Wall clock time and date at job start Mon Mar 30 2020 01:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.46849 * 2 1 4 4 C 1.35915 * 116.99832 * 180.02562 * 3 2 1 5 5 C 1.39695 * 119.68154 * 0.02562 * 4 3 2 6 6 C 1.36221 * 120.97018 * 179.49130 * 5 4 3 7 7 C 1.40185 * 119.79747 * 0.76727 * 6 5 4 8 8 N 1.34154 * 121.86175 * 179.19180 * 7 6 5 9 9 C 1.31204 * 120.50101 * 180.02562 * 8 7 6 10 10 N 1.32309 * 122.99675 * 0.02562 * 9 8 7 11 11 C 1.32700 * 121.46974 * 359.97438 * 10 9 8 12 12 N 1.37866 * 120.91701 * 180.02562 * 11 10 9 13 13 C 1.46497 * 119.99808 * 87.37176 * 12 11 10 14 14 C 1.36832 * 119.99788 * 267.37556 * 12 11 10 15 15 H 1.07999 * 120.00673 * 334.86916 * 14 12 11 16 16 C 1.38910 * 120.00117 * 154.86607 * 14 12 11 17 17 N 1.31480 * 120.00307 * 158.97009 * 16 14 12 18 18 Si 1.86805 * 119.99768 * 339.24877 * 16 14 12 19 19 H 1.48506 * 109.47126 * 84.86104 * 18 16 14 20 20 H 1.48496 * 109.46967 * 204.85980 * 18 16 14 21 21 H 1.48496 * 109.47056 * 324.85761 * 18 16 14 22 22 C 1.41663 * 119.47146 * 359.46584 * 7 6 5 23 23 C 1.37860 * 119.68367 * 180.02562 * 4 3 2 24 24 H 1.08999 * 109.47261 * 300.00150 * 1 2 3 25 25 H 1.09000 * 109.47568 * 60.00070 * 1 2 3 26 26 H 1.09001 * 109.46907 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46998 * 240.00321 * 2 1 3 28 28 H 1.08991 * 109.46984 * 119.99982 * 2 1 3 29 29 H 1.07995 * 119.51623 * 0.02562 * 5 4 3 30 30 H 1.07994 * 120.10057 * 179.97438 * 6 5 4 31 31 H 1.07994 * 118.49805 * 179.97438 * 9 8 7 32 32 H 1.09004 * 109.46983 * 274.24800 * 13 12 11 33 33 H 1.08996 * 109.47295 * 34.25168 * 13 12 11 34 34 H 1.09001 * 109.46615 * 154.25228 * 13 12 11 35 35 H 0.97000 * 120.00103 * 180.02562 * 17 16 14 36 36 H 1.08003 * 120.31958 * 0.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5254 -0.0005 5 6 4.1985 0.4129 -0.0016 6 6 5.5526 0.5610 -0.0125 7 6 6.1130 1.8459 -0.0066 8 7 7.4404 2.0396 -0.0008 9 6 7.9362 3.2544 0.0051 10 7 7.1810 4.3408 0.0063 11 6 5.8563 4.2636 0.0010 12 7 5.0803 5.4032 0.0018 13 6 4.7211 6.0456 -1.2649 14 6 4.6459 5.9342 1.1857 15 1 4.5416 5.3021 2.0552 16 6 4.3391 7.2864 1.2694 17 7 3.5534 7.7242 2.2284 18 14 5.0364 8.4818 0.0146 19 1 4.1653 8.5012 -1.1880 20 1 5.0940 9.8426 0.6061 21 1 6.4042 8.0517 -0.3718 22 6 5.2611 2.9778 -0.0008 23 6 3.8736 2.8023 0.0000 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.7718 -0.5792 -0.0024 30 1 6.1926 -0.3089 -0.0128 31 1 9.0096 3.3728 0.0101 32 1 5.5167 6.7276 -1.5649 33 1 4.5862 5.2841 -2.0330 34 1 3.7929 6.6031 -1.1390 35 1 3.3389 8.6684 2.2866 36 1 3.2157 3.6588 0.0012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166799096.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:49 Heat of formation + Delta-G solvation = 43.585277 kcal Electronic energy + Delta-G solvation = -20712.569033 eV Core-core repulsion = 17583.756399 eV Total energy + Delta-G solvation = -3128.812634 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.31432 -40.52984 -38.29956 -37.46167 -34.62960 -33.40623 -32.57798 -32.21855 -30.16561 -28.28034 -26.88119 -25.37840 -24.78702 -23.36371 -22.44688 -19.92607 -19.64371 -19.02789 -18.33012 -17.21416 -17.03827 -16.81276 -16.62039 -15.78495 -15.49666 -15.23925 -15.19556 -14.73650 -14.45577 -14.36830 -14.09028 -13.92326 -13.45986 -13.33539 -12.99796 -12.70880 -12.39245 -12.22703 -12.12020 -11.92982 -11.86186 -11.62863 -11.30551 -11.00415 -10.25609 -10.17144 -9.41384 -8.85691 -8.31368 -5.76524 -0.79226 -0.23177 0.84749 1.27588 1.40956 1.51546 1.96174 2.20048 2.31990 2.52431 2.97873 3.06917 3.19861 3.49272 3.65907 3.74663 3.93385 4.11751 4.13790 4.25670 4.31833 4.41483 4.42426 4.53767 4.65535 4.73201 4.89838 4.91660 4.95033 4.98584 5.11303 5.29541 5.32888 5.52494 5.67503 5.96664 6.10485 6.42262 6.70169 7.22544 7.38650 7.67161 8.86447 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.016355 B = 0.006654 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.623741 B = 4207.104365 C = 5523.149663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.039 3.961 3 O -0.332 6.332 4 C 0.120 3.880 5 C -0.136 4.136 6 C -0.065 4.065 7 C 0.114 3.886 8 N -0.518 5.518 9 C 0.289 3.711 10 N -0.574 5.574 11 C 0.467 3.533 12 N -0.566 5.566 13 C 0.103 3.897 14 C -0.270 4.270 15 H 0.050 0.950 16 C -0.006 4.006 17 N -0.936 5.936 18 Si 0.950 3.050 19 H -0.253 1.253 20 H -0.302 1.302 21 H -0.276 1.276 22 C -0.141 4.141 23 C -0.122 4.122 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.107 0.893 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.183 0.817 30 H 0.174 0.826 31 H 0.222 0.778 32 H 0.025 0.975 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.271 0.729 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.781 -18.350 -8.126 20.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.035 4.035 3 O -0.247 6.247 4 C 0.074 3.926 5 C -0.157 4.157 6 C -0.084 4.084 7 C -0.014 4.014 8 N -0.233 5.233 9 C -0.001 4.001 10 N -0.292 5.292 11 C 0.218 3.782 12 N -0.287 5.287 13 C -0.040 4.040 14 C -0.397 4.397 15 H 0.068 0.932 16 C -0.204 4.204 17 N -0.578 5.578 18 Si 0.777 3.223 19 H -0.178 1.178 20 H -0.230 1.230 21 H -0.202 1.202 22 C -0.149 4.149 23 C -0.144 4.144 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.125 0.875 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.200 0.800 30 H 0.192 0.808 31 H 0.238 0.762 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.006 -18.089 -8.061 19.829 hybrid contribution -0.403 1.198 0.065 1.265 sum -1.409 -16.891 -7.996 18.741 Atomic orbital electron populations 1.21826 0.91845 1.04305 1.02896 1.23230 0.96881 0.80312 1.03106 1.86154 1.18041 1.32144 1.88323 1.18990 0.83465 0.93327 0.96768 1.21526 0.93184 0.99342 1.01684 1.20859 0.94931 0.94887 0.97678 1.19350 0.89095 0.94114 0.98807 1.68741 1.12404 1.25788 1.16322 1.25249 1.01617 0.82080 0.91152 1.68582 1.07914 1.36194 1.16515 1.19017 0.86637 0.87780 0.84733 1.41283 1.54887 1.28413 1.04137 1.21632 0.99229 0.97477 0.85623 1.18430 1.39706 0.92514 0.89099 0.93241 1.25775 0.97557 0.97893 0.99174 1.69855 1.35568 1.15939 1.36481 0.86007 0.79785 0.77230 0.79245 1.17811 1.23046 1.20201 1.19755 0.95529 0.95028 1.04609 1.20236 0.93212 0.96356 1.04591 0.92574 0.92100 0.87488 0.89749 0.90327 0.80025 0.80849 0.76200 0.95707 0.91449 0.91108 0.91984 0.86093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 10.28 71.98 0.74 -1.37 16 2 C 0.04 0.63 5.45 71.98 0.39 1.02 16 3 O -0.33 -9.27 10.12 -92.60 -0.94 -10.20 16 4 C 0.12 3.65 6.68 22.53 0.15 3.80 16 5 C -0.14 -3.06 8.94 22.15 0.20 -2.87 16 6 C -0.07 -1.65 9.99 22.27 0.22 -1.43 16 7 C 0.11 4.00 6.61 40.11 0.27 4.27 16 8 N -0.52 -18.04 10.44 -193.88 -2.03 -20.06 16 9 C 0.29 10.37 12.22 180.91 2.21 12.58 16 10 N -0.57 -25.56 10.43 -196.66 -2.05 -27.61 16 11 C 0.47 21.86 6.14 134.00 0.82 22.69 16 12 N -0.57 -28.64 2.07 -539.54 -1.12 -29.75 16 13 C 0.10 4.55 8.31 127.77 1.06 5.61 16 14 C -0.27 -15.80 10.01 84.07 0.84 -14.96 16 15 H 0.05 3.24 8.06 -2.91 -0.02 3.21 16 16 C -0.01 -0.34 5.22 84.91 0.44 0.11 16 17 N -0.94 -57.86 13.96 21.66 0.30 -57.56 16 18 Si 0.95 46.49 23.99 68.60 1.65 48.14 16 19 H -0.25 -11.11 6.41 99.48 0.64 -10.47 16 20 H -0.30 -14.78 7.11 99.48 0.71 -14.08 16 21 H -0.28 -13.80 6.78 99.48 0.67 -13.12 16 22 C -0.14 -5.80 5.76 -21.19 -0.12 -5.93 16 23 C -0.12 -4.78 9.55 22.57 0.22 -4.56 16 24 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.08 0.99 7.64 -2.39 -0.02 0.97 16 28 H 0.08 1.02 7.64 -2.39 -0.02 1.00 16 29 H 0.18 2.31 6.22 -2.91 -0.02 2.29 16 30 H 0.17 3.18 8.06 -2.91 -0.02 3.16 16 31 H 0.22 5.91 8.06 -2.91 -0.02 5.88 16 32 H 0.02 1.09 5.61 -2.38 -0.01 1.08 16 33 H 0.07 2.55 8.08 -2.39 -0.02 2.53 16 34 H 0.07 3.15 5.83 -2.39 -0.01 3.13 16 35 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 36 H 0.12 5.39 7.66 -2.91 -0.02 5.37 16 Total: -1.00 -73.85 302.07 4.26 -69.59 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 1.00 Total: 8.50 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 7.44 Total: 18.97 kcal Atomic # 7 Polarization: -130.10 SS G_CDS: -4.89 Total: -134.99 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -0.94 Total: -10.20 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.65 Total: 48.14 kcal Total: -73.85 4.26 -69.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799096.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.175 kcal (2) G-P(sol) polarization free energy of solvation -73.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds