1.20120 0.98146 0.90767 0.98096 1.20710 0.94774 0.95823 1.04512 1.17578 0.93431 0.83237 1.00039 1.43514 1.28204 1.05364 1.53459 1.21641 0.79357 0.91980 0.76862 1.90675 1.50131 1.62227 1.41290 1.21671 1.01012 0.89032 1.03870 1.18707 0.91890 0.95380 0.93691 1.21743 1.11304 0.94284 1.30539 0.90414 1.26120 0.96134 1.03444 0.94752 1.70176 1.17020 1.37571 1.33014 0.85286 0.78337 0.78647 0.78055 1.17514 1.20740 1.20766 1.19756 0.99305 0.89561 1.07731 1.18813 0.92178 0.89368 1.06488 0.89290 0.85724 0.91725 0.72373 0.82618 0.81299 0.72816 0.86998 0.87098 0.99802 0.99859 0.92910 0.87434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.20 11.18 127.77 1.43 2.63 16 2 N -0.50 -11.68 3.21 -543.60 -1.74 -13.43 16 3 C 0.26 5.23 12.50 180.03 2.25 7.49 16 4 N -0.53 -14.16 11.27 -191.88 -2.16 -16.32 16 5 C 0.01 0.16 7.23 39.45 0.29 0.44 16 6 C -0.05 -1.23 10.04 22.24 0.22 -1.01 16 7 C -0.14 -3.06 9.87 22.14 0.22 -2.85 16 8 C 0.15 4.45 6.28 38.16 0.24 4.69 16 9 N -0.66 -17.96 5.34 -303.37 -1.62 -19.58 16 10 C 0.51 19.24 7.56 87.66 0.66 19.90 16 11 O -0.57 -27.09 13.68 -3.06 -0.04 -27.13 16 12 C -0.12 -4.42 5.64 29.85 0.17 -4.25 16 13 C 0.04 2.22 4.26 29.85 0.13 2.35 16 14 C -0.54 -30.08 9.11 25.60 0.23 -29.85 16 15 H 0.08 3.92 7.74 -2.91 -0.02 3.89 16 16 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 17 N -0.94 -58.77 13.29 21.45 0.28 -58.49 16 18 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 19 H -0.25 -10.37 7.11 99.48 0.71 -9.67 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 22 C -0.14 -4.68 8.65 22.45 0.19 -4.48 16 23 C 0.04 1.27 6.87 38.84 0.27 1.54 16 24 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.26 2.02 8.06 -2.92 -0.02 1.99 16 28 H 0.16 2.87 8.06 -2.91 -0.02 2.84 16 29 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 30 H 0.43 7.75 8.82 -92.70 -0.82 6.93 16 31 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 32 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 33 H -0.02 -1.01 8.10 -2.39 -0.02 -1.03 16 34 H -0.02 -1.05 8.10 -2.39 -0.02 -1.07 16 35 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.11 4.15 6.42 -2.91 -0.02 4.14 16 Total: -1.00 -84.02 314.67 3.79 -80.23 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.29 Total: 12.36 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: 6.76 Total: -3.34 kcal Atomic # 7 Polarization: -102.57 SS G_CDS: -5.24 Total: -107.81 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.04 Total: -27.13 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -84.02 3.79 -80.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156786233.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.576 kcal (2) G-P(sol) polarization free energy of solvation -84.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds