Wall clock time and date at job start Mon Mar 30 2020 01:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.46849 * 2 1 4 4 C 1.35915 * 116.99832 * 180.02562 * 3 2 1 5 5 C 1.39695 * 119.68154 * 0.02562 * 4 3 2 6 6 C 1.36221 * 120.97018 * 179.49130 * 5 4 3 7 7 C 1.40185 * 119.79747 * 0.76727 * 6 5 4 8 8 N 1.34154 * 121.86175 * 179.19180 * 7 6 5 9 9 C 1.31204 * 120.50101 * 180.02562 * 8 7 6 10 10 N 1.32309 * 122.99675 * 0.02562 * 9 8 7 11 11 C 1.32700 * 121.46974 * 359.97438 * 10 9 8 12 12 N 1.37866 * 120.91701 * 180.02562 * 11 10 9 13 13 C 1.46497 * 119.99808 * 87.37176 * 12 11 10 14 14 C 1.36832 * 119.99788 * 267.37556 * 12 11 10 15 15 H 1.07999 * 120.00673 * 334.86916 * 14 12 11 16 16 C 1.38910 * 120.00117 * 154.86607 * 14 12 11 17 17 N 1.31480 * 120.00307 * 158.97009 * 16 14 12 18 18 Si 1.86805 * 119.99768 * 339.24877 * 16 14 12 19 19 H 1.48506 * 109.47126 * 84.86104 * 18 16 14 20 20 H 1.48496 * 109.46967 * 204.85980 * 18 16 14 21 21 H 1.48496 * 109.47056 * 324.85761 * 18 16 14 22 22 C 1.41663 * 119.47146 * 359.46584 * 7 6 5 23 23 C 1.37860 * 119.68367 * 180.02562 * 4 3 2 24 24 H 1.08999 * 109.47261 * 300.00150 * 1 2 3 25 25 H 1.09000 * 109.47568 * 60.00070 * 1 2 3 26 26 H 1.09001 * 109.46907 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46998 * 240.00321 * 2 1 3 28 28 H 1.08991 * 109.46984 * 119.99982 * 2 1 3 29 29 H 1.07995 * 119.51623 * 0.02562 * 5 4 3 30 30 H 1.07994 * 120.10057 * 179.97438 * 6 5 4 31 31 H 1.07994 * 118.49805 * 179.97438 * 9 8 7 32 32 H 1.09004 * 109.46983 * 274.24800 * 13 12 11 33 33 H 1.08996 * 109.47295 * 34.25168 * 13 12 11 34 34 H 1.09001 * 109.46615 * 154.25228 * 13 12 11 35 35 H 0.97000 * 120.00103 * 180.02562 * 17 16 14 36 36 H 1.08003 * 120.31958 * 0.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5254 -0.0005 5 6 4.1985 0.4129 -0.0016 6 6 5.5526 0.5610 -0.0125 7 6 6.1130 1.8459 -0.0066 8 7 7.4404 2.0396 -0.0008 9 6 7.9362 3.2544 0.0051 10 7 7.1810 4.3408 0.0063 11 6 5.8563 4.2636 0.0010 12 7 5.0803 5.4032 0.0018 13 6 4.7211 6.0456 -1.2649 14 6 4.6459 5.9342 1.1857 15 1 4.5416 5.3021 2.0552 16 6 4.3391 7.2864 1.2694 17 7 3.5534 7.7242 2.2284 18 14 5.0364 8.4818 0.0146 19 1 4.1653 8.5012 -1.1880 20 1 5.0940 9.8426 0.6061 21 1 6.4042 8.0517 -0.3718 22 6 5.2611 2.9778 -0.0008 23 6 3.8736 2.8023 0.0000 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.7718 -0.5792 -0.0024 30 1 6.1926 -0.3089 -0.0128 31 1 9.0096 3.3728 0.0101 32 1 5.5167 6.7276 -1.5649 33 1 4.5862 5.2841 -2.0330 34 1 3.7929 6.6031 -1.1390 35 1 3.3389 8.6684 2.2866 36 1 3.2157 3.6588 0.0012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166799096.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:50 Heat of formation + Delta-G solvation = 63.567582 kcal Electronic energy + Delta-G solvation = -20711.702535 eV Core-core repulsion = 17583.756399 eV Total energy + Delta-G solvation = -3127.946136 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.88731 -39.29828 -36.60609 -36.11615 -32.90842 -31.89403 -31.31384 -30.85724 -28.84371 -26.45390 -25.15569 -24.18877 -23.33688 -22.23183 -20.91624 -18.69358 -18.11580 -17.22216 -16.69460 -16.10051 -15.51295 -15.41448 -15.05498 -14.27374 -14.07501 -13.96561 -13.72687 -13.17643 -13.02297 -12.77074 -12.65348 -12.58018 -12.34317 -12.01430 -11.64105 -11.52200 -10.96346 -10.75235 -10.48345 -10.38077 -10.25712 -9.95471 -9.68019 -9.08403 -8.85910 -8.57717 -7.50918 -7.48868 -6.16911 -3.62257 0.63281 1.14731 2.29021 3.23787 3.25408 3.30885 3.42008 3.49126 4.16865 4.38154 4.48221 4.52535 4.78301 4.81010 4.82343 4.97674 5.01181 5.12106 5.17513 5.37134 5.45932 5.58391 5.67064 5.77429 5.91026 6.01876 6.04291 6.17937 6.20676 6.29310 6.45293 6.49857 6.74163 6.84721 7.45705 7.64153 7.73811 8.13771 8.65879 8.78515 9.43951 9.68452 10.96332 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.016355 B = 0.006654 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.623741 B = 4207.104365 C = 5523.149663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.311 6.311 4 C 0.097 3.903 5 C -0.154 4.154 6 C -0.079 4.079 7 C 0.133 3.867 8 N -0.532 5.532 9 C 0.302 3.698 10 N -0.550 5.550 11 C 0.500 3.500 12 N -0.555 5.555 13 C 0.104 3.896 14 C -0.276 4.276 15 H 0.093 0.907 16 C 0.044 3.956 17 N -0.888 5.888 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.300 1.300 21 H -0.268 1.268 22 C -0.132 4.132 23 C -0.079 4.079 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.132 0.868 30 H 0.137 0.863 31 H 0.185 0.815 32 H 0.025 0.975 33 H 0.041 0.959 34 H 0.077 0.923 35 H 0.269 0.731 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.107 -14.934 -6.517 16.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.226 6.226 4 C 0.052 3.948 5 C -0.175 4.175 6 C -0.098 4.098 7 C 0.006 3.994 8 N -0.247 5.247 9 C 0.011 3.989 10 N -0.269 5.269 11 C 0.251 3.749 12 N -0.276 5.276 13 C -0.040 4.040 14 C -0.403 4.403 15 H 0.110 0.890 16 C -0.159 4.159 17 N -0.528 5.528 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.227 1.227 21 H -0.193 1.193 22 C -0.140 4.140 23 C -0.100 4.100 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.150 0.850 30 H 0.155 0.845 31 H 0.201 0.799 32 H 0.043 0.957 33 H 0.059 0.941 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.334 -14.637 -6.420 16.039 hybrid contribution -0.199 0.507 -0.432 0.694 sum -1.532 -14.131 -6.852 15.779 Atomic orbital electron populations 1.21766 0.92861 1.02535 1.03767 1.22746 0.95917 0.82480 1.01034 1.86137 1.18778 1.28576 1.89071 1.18893 0.82356 0.93713 0.99816 1.21085 0.94027 0.98190 1.04242 1.20415 0.93982 0.95534 0.99908 1.18859 0.89217 0.93115 0.98174 1.68672 1.12430 1.26094 1.17553 1.24628 1.00401 0.82821 0.91062 1.68743 1.07867 1.34204 1.16047 1.18865 0.86146 0.87674 0.82220 1.41441 1.53665 1.27897 1.04619 1.21614 0.99758 0.96725 0.85890 1.18759 1.39469 0.92952 0.89098 0.88972 1.25211 0.97247 0.96532 0.96914 1.69739 1.33632 1.15599 1.33809 0.87007 0.80798 0.79970 0.80504 1.20817 1.22744 1.19278 1.19779 0.94782 0.95391 1.04096 1.20490 0.93794 0.95553 1.00187 0.91345 0.91489 0.90641 0.92307 0.92211 0.85023 0.84548 0.79864 0.95705 0.94064 0.90475 0.92041 0.82933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 37.16 0.38 -0.89 16 2 C 0.05 0.54 5.45 37.16 0.20 0.74 16 3 O -0.31 -4.62 10.12 -19.47 -0.20 -4.81 16 4 C 0.10 1.56 6.68 -39.18 -0.26 1.30 16 5 C -0.15 -2.08 8.94 -39.76 -0.36 -2.44 16 6 C -0.08 -1.18 9.99 -39.58 -0.40 -1.57 16 7 C 0.13 2.46 6.61 -84.81 -0.56 1.90 16 8 N -0.53 -9.79 10.44 -12.63 -0.13 -9.92 16 9 C 0.30 5.56 12.22 -92.21 -1.13 4.44 16 10 N -0.55 -12.11 10.43 -13.51 -0.14 -12.25 16 11 C 0.50 11.35 6.14 -154.88 -0.95 10.40 16 12 N -0.56 -13.49 2.07 -121.89 -0.25 -13.74 16 13 C 0.10 2.25 8.31 59.85 0.50 2.75 16 14 C -0.28 -7.63 10.01 -15.07 -0.15 -7.78 16 15 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 16 C 0.04 1.22 5.22 -17.45 -0.09 1.13 16 17 N -0.89 -26.17 13.96 55.49 0.77 -25.39 16 18 Si 0.89 21.85 23.99 -169.99 -4.08 17.77 16 19 H -0.28 -6.46 6.41 56.52 0.36 -6.09 16 20 H -0.30 -7.46 7.11 56.52 0.40 -7.05 16 21 H -0.27 -6.75 6.78 56.52 0.38 -6.36 16 22 C -0.13 -2.68 5.76 -106.67 -0.61 -3.29 16 23 C -0.08 -1.50 9.55 -39.12 -0.37 -1.87 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.50 7.64 -51.93 -0.40 0.11 16 28 H 0.06 0.54 7.64 -51.93 -0.40 0.14 16 29 H 0.13 1.30 6.22 -52.49 -0.33 0.98 16 30 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.18 2.64 8.06 -52.49 -0.42 2.22 16 32 H 0.02 0.55 5.61 -51.93 -0.29 0.26 16 33 H 0.04 0.77 8.08 -51.93 -0.42 0.35 16 34 H 0.08 1.69 5.83 -51.93 -0.30 1.39 16 35 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.15 3.14 7.66 -52.48 -0.40 2.74 16 LS Contribution 302.07 15.07 4.55 4.55 Total: -1.00 -31.69 302.07 -7.54 -39.23 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -4.26 Total: -0.24 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -3.80 Total: 4.80 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: 0.25 Total: -61.30 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.20 Total: -4.81 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.08 Total: 17.77 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.69 -7.54 -39.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799096.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.797 kcal (2) G-P(sol) polarization free energy of solvation -31.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds