Wall clock time and date at job start Mon Mar 30 2020 01:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36343 * 125.63557 * 2 1 4 4 C 1.34848 * 108.21654 * 180.02562 * 3 2 1 5 5 C 1.40887 * 107.42140 * 359.77188 * 4 3 2 6 6 C 1.34858 * 107.41595 * 0.37924 * 5 4 3 7 7 C 1.50698 * 125.89287 * 179.88744 * 6 5 4 8 8 N 1.46497 * 109.47139 * 94.68817 * 7 6 5 9 9 C 1.39129 * 119.99800 * 179.97438 * 8 7 6 10 10 C 1.39174 * 119.63118 * 0.02562 * 9 8 7 11 11 C 1.38197 * 119.17007 * 179.97438 * 10 9 8 12 12 C 1.39454 * 118.45169 * 359.97438 * 11 10 9 13 13 O 1.35818 * 120.40591 * 179.97438 * 12 11 10 14 14 C 1.34813 * 116.99829 * 5.47607 * 13 12 11 15 15 H 1.08000 * 120.00025 * 354.94181 * 14 13 12 16 16 C 1.38633 * 119.99987 * 174.94302 * 14 13 12 17 17 N 1.31579 * 119.99724 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 119.99922 * 179.72234 * 16 14 13 19 19 H 1.48497 * 109.47629 * 270.27351 * 18 16 14 20 20 H 1.48498 * 109.47509 * 30.28064 * 18 16 14 21 21 H 1.48503 * 109.47141 * 150.27693 * 18 16 14 22 22 C 1.38669 * 119.18970 * 0.25307 * 12 11 10 23 23 N 1.31932 * 120.75379 * 359.47526 * 22 12 11 24 24 H 1.09005 * 109.46510 * 269.96936 * 1 2 3 25 25 H 1.08994 * 109.46941 * 29.96392 * 1 2 3 26 26 H 1.08996 * 109.46836 * 149.97213 * 1 2 3 27 27 H 1.07994 * 125.89222 * 359.97438 * 3 2 1 28 28 H 1.08001 * 126.29291 * 179.97438 * 4 3 2 29 29 H 1.08000 * 126.29864 * 180.24057 * 5 4 3 30 30 H 1.08997 * 109.46802 * 334.68400 * 7 6 5 31 31 H 1.09006 * 109.46670 * 214.69139 * 7 6 5 32 32 H 0.96992 * 120.00505 * 0.02562 * 8 7 6 33 33 H 1.08001 * 120.41006 * 359.97438 * 10 9 8 34 34 H 1.08006 * 120.77774 * 179.97438 * 11 10 9 35 35 H 0.97001 * 120.00238 * 359.72533 * 17 16 14 36 36 H 1.07998 * 119.61935 * 179.74876 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5461 0.7044 -0.0006 5 6 3.5461 -0.7044 0.0044 6 6 2.2594 -1.1081 -0.0007 7 6 1.7819 -2.5375 -0.0004 8 7 1.5139 -2.9626 1.3756 9 6 1.0591 -4.2528 1.6290 10 6 0.8619 -5.1334 0.5695 11 6 0.4105 -6.4128 0.8321 12 6 0.1693 -6.7733 2.1575 13 8 -0.2755 -8.0202 2.4607 14 6 -0.3577 -8.9042 1.4462 15 1 -0.1546 -8.5855 0.4345 16 6 -0.7030 -10.2223 1.7016 17 7 -0.9510 -10.6104 2.9342 18 14 -0.8245 -11.4453 0.2950 19 1 -2.2075 -11.4421 -0.2459 20 1 0.1276 -11.0618 -0.7782 21 1 -0.4901 -12.8047 0.7906 22 6 0.3837 -5.8412 3.1616 23 7 0.8203 -4.6296 2.8753 24 1 -0.3632 -0.0005 1.0277 25 1 -0.3633 0.8903 -0.5132 26 1 -0.3633 -0.8897 -0.5143 27 1 1.9172 2.1324 -0.0004 28 1 4.4166 1.3436 -0.0011 29 1 4.4166 -1.3437 0.0090 30 1 2.5498 -3.1771 -0.4354 31 1 0.8679 -2.6152 -0.5894 32 1 1.6528 -2.3444 2.1100 33 1 1.0593 -4.8206 -0.4452 34 1 0.2482 -7.1173 0.0296 35 1 -0.8883 -9.9752 3.6646 36 1 0.1953 -6.1117 4.1901 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162709329.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:28 Heat of formation + Delta-G solvation = 65.219606 kcal Electronic energy + Delta-G solvation = -19618.067414 eV Core-core repulsion = 16490.192915 eV Total energy + Delta-G solvation = -3127.874499 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.40914 -39.64391 -37.46738 -35.14371 -33.03973 -32.29579 -31.30128 -30.36828 -27.73069 -26.57008 -25.25429 -24.76760 -22.71271 -21.39515 -20.75910 -19.41859 -18.50680 -17.65545 -16.96511 -16.17673 -15.99044 -15.33615 -14.78467 -14.43745 -14.18606 -13.93010 -13.81409 -13.56165 -13.40005 -13.32156 -12.61529 -12.55810 -12.47971 -12.26712 -12.22880 -11.91800 -11.75279 -10.91654 -10.54089 -10.32715 -9.77506 -9.40265 -9.03278 -8.79574 -8.77495 -8.54559 -8.29075 -6.77891 -6.73260 -4.02974 1.94463 1.94656 2.33404 2.74613 2.81972 3.23329 3.29736 3.42884 3.76052 4.12592 4.53403 4.56364 4.60927 4.88898 4.89887 5.08411 5.13067 5.19164 5.22459 5.31935 5.43937 5.51790 5.58719 5.66587 5.85459 5.89692 6.10045 6.18246 6.42801 6.67274 6.83656 7.03157 7.04553 7.05914 7.16509 7.44986 7.57462 8.04961 8.40576 8.81598 8.94163 9.61946 10.69075 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.039969 B = 0.003166 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.381352 B = 8843.191306 C = 9081.770403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.442 5.442 3 C -0.011 4.011 4 C -0.204 4.204 5 C -0.176 4.176 6 C -0.002 4.002 7 C 0.210 3.790 8 N -0.737 5.737 9 C 0.311 3.689 10 C -0.185 4.185 11 C -0.150 4.150 12 C 0.067 3.933 13 O -0.202 6.202 14 C -0.471 4.471 15 H 0.080 0.920 16 C 0.009 3.991 17 N -0.883 5.883 18 Si 1.098 2.902 19 H -0.281 1.281 20 H -0.283 1.283 21 H -0.276 1.276 22 C 0.067 3.933 23 N -0.501 5.501 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.161 0.839 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.397 0.603 33 H 0.117 0.883 34 H 0.137 0.863 35 H 0.283 0.717 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.081 19.573 -8.101 21.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.118 5.118 3 C -0.142 4.142 4 C -0.229 4.229 5 C -0.202 4.202 6 C -0.113 4.113 7 C 0.084 3.916 8 N -0.377 5.377 9 C 0.079 3.921 10 C -0.209 4.209 11 C -0.178 4.178 12 C 0.012 3.988 13 O -0.107 6.107 14 C -0.548 4.548 15 H 0.098 0.902 16 C -0.196 4.196 17 N -0.516 5.516 18 Si 0.922 3.078 19 H -0.208 1.208 20 H -0.209 1.209 21 H -0.201 1.201 22 C -0.092 4.092 23 N -0.217 5.217 24 H 0.093 0.907 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.178 0.822 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.232 0.768 33 H 0.135 0.865 34 H 0.155 0.845 35 H 0.093 0.907 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.398 18.361 -7.766 20.224 hybrid contribution 0.280 1.451 -0.233 1.496 sum 3.678 19.812 -7.999 21.680 Atomic orbital electron populations 1.22035 0.77284 1.04217 1.03564 1.43958 1.06164 1.05716 1.55936 1.21825 0.90618 0.91275 1.10471 1.20889 0.95946 0.95070 1.10971 1.20784 0.95233 0.95148 1.09003 1.20286 0.90552 0.88264 1.12190 1.19447 0.99702 0.87943 0.84475 1.44009 1.76190 1.10984 1.06473 1.17902 0.98602 0.86298 0.89255 1.21102 1.07339 0.94301 0.98175 1.21416 1.02919 0.96314 0.97102 1.20094 0.97247 0.88092 0.93337 1.83678 1.73403 1.16486 1.37098 1.22154 1.53415 0.91403 0.87808 0.90226 1.26486 0.94970 0.95222 1.02898 1.70546 1.42222 1.38994 0.99814 0.83059 0.77032 0.75237 0.72423 1.20772 1.20897 1.20060 1.21424 1.02213 0.87341 0.98257 1.66909 1.16627 1.18024 1.20131 0.90737 0.89956 0.89708 0.82182 0.84680 0.84570 0.90554 0.92424 0.76822 0.86497 0.84506 0.90737 0.83281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 10.92 59.85 0.65 1.18 16 2 N -0.44 -4.41 3.15 -119.90 -0.38 -4.79 16 3 C -0.01 -0.10 11.43 -16.75 -0.19 -0.30 16 4 C -0.20 -2.10 10.86 -39.78 -0.43 -2.53 16 5 C -0.18 -2.01 10.77 -39.78 -0.43 -2.44 16 6 C 0.00 -0.02 6.26 -81.79 -0.51 -0.53 16 7 C 0.21 2.50 5.04 -5.20 -0.03 2.47 16 8 N -0.74 -10.80 5.73 -61.56 -0.35 -11.15 16 9 C 0.31 5.73 7.65 -154.90 -1.19 4.54 16 10 C -0.18 -3.40 9.32 -39.25 -0.37 -3.76 16 11 C -0.15 -3.24 9.25 -39.14 -0.36 -3.60 16 12 C 0.07 1.62 6.67 -38.97 -0.26 1.36 16 13 O -0.20 -5.64 9.17 -0.11 0.00 -5.64 16 14 C -0.47 -13.13 9.50 30.88 0.29 -12.84 16 15 H 0.08 2.08 5.25 -52.49 -0.28 1.80 16 16 C 0.01 0.26 5.49 -17.51 -0.10 0.17 16 17 N -0.88 -26.30 13.70 55.48 0.76 -25.54 16 18 Si 1.10 23.58 29.92 -169.99 -5.09 18.50 16 19 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 22 C 0.07 1.45 11.14 -17.35 -0.19 1.26 16 23 N -0.50 -10.22 10.38 -12.25 -0.13 -10.35 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.63 7.12 -51.93 -0.37 0.26 16 27 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 28 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.14 1.45 8.06 -52.49 -0.42 1.02 16 30 H 0.08 0.89 7.93 -51.93 -0.41 0.48 16 31 H 0.06 0.65 7.00 -51.93 -0.36 0.28 16 32 H 0.40 5.81 8.59 -40.82 -0.35 5.46 16 33 H 0.12 1.78 6.70 -52.49 -0.35 1.43 16 34 H 0.14 2.92 5.76 -52.48 -0.30 2.62 16 35 H 0.28 8.59 7.97 -40.82 -0.33 8.26 16 36 H 0.15 3.03 8.06 -52.49 -0.42 2.60 16 LS Contribution 312.48 15.07 4.71 4.71 Total: -1.00 -32.04 312.48 -7.66 -39.70 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -4.08 Total: 9.58 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -3.11 Total: -15.02 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: -0.10 Total: -51.83 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: 0.00 Total: -5.64 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -5.09 Total: 18.50 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.04 -7.66 -39.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162709329.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.921 kcal (2) G-P(sol) polarization free energy of solvation -32.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds