Wall clock time and date at job start Mon Mar 30 2020 01:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36343 * 125.63557 * 2 1 4 4 C 1.34848 * 108.21654 * 180.02562 * 3 2 1 5 5 C 1.40887 * 107.42140 * 359.77188 * 4 3 2 6 6 C 1.34858 * 107.41595 * 0.37924 * 5 4 3 7 7 C 1.50698 * 125.89287 * 179.88744 * 6 5 4 8 8 N 1.46497 * 109.47139 * 94.68817 * 7 6 5 9 9 C 1.39129 * 119.99800 * 179.97438 * 8 7 6 10 10 C 1.39174 * 119.63118 * 0.02562 * 9 8 7 11 11 C 1.38197 * 119.17007 * 179.97438 * 10 9 8 12 12 C 1.39454 * 118.45169 * 359.97438 * 11 10 9 13 13 O 1.35818 * 120.40591 * 179.97438 * 12 11 10 14 14 C 1.34813 * 116.99829 * 5.47607 * 13 12 11 15 15 H 1.08000 * 120.00025 * 354.94181 * 14 13 12 16 16 C 1.38633 * 119.99987 * 174.94302 * 14 13 12 17 17 N 1.31579 * 119.99724 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 119.99922 * 179.72234 * 16 14 13 19 19 H 1.48497 * 109.47629 * 270.27351 * 18 16 14 20 20 H 1.48498 * 109.47509 * 30.28064 * 18 16 14 21 21 H 1.48503 * 109.47141 * 150.27693 * 18 16 14 22 22 C 1.38669 * 119.18970 * 0.25307 * 12 11 10 23 23 N 1.31932 * 120.75379 * 359.47526 * 22 12 11 24 24 H 1.09005 * 109.46510 * 269.96936 * 1 2 3 25 25 H 1.08994 * 109.46941 * 29.96392 * 1 2 3 26 26 H 1.08996 * 109.46836 * 149.97213 * 1 2 3 27 27 H 1.07994 * 125.89222 * 359.97438 * 3 2 1 28 28 H 1.08001 * 126.29291 * 179.97438 * 4 3 2 29 29 H 1.08000 * 126.29864 * 180.24057 * 5 4 3 30 30 H 1.08997 * 109.46802 * 334.68400 * 7 6 5 31 31 H 1.09006 * 109.46670 * 214.69139 * 7 6 5 32 32 H 0.96992 * 120.00505 * 0.02562 * 8 7 6 33 33 H 1.08001 * 120.41006 * 359.97438 * 10 9 8 34 34 H 1.08006 * 120.77774 * 179.97438 * 11 10 9 35 35 H 0.97001 * 120.00238 * 359.72533 * 17 16 14 36 36 H 1.07998 * 119.61935 * 179.74876 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5461 0.7044 -0.0006 5 6 3.5461 -0.7044 0.0044 6 6 2.2594 -1.1081 -0.0007 7 6 1.7819 -2.5375 -0.0004 8 7 1.5139 -2.9626 1.3756 9 6 1.0591 -4.2528 1.6290 10 6 0.8619 -5.1334 0.5695 11 6 0.4105 -6.4128 0.8321 12 6 0.1693 -6.7733 2.1575 13 8 -0.2755 -8.0202 2.4607 14 6 -0.3577 -8.9042 1.4462 15 1 -0.1546 -8.5855 0.4345 16 6 -0.7030 -10.2223 1.7016 17 7 -0.9510 -10.6104 2.9342 18 14 -0.8245 -11.4453 0.2950 19 1 -2.2075 -11.4421 -0.2459 20 1 0.1276 -11.0618 -0.7782 21 1 -0.4901 -12.8047 0.7906 22 6 0.3837 -5.8412 3.1616 23 7 0.8203 -4.6296 2.8753 24 1 -0.3632 -0.0005 1.0277 25 1 -0.3633 0.8903 -0.5132 26 1 -0.3633 -0.8897 -0.5143 27 1 1.9172 2.1324 -0.0004 28 1 4.4166 1.3436 -0.0011 29 1 4.4166 -1.3437 0.0090 30 1 2.5498 -3.1771 -0.4354 31 1 0.8679 -2.6152 -0.5894 32 1 1.6528 -2.3444 2.1100 33 1 1.0593 -4.8206 -0.4452 34 1 0.2482 -7.1173 0.0296 35 1 -0.8883 -9.9752 3.6646 36 1 0.1953 -6.1117 4.1901 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162709329.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:28 Heat of formation + Delta-G solvation = 45.156793 kcal Electronic energy + Delta-G solvation = -19618.937403 eV Core-core repulsion = 16490.192915 eV Total energy + Delta-G solvation = -3128.744488 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.18089 -41.32341 -39.24163 -36.49972 -34.27324 -33.72779 -32.97661 -31.54689 -29.15335 -27.21007 -26.91834 -26.15341 -24.37663 -23.01468 -21.51270 -20.46518 -20.18390 -19.10490 -18.16414 -17.75729 -17.41480 -16.25326 -16.06450 -15.92585 -15.61498 -15.46561 -15.38221 -15.00061 -14.52860 -14.25220 -14.17064 -13.72106 -13.61922 -13.28906 -13.13537 -12.91218 -12.72361 -12.55575 -12.42334 -11.90577 -11.71509 -11.00964 -10.67667 -10.46220 -10.36436 -9.52693 -9.08176 -8.89465 -8.35980 -6.16526 0.28618 0.64843 1.10821 1.51813 1.65044 1.79818 1.98982 2.06979 2.37323 2.53507 2.88960 3.15507 3.36339 3.67018 3.76174 3.98772 4.03208 4.15245 4.22676 4.28411 4.33963 4.40269 4.55306 4.70782 4.72237 4.80302 4.81348 4.95877 5.29004 5.34403 5.39774 5.41441 5.50983 6.04426 6.13229 6.25994 6.26432 6.46059 6.64652 6.90643 7.23302 7.67313 8.56398 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.039969 B = 0.003166 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.381352 B = 8843.191306 C = 9081.770403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.445 5.445 3 C -0.005 4.005 4 C -0.224 4.224 5 C -0.191 4.191 6 C -0.019 4.019 7 C 0.208 3.792 8 N -0.722 5.722 9 C 0.332 3.668 10 C -0.178 4.178 11 C -0.146 4.146 12 C 0.026 3.974 13 O -0.248 6.248 14 C -0.484 4.484 15 H 0.092 0.908 16 C -0.046 4.046 17 N -0.921 5.921 18 Si 1.147 2.853 19 H -0.265 1.265 20 H -0.257 1.257 21 H -0.276 1.276 22 C 0.067 3.933 23 N -0.515 5.515 24 H 0.073 0.927 25 H 0.108 0.892 26 H 0.084 0.916 27 H 0.191 0.809 28 H 0.148 0.852 29 H 0.136 0.864 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.400 0.600 33 H 0.158 0.842 34 H 0.138 0.862 35 H 0.261 0.739 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.553 22.163 -10.572 24.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.120 5.120 3 C -0.136 4.136 4 C -0.248 4.248 5 C -0.217 4.217 6 C -0.131 4.131 7 C 0.084 3.916 8 N -0.360 5.360 9 C 0.097 3.903 10 C -0.203 4.203 11 C -0.172 4.172 12 C -0.027 4.027 13 O -0.155 6.155 14 C -0.560 4.560 15 H 0.109 0.891 16 C -0.242 4.242 17 N -0.556 5.556 18 Si 0.963 3.037 19 H -0.190 1.190 20 H -0.182 1.182 21 H -0.201 1.201 22 C -0.090 4.090 23 N -0.232 5.232 24 H 0.092 0.908 25 H 0.126 0.874 26 H 0.103 0.897 27 H 0.208 0.792 28 H 0.166 0.834 29 H 0.154 0.846 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.235 0.765 33 H 0.175 0.825 34 H 0.156 0.844 35 H 0.070 0.930 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.889 21.045 -10.253 23.730 hybrid contribution 0.280 1.133 0.481 1.263 sum 4.169 22.178 -9.771 24.591 Atomic orbital electron populations 1.22224 0.75852 1.05571 1.03906 1.44174 1.07125 1.05440 1.55274 1.22359 0.90333 0.92390 1.08516 1.21176 0.97136 0.94839 1.11670 1.21007 0.95498 0.96040 1.09149 1.20164 0.90846 0.88327 1.13753 1.19612 1.00633 0.88673 0.82654 1.44236 1.74280 1.09306 1.08156 1.18301 0.95849 0.87484 0.88714 1.21402 1.05974 0.92775 1.00125 1.21589 1.01995 0.97611 0.96050 1.20489 0.99539 0.87505 0.95124 1.83658 1.76193 1.18014 1.37673 1.22568 1.53000 0.91953 0.88520 0.89074 1.28318 0.93981 0.97459 1.04419 1.70684 1.46148 1.38400 1.00416 0.82543 0.78438 0.72692 0.70044 1.19017 1.18156 1.20146 1.21534 1.01648 0.87524 0.98326 1.67019 1.17692 1.17269 1.21257 0.90838 0.87389 0.89736 0.79215 0.83415 0.84588 0.89787 0.90932 0.76515 0.82497 0.84444 0.93050 0.82970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.74 10.92 127.77 1.40 2.14 16 2 N -0.44 -7.44 3.15 -533.24 -1.68 -9.12 16 3 C 0.00 -0.07 11.43 83.21 0.95 0.88 16 4 C -0.22 -4.05 10.86 22.14 0.24 -3.80 16 5 C -0.19 -3.96 10.77 22.14 0.24 -3.72 16 6 C -0.02 -0.39 6.26 41.08 0.26 -0.13 16 7 C 0.21 4.25 5.04 85.63 0.43 4.68 16 8 N -0.72 -19.00 5.73 -348.68 -2.00 -21.00 16 9 C 0.33 11.39 7.65 133.04 1.02 12.41 16 10 C -0.18 -6.06 9.32 22.49 0.21 -5.85 16 11 C -0.15 -6.14 9.25 22.55 0.21 -5.93 16 12 C 0.03 1.28 6.67 22.67 0.15 1.43 16 13 O -0.25 -14.48 9.17 -23.31 -0.21 -14.69 16 14 C -0.48 -27.73 9.50 67.91 0.64 -27.09 16 15 H 0.09 4.79 5.25 -2.91 -0.02 4.77 16 16 C -0.05 -2.61 5.49 84.82 0.47 -2.14 16 17 N -0.92 -57.40 13.70 21.61 0.30 -57.11 16 18 Si 1.15 47.47 29.92 68.60 2.05 49.52 16 19 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 20 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 21 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 22 C 0.07 2.96 11.14 84.78 0.94 3.91 16 23 N -0.51 -20.48 10.38 -192.67 -2.00 -22.48 16 24 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 25 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.08 0.97 7.12 -2.39 -0.02 0.96 16 27 H 0.19 1.64 8.06 -2.91 -0.02 1.61 16 28 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 29 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 30 H 0.08 1.65 7.93 -2.39 -0.02 1.63 16 31 H 0.07 1.32 7.00 -2.38 -0.02 1.31 16 32 H 0.40 10.60 8.59 -92.71 -0.80 9.81 16 33 H 0.16 4.07 6.70 -2.91 -0.02 4.05 16 34 H 0.14 5.73 5.76 -2.91 -0.02 5.72 16 35 H 0.26 16.94 7.97 -92.71 -0.74 16.20 16 36 H 0.15 6.44 8.06 -2.91 -0.02 6.42 16 Total: -1.00 -72.14 312.48 3.96 -68.17 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: 0.35 Total: 29.93 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: 7.16 Total: -23.22 kcal Atomic # 7 Polarization: -104.33 SS G_CDS: -5.38 Total: -109.71 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.21 Total: -14.69 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.05 Total: 49.52 kcal Total: -72.14 3.96 -68.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162709329.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.331 kcal (2) G-P(sol) polarization free energy of solvation -72.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds